HEADER SIGNALING PROTEIN/PROTEIN BINDING 25-SEP-18 6IGK TITLE CRYSTAL STRUCTURE OF HUMAN ETB RECEPTOR IN COMPLEX WITH ENDOTHELIN-3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDOTHELIN RECEPTOR TYPE B,ENDOLYSIN,ENDOTHELIN RECEPTOR COMPND 3 TYPE B; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: ET-BR,ENDOTHELIN RECEPTOR NON-SELECTIVE TYPE,LYSIS PROTEIN, COMPND 6 LYSOZYME,MURAMIDASE; COMPND 7 EC: 3.2.1.17; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 OTHER_DETAILS: CHIMERA PROTEIN OF ENDOTHELIN RECEPTOR TYPE B INSERTED COMPND 11 WITH ENDOLYSIN BETWEEN RESIDUES 303 AND 311.; COMPND 12 MOL_ID: 2; COMPND 13 MOLECULE: ENDOTHELIN-3; COMPND 14 CHAIN: B; COMPND 15 SYNONYM: ET-3,PREPROENDOTHELIN-3,PPET3; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS, ENTEROBACTERIA PHAGE RB59; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606, 697290; SOURCE 5 GENE: EDNRB, ETRB, E, RB59_126; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: SF9; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: MODIFIED PFASTBAC; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606 KEYWDS ALPHA HELICAL, SIGNALING PROTEIN-PROTEIN BINDING COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR W.SHIHOYA,T.IZUME,A.INOUE,K.YAMASHITA,F.M.N.KADJI,K.HIRATA,J.AOKI, AUTHOR 2 T.NISHIZAWA,O.NUREKI REVDAT 2 22-NOV-23 6IGK 1 REMARK REVDAT 1 21-NOV-18 6IGK 0 JRNL AUTH W.SHIHOYA,T.IZUME,A.INOUE,K.YAMASHITA,F.M.N.KADJI,K.HIRATA, JRNL AUTH 2 J.AOKI,T.NISHIZAWA,O.NUREKI JRNL TITL CRYSTAL STRUCTURES OF HUMAN ETBRECEPTOR PROVIDE MECHANISTIC JRNL TITL 2 INSIGHT INTO RECEPTOR ACTIVATION AND PARTIAL ACTIVATION. JRNL REF NAT COMMUN V. 9 4711 2018 JRNL REFN ESSN 2041-1723 JRNL PMID 30413709 JRNL DOI 10.1038/S41467-018-07094-0 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.60 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 46782 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.270 REMARK 3 FREE R VALUE TEST SET COUNT : 1998 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.6145 - 4.8191 1.00 3375 150 0.1865 0.2275 REMARK 3 2 4.8191 - 3.8255 1.00 3251 146 0.1696 0.2094 REMARK 3 3 3.8255 - 3.3421 1.00 3242 144 0.1624 0.2467 REMARK 3 4 3.3421 - 3.0366 1.00 3204 144 0.1768 0.2023 REMARK 3 5 3.0366 - 2.8189 1.00 3183 142 0.1661 0.1801 REMARK 3 6 2.8189 - 2.6527 1.00 3201 142 0.1649 0.2208 REMARK 3 7 2.6527 - 2.5199 1.00 3171 142 0.1667 0.2234 REMARK 3 8 2.5199 - 2.4102 1.00 3186 143 0.1798 0.2180 REMARK 3 9 2.4102 - 2.3174 1.00 3169 141 0.1834 0.2428 REMARK 3 10 2.3174 - 2.2375 1.00 3164 141 0.1993 0.2253 REMARK 3 11 2.2375 - 2.1675 1.00 3174 142 0.2074 0.2745 REMARK 3 12 2.1675 - 2.1055 1.00 3152 141 0.2456 0.2874 REMARK 3 13 2.1055 - 2.0501 1.00 3147 140 0.2770 0.2885 REMARK 3 14 2.0501 - 2.0001 1.00 3165 140 0.3583 0.3702 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.030 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.54 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 86:164 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.967 42.034 137.416 REMARK 3 T TENSOR REMARK 3 T11: 0.2994 T22: 0.3197 REMARK 3 T33: 0.2150 T12: -0.0033 REMARK 3 T13: -0.0204 T23: 0.0032 REMARK 3 L TENSOR REMARK 3 L11: 2.0430 L22: 3.6691 REMARK 3 L33: 2.0854 L12: -0.5877 REMARK 3 L13: 0.3923 L23: 0.2668 REMARK 3 S TENSOR REMARK 3 S11: -0.1555 S12: -0.1941 S13: 0.2099 REMARK 3 S21: 0.4677 S22: 0.1318 S23: -0.3781 REMARK 3 S31: -0.3085 S32: -0.0426 S33: 0.0149 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 165:303 ) OR ( CHAIN A AND RESID REMARK 3 1000:1009 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.127 44.532 129.735 REMARK 3 T TENSOR REMARK 3 T11: 0.1748 T22: 0.3118 REMARK 3 T33: 0.2936 T12: 0.0021 REMARK 3 T13: 0.0303 T23: 0.0403 REMARK 3 L TENSOR REMARK 3 L11: 0.3646 L22: 4.3559 REMARK 3 L33: 1.1495 L12: -0.8803 REMARK 3 L13: 0.3714 L23: -1.5420 REMARK 3 S TENSOR REMARK 3 S11: -0.0249 S12: -0.1846 S13: -0.1758 REMARK 3 S21: 0.2988 S22: 0.1577 S23: 0.4153 REMARK 3 S31: -0.0102 S32: -0.0986 S33: -0.1465 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 1010:1159 ) OR ( CHAIN A AND REMARK 3 RESID 311:312 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.815 80.865 103.410 REMARK 3 T TENSOR REMARK 3 T11: 0.4148 T22: 0.2706 REMARK 3 T33: 0.2589 T12: -0.0488 REMARK 3 T13: 0.0670 T23: 0.0046 REMARK 3 L TENSOR REMARK 3 L11: 3.0008 L22: 2.0454 REMARK 3 L33: 2.5333 L12: -0.6271 REMARK 3 L13: -1.3194 L23: 0.3618 REMARK 3 S TENSOR REMARK 3 S11: 0.0179 S12: 0.2694 S13: 0.0680 REMARK 3 S21: -0.5946 S22: -0.0291 S23: -0.3174 REMARK 3 S31: -0.2673 S32: 0.1923 S33: 0.0190 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN A AND RESID 313:403 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.177 44.992 126.920 REMARK 3 T TENSOR REMARK 3 T11: 0.1718 T22: 0.2623 REMARK 3 T33: 0.2633 T12: -0.0035 REMARK 3 T13: 0.0029 T23: 0.0229 REMARK 3 L TENSOR REMARK 3 L11: 0.7313 L22: 3.0778 REMARK 3 L33: 1.4084 L12: -1.0416 REMARK 3 L13: 0.2706 L23: -1.4617 REMARK 3 S TENSOR REMARK 3 S11: -0.0787 S12: -0.0168 S13: 0.1673 REMARK 3 S21: 0.0028 S22: -0.0045 S23: -0.4246 REMARK 3 S31: -0.1816 S32: 0.0360 S33: 0.0602 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN B AND RESID 1:8 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.101 17.119 129.353 REMARK 3 T TENSOR REMARK 3 T11: 0.3234 T22: 0.5014 REMARK 3 T33: 0.5867 T12: -0.0075 REMARK 3 T13: 0.0108 T23: -0.0060 REMARK 3 L TENSOR REMARK 3 L11: 9.0435 L22: 3.8520 REMARK 3 L33: 5.9642 L12: 2.8909 REMARK 3 L13: 2.7445 L23: 4.7532 REMARK 3 S TENSOR REMARK 3 S11: -0.2036 S12: -0.3711 S13: -0.1624 REMARK 3 S21: 0.3021 S22: -0.3415 S23: 1.2130 REMARK 3 S31: 0.0029 S32: -1.0708 S33: 0.4689 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN B AND RESID 9:21 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.699 22.590 132.731 REMARK 3 T TENSOR REMARK 3 T11: 0.2615 T22: 0.3205 REMARK 3 T33: 0.2989 T12: 0.0325 REMARK 3 T13: 0.0449 T23: 0.0529 REMARK 3 L TENSOR REMARK 3 L11: 2.1237 L22: 7.4919 REMARK 3 L33: 2.5604 L12: 0.1316 REMARK 3 L13: 0.3986 L23: 0.2153 REMARK 3 S TENSOR REMARK 3 S11: 0.0257 S12: -0.2180 S13: -0.4263 REMARK 3 S21: 0.1090 S22: -0.0203 S23: -0.1141 REMARK 3 S31: 0.2128 S32: -0.0515 S33: -0.0141 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6IGK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-OCT-18. REMARK 100 THE DEPOSITION ID IS D_1300009132. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL32XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46829 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 49.599 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 204.6 REMARK 200 R MERGE (I) : 0.85800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 199.2 REMARK 200 R MERGE FOR SHELL (I) : 18.01100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.950 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5GLH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 500DME, AMMONIUM CITRATE TRIBASIC, REMARK 280 PH 6.0, LIPIDIC CUBIC PHASE, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.66500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 60.66500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 32.77500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 86.14000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 32.77500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 86.14000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 60.66500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 32.77500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 86.14000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 60.66500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 32.77500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 86.14000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 63 REMARK 465 GLY A 64 REMARK 465 GLY A 65 REMARK 465 LEU A 66 REMARK 465 ALA A 67 REMARK 465 PRO A 68 REMARK 465 ALA A 69 REMARK 465 GLU A 70 REMARK 465 VAL A 71 REMARK 465 PRO A 72 REMARK 465 LYS A 73 REMARK 465 GLY A 74 REMARK 465 ASP A 75 REMARK 465 ARG A 76 REMARK 465 THR A 77 REMARK 465 ALA A 78 REMARK 465 GLY A 79 REMARK 465 SER A 80 REMARK 465 PRO A 81 REMARK 465 PRO A 82 REMARK 465 ARG A 83 REMARK 465 THR A 84 REMARK 465 ILE A 85 REMARK 465 TRP A 404 REMARK 465 ALA A 405 REMARK 465 GLN A 406 REMARK 465 SER A 407 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 128 CG CD CE NZ REMARK 470 LYS A 130 CG CD CE NZ REMARK 470 ARG A 201 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 391 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 260 79.60 60.03 REMARK 500 PHE A 282 -64.80 -131.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 OLC A 1209 REMARK 610 OLC A 1211 REMARK 610 OLC A 1212 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1211 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1212 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CIT A 1213 DBREF 6IGK A 66 303 UNP P24530 EDNRB_HUMAN 66 303 DBREF1 6IGK A 1000 1159 UNP A0A097J809_BPT4 DBREF2 6IGK A A0A097J809 2 161 DBREF 6IGK A 311 407 UNP P24530 EDNRB_HUMAN 311 407 DBREF 6IGK B 1 21 UNP P14138 EDN3_HUMAN 97 117 SEQADV 6IGK GLY A 63 UNP P24530 EXPRESSION TAG SEQADV 6IGK GLY A 64 UNP P24530 EXPRESSION TAG SEQADV 6IGK GLY A 65 UNP P24530 EXPRESSION TAG SEQADV 6IGK TYR A 124 UNP P24530 ARG 124 ENGINEERED MUTATION SEQADV 6IGK ALA A 154 UNP P24530 ASP 154 ENGINEERED MUTATION SEQADV 6IGK ALA A 270 UNP P24530 LYS 270 ENGINEERED MUTATION SEQADV 6IGK THR A 1052 UNP A0A097J80 CYS 54 ENGINEERED MUTATION SEQADV 6IGK ALA A 1095 UNP A0A097J80 CYS 97 ENGINEERED MUTATION SEQADV 6IGK ALA A 342 UNP P24530 SER 342 ENGINEERED MUTATION SEQADV 6IGK ALA A 381 UNP P24530 ILE 381 ENGINEERED MUTATION SEQADV 6IGK ALA A 396 UNP P24530 CYS 396 ENGINEERED MUTATION SEQADV 6IGK ALA A 400 UNP P24530 CYS 400 ENGINEERED MUTATION SEQADV 6IGK ALA A 405 UNP P24530 CYS 405 ENGINEERED MUTATION SEQRES 1 A 498 GLY GLY GLY LEU ALA PRO ALA GLU VAL PRO LYS GLY ASP SEQRES 2 A 498 ARG THR ALA GLY SER PRO PRO ARG THR ILE SER PRO PRO SEQRES 3 A 498 PRO CYS GLN GLY PRO ILE GLU ILE LYS GLU THR PHE LYS SEQRES 4 A 498 TYR ILE ASN THR VAL VAL SER CYS LEU VAL PHE VAL LEU SEQRES 5 A 498 GLY ILE ILE GLY ASN SER THR LEU LEU TYR ILE ILE TYR SEQRES 6 A 498 LYS ASN LYS CYS MET ARG ASN GLY PRO ASN ILE LEU ILE SEQRES 7 A 498 ALA SER LEU ALA LEU GLY ASP LEU LEU HIS ILE VAL ILE SEQRES 8 A 498 ALA ILE PRO ILE ASN VAL TYR LYS LEU LEU ALA GLU ASP SEQRES 9 A 498 TRP PRO PHE GLY ALA GLU MET CYS LYS LEU VAL PRO PHE SEQRES 10 A 498 ILE GLN LYS ALA SER VAL GLY ILE THR VAL LEU SER LEU SEQRES 11 A 498 CYS ALA LEU SER ILE ASP ARG TYR ARG ALA VAL ALA SER SEQRES 12 A 498 TRP SER ARG ILE LYS GLY ILE GLY VAL PRO LYS TRP THR SEQRES 13 A 498 ALA VAL GLU ILE VAL LEU ILE TRP VAL VAL SER VAL VAL SEQRES 14 A 498 LEU ALA VAL PRO GLU ALA ILE GLY PHE ASP ILE ILE THR SEQRES 15 A 498 MET ASP TYR LYS GLY SER TYR LEU ARG ILE CYS LEU LEU SEQRES 16 A 498 HIS PRO VAL GLN LYS THR ALA PHE MET GLN PHE TYR ALA SEQRES 17 A 498 THR ALA LYS ASP TRP TRP LEU PHE SER PHE TYR PHE CYS SEQRES 18 A 498 LEU PRO LEU ALA ILE THR ALA PHE PHE TYR THR LEU MET SEQRES 19 A 498 THR CYS GLU MET LEU ARG LYS ASN ILE PHE GLU MET LEU SEQRES 20 A 498 ARG ILE ASP GLU GLY LEU ARG LEU LYS ILE TYR LYS ASP SEQRES 21 A 498 THR GLU GLY TYR TYR THR ILE GLY ILE GLY HIS LEU LEU SEQRES 22 A 498 THR LYS SER PRO SER LEU ASN ALA ALA LYS SER GLU LEU SEQRES 23 A 498 ASP LYS ALA ILE GLY ARG ASN THR ASN GLY VAL ILE THR SEQRES 24 A 498 LYS ASP GLU ALA GLU LYS LEU PHE ASN GLN ASP VAL ASP SEQRES 25 A 498 ALA ALA VAL ARG GLY ILE LEU ARG ASN ALA LYS LEU LYS SEQRES 26 A 498 PRO VAL TYR ASP SER LEU ASP ALA VAL ARG ARG ALA ALA SEQRES 27 A 498 LEU ILE ASN MET VAL PHE GLN MET GLY GLU THR GLY VAL SEQRES 28 A 498 ALA GLY PHE THR ASN SER LEU ARG MET LEU GLN GLN LYS SEQRES 29 A 498 ARG TRP ASP GLU ALA ALA VAL ASN LEU ALA LYS SER ARG SEQRES 30 A 498 TRP TYR ASN GLN THR PRO ASN ARG ALA LYS ARG VAL ILE SEQRES 31 A 498 THR THR PHE ARG THR GLY THR TRP ASP ALA TYR LEU ASN SEQRES 32 A 498 ASP HIS LEU LYS GLN ARG ARG GLU VAL ALA LYS THR VAL SEQRES 33 A 498 PHE CYS LEU VAL LEU VAL PHE ALA LEU CYS TRP LEU PRO SEQRES 34 A 498 LEU HIS LEU ALA ARG ILE LEU LYS LEU THR LEU TYR ASN SEQRES 35 A 498 GLN ASN ASP PRO ASN ARG CYS GLU LEU LEU SER PHE LEU SEQRES 36 A 498 LEU VAL LEU ASP TYR ILE GLY ILE ASN MET ALA SER LEU SEQRES 37 A 498 ASN SER CYS ALA ASN PRO ILE ALA LEU TYR LEU VAL SER SEQRES 38 A 498 LYS ARG PHE LYS ASN ALA PHE LYS SER ALA LEU CYS CYS SEQRES 39 A 498 TRP ALA GLN SER SEQRES 1 B 21 CYS THR CYS PHE THR TYR LYS ASP LYS GLU CYS VAL TYR SEQRES 2 B 21 TYR CYS HIS LEU ASP ILE ILE TRP HET OLC A1201 25 HET OLC A1202 25 HET OLC A1203 25 HET OLC A1204 25 HET OLC A1205 25 HET OLC A1206 25 HET OLC A1207 25 HET OLC A1208 25 HET OLC A1209 20 HET OLC A1210 25 HET OLC A1211 19 HET OLC A1212 19 HET CIT A1213 13 HETNAM OLC (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE HETNAM CIT CITRIC ACID HETSYN OLC 1-OLEOYL-R-GLYCEROL FORMUL 3 OLC 12(C21 H40 O4) FORMUL 15 CIT C6 H8 O7 FORMUL 16 HOH *175(H2 O) HELIX 1 AA1 LYS A 97 ASN A 129 1 33 HELIX 2 AA2 LYS A 130 ARG A 133 5 4 HELIX 3 AA3 ASN A 134 GLU A 165 1 32 HELIX 4 AA4 PHE A 169 SER A 205 1 37 HELIX 5 AA5 PRO A 215 ALA A 233 1 19 HELIX 6 AA6 ALA A 233 GLY A 239 1 7 HELIX 7 AA7 THR A 263 PHE A 282 1 20 HELIX 8 AA8 PHE A 282 GLY A 1010 1 33 HELIX 9 AA9 SER A 1036 GLY A 1049 1 14 HELIX 10 AB1 THR A 1057 ARG A 1078 1 22 HELIX 11 AB2 LEU A 1082 LEU A 1089 1 8 HELIX 12 AB3 ASP A 1090 GLY A 1111 1 22 HELIX 13 AB4 PHE A 1112 GLN A 1121 1 10 HELIX 14 AB5 ARG A 1123 ALA A 1132 1 10 HELIX 15 AB6 SER A 1134 THR A 1140 1 7 HELIX 16 AB7 THR A 1140 GLY A 1154 1 15 HELIX 17 AB8 TRP A 1156 LEU A 311 5 5 HELIX 18 AB9 ASN A 312 TYR A 350 1 39 HELIX 19 AC1 ARG A 357 SER A 390 1 34 HELIX 20 AC2 SER A 390 CYS A 402 1 13 HELIX 21 AC3 ASP B 8 ASP B 18 1 11 SHEET 1 AA1 2 PHE A 240 TYR A 247 0 SHEET 2 AA1 2 SER A 250 LEU A 257 -1 O ILE A 254 N ILE A 243 SHEET 1 AA2 3 ARG A1012 LYS A1017 0 SHEET 2 AA2 3 TYR A1023 GLY A1026 -1 O GLY A1026 N ARG A1012 SHEET 3 AA2 3 HIS A1029 THR A1032 -1 O LEU A1031 N TYR A1023 SSBOND 1 CYS A 90 CYS A 358 1555 1555 2.06 SSBOND 2 CYS A 174 CYS A 255 1555 1555 2.06 SSBOND 3 CYS B 1 CYS B 15 1555 1555 2.06 SSBOND 4 CYS B 3 CYS B 11 1555 1555 2.05 SITE 1 AC1 6 LYS A 101 TYR A 102 THR A 105 VAL A 106 SITE 2 AC1 6 LEU A 110 LEU A 114 SITE 1 AC2 2 PRO A 156 LEU A 163 SITE 1 AC3 3 LEU A 145 ILE A 222 OLC A1204 SITE 1 AC4 5 LEU A 149 LYS A 175 PHE A 179 ALA A 183 SITE 2 AC4 5 OLC A1203 SITE 1 AC5 3 LEU A 341 LEU A 349 OLC A1210 SITE 1 AC6 5 TRP A 275 CYS A 283 LEU A 337 LEU A 341 SITE 2 AC6 5 ILE A 344 SITE 1 AC7 3 LEU A 284 ILE A 288 OLC A1208 SITE 1 AC8 7 TYR A 200 ALA A 287 PHE A 291 LEU A 295 SITE 2 AC8 7 VAL A 366 OLC A1207 HOH A1367 SITE 1 AC9 5 VAL A 231 ILE A 238 THR A 263 PHE A 265 SITE 2 AC9 5 TRP A 276 SITE 1 AD1 7 CYS A 327 LEU A 334 MET A 374 ALA A 385 SITE 2 AD1 7 LEU A 388 VAL A 389 OLC A1205 SITE 1 AD2 3 TRP A 275 SER A 279 OLC A1212 SITE 1 AD3 5 TRP A 275 TRP A 276 SER A 279 PHE A 280 SITE 2 AD3 5 OLC A1211 SITE 1 AD4 5 GLY A1111 ASN A1114 SER A1115 ASN A1130 SITE 2 AD4 5 HOH A1303 CRYST1 65.550 172.280 121.330 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015256 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005805 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008242 0.00000