HEADER OXYGEN TRANSPORT 03-OCT-18 6II1 TITLE CRYSTAL STRUCTURE ANALYSIS OF CO FORM HEMOGLOBIN FROM BOS TAURUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMOGLOBIN SUBUNIT ALPHA; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: ALPHA-GLOBIN,HEMOGLOBIN ALPHA CHAIN; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: HEMOGLOBIN SUBUNIT BETA; COMPND 7 CHAIN: B, D; COMPND 8 SYNONYM: BETA-GLOBIN,HEMOGLOBIN BETA CHAIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: BOVINE; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 7 ORGANISM_COMMON: BOVINE; SOURCE 8 ORGANISM_TAXID: 9913 KEYWDS HEME BINDING, IRON ION BINDING, RED BLOOD CELLS, GLOBIN FAMILY, KEYWDS 2 OXYGEN TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR K.KIHIRA,Y.MORITA,T.YAMADA,M.KUREISHI,T.KOMATSU REVDAT 3 22-NOV-23 6II1 1 REMARK REVDAT 2 24-APR-19 6II1 1 JRNL REVDAT 1 12-DEC-18 6II1 0 JRNL AUTH Y.MORITA,T.YAMADA,M.KUREISHI,K.KIHIRA,T.KOMATSU JRNL TITL QUATERNARY STRUCTURE ANALYSIS OF A HEMOGLOBIN CORE IN JRNL TITL 2 HEMOGLOBIN-ALBUMIN CLUSTER. JRNL REF J PHYS CHEM B V. 122 12031 2018 JRNL REFN ISSN 1520-5207 JRNL PMID 30444368 JRNL DOI 10.1021/ACS.JPCB.8B10077 REMARK 2 REMARK 2 RESOLUTION. 1.34 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0230 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.34 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.83 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 117962 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.138 REMARK 3 R VALUE (WORKING SET) : 0.137 REMARK 3 FREE R VALUE : 0.175 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.700 REMARK 3 FREE R VALUE TEST SET COUNT : 1998 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.34 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.38 REMARK 3 REFLECTION IN BIN (WORKING SET) : 8592 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.70 REMARK 3 BIN R VALUE (WORKING SET) : 0.2300 REMARK 3 BIN FREE R VALUE SET COUNT : 145 REMARK 3 BIN FREE R VALUE : 0.2800 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4294 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 180 REMARK 3 SOLVENT ATOMS : 723 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.71000 REMARK 3 B22 (A**2) : 1.24000 REMARK 3 B33 (A**2) : -0.52000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.050 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.050 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.036 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.027 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.977 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.969 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4637 ; 0.010 ; 0.014 REMARK 3 BOND LENGTHS OTHERS (A): 4253 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6345 ; 1.465 ; 1.704 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9859 ; 1.164 ; 1.679 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 567 ; 5.110 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 192 ;34.090 ;23.333 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 721 ;11.438 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;16.541 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 555 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5240 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 944 ; 0.009 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 8890 ; 2.312 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 176 ;34.501 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 9307 ;14.908 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 2 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 2 137 C 2 137 4286 0.070 0.050 REMARK 3 2 B 3 144 D 3 144 4524 0.080 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.00 REMARK 3 ION PROBE RADIUS : 0.70 REMARK 3 SHRINKAGE RADIUS : 0.70 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6II1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-OCT-18. REMARK 100 THE DEPOSITION ID IS D_1300009230. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-NOV-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS JUN 1, 2017 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.31 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 120044 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.340 REMARK 200 RESOLUTION RANGE LOW (A) : 48.830 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 14.50 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.34 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.36 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 14.40 REMARK 200 R MERGE FOR SHELL (I) : 1.51700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.1 REMARK 200 STARTING MODEL: 6IHX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG3,350 0.2 M MGCL2 0.2 M KCL 0.2 REMARK 280 M NACL 0.1 M HEPES PH6.8, COUNTER-DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.78000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.89450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.14150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.89450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.78000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.14150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 1 REMARK 465 MET B 2 REMARK 465 HIS B 146 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 FE HEM A 201 C CMO A 202 1.72 REMARK 500 FE HEM D 201 C CMO D 202 1.77 REMARK 500 FE HEM C 201 C CMO C 202 1.80 REMARK 500 FE HEM B 201 C CMO B 202 1.84 REMARK 500 O HOH C 434 O HOH C 483 2.04 REMARK 500 OE1 GLU A 30 O HOH A 301 2.04 REMARK 500 O HOH C 465 O HOH C 483 2.07 REMARK 500 O HOH D 446 O HOH D 460 2.10 REMARK 500 O HOH B 318 O HOH B 376 2.10 REMARK 500 O HOH D 315 O HOH D 479 2.13 REMARK 500 O HOH A 449 O HOH A 465 2.17 REMARK 500 O GLY A 18 O HOH A 302 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 403 O HOH D 407 1655 1.93 REMARK 500 O HOH C 483 O HOH D 428 2575 2.06 REMARK 500 O HOH C 460 O HOH D 306 3557 2.14 REMARK 500 O HOH A 456 O HOH C 483 2574 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 75 61.75 -152.45 REMARK 500 HIS B 77 48.97 -140.19 REMARK 500 ASP B 80 52.37 -144.62 REMARK 500 HIS C 72 46.19 -140.42 REMARK 500 ASP C 75 61.38 -153.83 REMARK 500 LEU D 3 148.54 77.23 REMARK 500 HIS D 77 47.81 -140.00 REMARK 500 ASP D 80 54.73 -145.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 92 0.12 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 493 DISTANCE = 6.08 ANGSTROMS REMARK 525 HOH B 450 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH B 451 DISTANCE = 7.04 ANGSTROMS REMARK 525 HOH C 487 DISTANCE = 6.16 ANGSTROMS REMARK 525 HOH D 491 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH D 492 DISTANCE = 6.04 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 87 NE2 REMARK 620 2 HEM A 201 NA 88.7 REMARK 620 3 HEM A 201 NB 87.9 88.9 REMARK 620 4 HEM A 201 NC 91.0 178.6 89.7 REMARK 620 5 HEM A 201 ND 92.0 91.3 179.8 90.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 92 NE2 REMARK 620 2 HEM B 201 NA 90.2 REMARK 620 3 HEM B 201 NB 88.7 86.9 REMARK 620 4 HEM B 201 NC 89.9 178.4 91.5 REMARK 620 5 HEM B 201 ND 90.5 90.4 177.2 91.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM C 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 87 NE2 REMARK 620 2 HEM C 201 NA 89.2 REMARK 620 3 HEM C 201 NB 87.8 88.9 REMARK 620 4 HEM C 201 NC 89.6 178.2 89.7 REMARK 620 5 HEM C 201 ND 90.9 91.0 178.7 90.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM D 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 92 NE2 REMARK 620 2 HEM D 201 NA 89.4 REMARK 620 3 HEM D 201 NB 86.5 88.8 REMARK 620 4 HEM D 201 NC 88.5 176.9 88.9 REMARK 620 5 HEM D 201 ND 90.7 91.6 177.1 90.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CMO A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CMO B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CMO C 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM D 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CMO D 202 DBREF 6II1 A 1 138 UNP P01966 HBA_BOVIN 2 139 DBREF 6II1 B 2 146 UNP P02070 HBB_BOVIN 1 145 DBREF 6II1 C 1 138 UNP P01966 HBA_BOVIN 2 139 DBREF 6II1 D 2 146 UNP P02070 HBB_BOVIN 1 145 SEQRES 1 A 138 VAL LEU SER ALA ALA ASP LYS GLY ASN VAL LYS ALA ALA SEQRES 2 A 138 TRP GLY LYS VAL GLY GLY HIS ALA ALA GLU TYR GLY ALA SEQRES 3 A 138 GLU ALA LEU GLU ARG MET PHE LEU SER PHE PRO THR THR SEQRES 4 A 138 LYS THR TYR PHE PRO HIS PHE ASP LEU SER HIS GLY SER SEQRES 5 A 138 ALA GLN VAL LYS GLY HIS GLY ALA LYS VAL ALA ALA ALA SEQRES 6 A 138 LEU THR LYS ALA VAL GLU HIS LEU ASP ASP LEU PRO GLY SEQRES 7 A 138 ALA LEU SER GLU LEU SER ASP LEU HIS ALA HIS LYS LEU SEQRES 8 A 138 ARG VAL ASP PRO VAL ASN PHE LYS LEU LEU SER HIS SER SEQRES 9 A 138 LEU LEU VAL THR LEU ALA SER HIS LEU PRO SER ASP PHE SEQRES 10 A 138 THR PRO ALA VAL HIS ALA SER LEU ASP LYS PHE LEU ALA SEQRES 11 A 138 ASN VAL SER THR VAL LEU THR SER SEQRES 1 B 145 MET LEU THR ALA GLU GLU LYS ALA ALA VAL THR ALA PHE SEQRES 2 B 145 TRP GLY LYS VAL LYS VAL ASP GLU VAL GLY GLY GLU ALA SEQRES 3 B 145 LEU GLY ARG LEU LEU VAL VAL TYR PRO TRP THR GLN ARG SEQRES 4 B 145 PHE PHE GLU SER PHE GLY ASP LEU SER THR ALA ASP ALA SEQRES 5 B 145 VAL MET ASN ASN PRO LYS VAL LYS ALA HIS GLY LYS LYS SEQRES 6 B 145 VAL LEU ASP SER PHE SER ASN GLY MET LYS HIS LEU ASP SEQRES 7 B 145 ASP LEU LYS GLY THR PHE ALA ALA LEU SER GLU LEU HIS SEQRES 8 B 145 CYS ASP LYS LEU HIS VAL ASP PRO GLU ASN PHE LYS LEU SEQRES 9 B 145 LEU GLY ASN VAL LEU VAL VAL VAL LEU ALA ARG ASN PHE SEQRES 10 B 145 GLY LYS GLU PHE THR PRO VAL LEU GLN ALA ASP PHE GLN SEQRES 11 B 145 LYS VAL VAL ALA GLY VAL ALA ASN ALA LEU ALA HIS ARG SEQRES 12 B 145 TYR HIS SEQRES 1 C 138 VAL LEU SER ALA ALA ASP LYS GLY ASN VAL LYS ALA ALA SEQRES 2 C 138 TRP GLY LYS VAL GLY GLY HIS ALA ALA GLU TYR GLY ALA SEQRES 3 C 138 GLU ALA LEU GLU ARG MET PHE LEU SER PHE PRO THR THR SEQRES 4 C 138 LYS THR TYR PHE PRO HIS PHE ASP LEU SER HIS GLY SER SEQRES 5 C 138 ALA GLN VAL LYS GLY HIS GLY ALA LYS VAL ALA ALA ALA SEQRES 6 C 138 LEU THR LYS ALA VAL GLU HIS LEU ASP ASP LEU PRO GLY SEQRES 7 C 138 ALA LEU SER GLU LEU SER ASP LEU HIS ALA HIS LYS LEU SEQRES 8 C 138 ARG VAL ASP PRO VAL ASN PHE LYS LEU LEU SER HIS SER SEQRES 9 C 138 LEU LEU VAL THR LEU ALA SER HIS LEU PRO SER ASP PHE SEQRES 10 C 138 THR PRO ALA VAL HIS ALA SER LEU ASP LYS PHE LEU ALA SEQRES 11 C 138 ASN VAL SER THR VAL LEU THR SER SEQRES 1 D 145 MET LEU THR ALA GLU GLU LYS ALA ALA VAL THR ALA PHE SEQRES 2 D 145 TRP GLY LYS VAL LYS VAL ASP GLU VAL GLY GLY GLU ALA SEQRES 3 D 145 LEU GLY ARG LEU LEU VAL VAL TYR PRO TRP THR GLN ARG SEQRES 4 D 145 PHE PHE GLU SER PHE GLY ASP LEU SER THR ALA ASP ALA SEQRES 5 D 145 VAL MET ASN ASN PRO LYS VAL LYS ALA HIS GLY LYS LYS SEQRES 6 D 145 VAL LEU ASP SER PHE SER ASN GLY MET LYS HIS LEU ASP SEQRES 7 D 145 ASP LEU LYS GLY THR PHE ALA ALA LEU SER GLU LEU HIS SEQRES 8 D 145 CYS ASP LYS LEU HIS VAL ASP PRO GLU ASN PHE LYS LEU SEQRES 9 D 145 LEU GLY ASN VAL LEU VAL VAL VAL LEU ALA ARG ASN PHE SEQRES 10 D 145 GLY LYS GLU PHE THR PRO VAL LEU GLN ALA ASP PHE GLN SEQRES 11 D 145 LYS VAL VAL ALA GLY VAL ALA ASN ALA LEU ALA HIS ARG SEQRES 12 D 145 TYR HIS HET HEM A 201 43 HET CMO A 202 2 HET HEM B 201 43 HET CMO B 202 2 HET HEM C 201 43 HET CMO C 202 2 HET HEM D 201 43 HET CMO D 202 2 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM CMO CARBON MONOXIDE HETSYN HEM HEME FORMUL 5 HEM 4(C34 H32 FE N4 O4) FORMUL 6 CMO 4(C O) FORMUL 13 HOH *723(H2 O) HELIX 1 AA1 SER A 3 GLY A 18 1 16 HELIX 2 AA2 HIS A 20 PHE A 36 1 17 HELIX 3 AA3 PRO A 37 PHE A 43 5 7 HELIX 4 AA4 SER A 52 HIS A 72 1 21 HELIX 5 AA5 ASP A 75 LEU A 80 1 6 HELIX 6 AA6 LEU A 80 HIS A 89 1 10 HELIX 7 AA7 ASP A 94 LEU A 113 1 20 HELIX 8 AA8 THR A 118 THR A 137 1 20 HELIX 9 AA9 THR B 4 GLY B 16 1 13 HELIX 10 AB1 LYS B 19 TYR B 35 1 17 HELIX 11 AB2 PRO B 36 GLY B 46 5 11 HELIX 12 AB3 THR B 50 ASN B 57 1 8 HELIX 13 AB4 ASN B 57 LYS B 76 1 20 HELIX 14 AB5 ASP B 80 PHE B 85 1 6 HELIX 15 AB6 PHE B 85 LYS B 95 1 11 HELIX 16 AB7 PRO B 100 GLY B 119 1 20 HELIX 17 AB8 LYS B 120 PHE B 122 5 3 HELIX 18 AB9 THR B 123 ALA B 142 1 20 HELIX 19 AC1 SER C 3 GLY C 18 1 16 HELIX 20 AC2 HIS C 20 PHE C 36 1 17 HELIX 21 AC3 PRO C 37 PHE C 43 5 7 HELIX 22 AC4 SER C 52 HIS C 72 1 21 HELIX 23 AC5 ASP C 75 LEU C 80 1 6 HELIX 24 AC6 LEU C 80 HIS C 89 1 10 HELIX 25 AC7 ASP C 94 LEU C 113 1 20 HELIX 26 AC8 THR C 118 THR C 137 1 20 HELIX 27 AC9 THR D 4 GLY D 16 1 13 HELIX 28 AD1 LYS D 19 TYR D 35 1 17 HELIX 29 AD2 PRO D 36 GLY D 46 5 11 HELIX 30 AD3 THR D 50 ASN D 57 1 8 HELIX 31 AD4 ASN D 57 LYS D 76 1 20 HELIX 32 AD5 ASP D 80 PHE D 85 1 6 HELIX 33 AD6 PHE D 85 LYS D 95 1 11 HELIX 34 AD7 PRO D 100 GLY D 119 1 20 HELIX 35 AD8 LYS D 120 PHE D 122 5 3 HELIX 36 AD9 THR D 123 ALA D 142 1 20 HELIX 37 AE1 HIS D 143 HIS D 146 5 4 LINK NE2 HIS A 87 FE HEM A 201 1555 1555 2.08 LINK NE2 HIS B 92 FE HEM B 201 1555 1555 2.08 LINK NE2 HIS C 87 FE HEM C 201 1555 1555 2.08 LINK NE2 HIS D 92 FE HEM D 201 1555 1555 2.07 SITE 1 AC1 22 TYR A 42 PHE A 43 HIS A 45 HIS A 58 SITE 2 AC1 22 LYS A 61 LEU A 83 LEU A 86 HIS A 87 SITE 3 AC1 22 LEU A 91 VAL A 93 ASN A 97 PHE A 98 SITE 4 AC1 22 LEU A 101 LEU A 136 CMO A 202 HOH A 309 SITE 5 AC1 22 HOH A 319 HOH A 336 HOH A 363 HOH A 381 SITE 6 AC1 22 HOH A 384 HOH A 404 SITE 1 AC2 3 HIS A 58 VAL A 62 HEM A 201 SITE 1 AC3 17 HOH A 421 THR B 38 PHE B 41 PHE B 42 SITE 2 AC3 17 HIS B 63 LYS B 66 SER B 70 PHE B 71 SITE 3 AC3 17 LEU B 88 HIS B 92 LEU B 96 ASN B 102 SITE 4 AC3 17 LEU B 106 LEU B 141 CMO B 202 HOH B 309 SITE 5 AC3 17 HOH B 311 SITE 1 AC4 3 HIS B 63 VAL B 67 HEM B 201 SITE 1 AC5 19 TYR C 42 PHE C 43 HIS C 45 PHE C 46 SITE 2 AC5 19 HIS C 58 LYS C 61 LEU C 83 LEU C 86 SITE 3 AC5 19 HIS C 87 LEU C 91 VAL C 93 ASN C 97 SITE 4 AC5 19 PHE C 98 LEU C 101 LEU C 136 CMO C 202 SITE 5 AC5 19 HOH C 305 HOH C 318 HOH C 370 SITE 1 AC6 3 HIS C 58 VAL C 62 HEM C 201 SITE 1 AC7 21 ALA B 5 HOH B 315 THR D 38 PHE D 41 SITE 2 AC7 21 PHE D 42 HIS D 63 LYS D 66 SER D 70 SITE 3 AC7 21 PHE D 71 LEU D 88 HIS D 92 LEU D 96 SITE 4 AC7 21 ASN D 102 LEU D 106 LEU D 141 CMO D 202 SITE 5 AC7 21 HOH D 310 HOH D 311 HOH D 312 HOH D 323 SITE 6 AC7 21 HOH D 384 SITE 1 AC8 3 HIS D 63 VAL D 67 HEM D 201 CRYST1 63.560 76.283 109.789 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015733 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013109 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009108 0.00000