HEADER LIGASE 07-OCT-18 6IIW TITLE CRYSTAL STRUCTURE OF HUMAN UHRF1 PHD FINGER IN COMPLEX WITH PAF15 COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE UHRF1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: INVERTED CCAAT BOX-BINDING PROTEIN OF 90 KDA,NUCLEAR PROTEIN COMPND 5 95,NUCLEAR ZINC FINGER PROTEIN NP95,HNP95,RING FINGER PROTEIN 106, COMPND 6 RING-TYPE E3 UBIQUITIN TRANSFERASE UHRF1,TRANSCRIPTION FACTOR ICBP90, COMPND 7 UBIQUITIN-LIKE PHD AND RING FINGER DOMAIN-CONTAINING PROTEIN 1, COMPND 8 HUHRF1,UBIQUITIN-LIKE-CONTAINING PHD AND RING FINGER DOMAINS PROTEIN COMPND 9 1; COMPND 10 EC: 2.3.2.27; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 2; COMPND 13 MOLECULE: PCNA-ASSOCIATED FACTOR; COMPND 14 CHAIN: B; COMPND 15 SYNONYM: PAF15; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: UHRF1, ICBP90, NP95, RNF106; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: RSETTA2 (DE3); SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606 KEYWDS DNA METHYLATION, HISTONE MODIFICATION, REPLICATION, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR K.ARITA,S.KORI REVDAT 3 22-NOV-23 6IIW 1 LINK REVDAT 2 18-MAR-20 6IIW 1 JRNL REVDAT 1 09-OCT-19 6IIW 0 JRNL AUTH A.NISHIYAMA,C.B.MULHOLLAND,S.BULTMANN,S.KORI,A.ENDO,Y.SAEKI, JRNL AUTH 2 W.QIN,C.TRUMMER,Y.CHIBA,H.YOKOYAMA,S.KUMAMOTO,T.KAWAKAMI, JRNL AUTH 3 H.HOJO,G.NAGAE,H.ABURATANI,K.TANAKA,K.ARITA,H.LEONHARDT, JRNL AUTH 4 M.NAKANISHI JRNL TITL TWO DISTINCT MODES OF DNMT1 RECRUITMENT ENSURE STABLE JRNL TITL 2 MAINTENANCE DNA METHYLATION. JRNL REF NAT COMMUN V. 11 1222 2020 JRNL REFN ESSN 2041-1723 JRNL PMID 32144273 JRNL DOI 10.1038/S41467-020-15006-4 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.69 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 10653 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 542 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.6997 - 2.6962 1.00 2717 153 0.1702 0.1825 REMARK 3 2 2.6962 - 2.1402 1.00 2505 139 0.1832 0.1873 REMARK 3 3 2.1402 - 1.8696 1.00 2447 131 0.1799 0.2036 REMARK 3 4 1.8696 - 1.6987 1.00 2442 119 0.1901 0.2144 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.520 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 613 REMARK 3 ANGLE : 0.928 827 REMARK 3 CHIRALITY : 0.055 83 REMARK 3 PLANARITY : 0.005 107 REMARK 3 DIHEDRAL : 9.146 530 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 299 THROUGH 308 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.3957 4.6290 -4.0456 REMARK 3 T TENSOR REMARK 3 T11: 0.3353 T22: 0.2682 REMARK 3 T33: 0.4028 T12: 0.0476 REMARK 3 T13: 0.0386 T23: 0.0653 REMARK 3 L TENSOR REMARK 3 L11: 7.9915 L22: 2.4829 REMARK 3 L33: 9.3454 L12: -4.0288 REMARK 3 L13: 2.4723 L23: -3.1447 REMARK 3 S TENSOR REMARK 3 S11: -0.2906 S12: -0.7532 S13: -0.5412 REMARK 3 S21: 0.6337 S22: 0.1932 S23: 0.9753 REMARK 3 S31: -0.3286 S32: -0.2348 S33: 0.2841 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 309 THROUGH 313 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.6049 8.2304 -10.7213 REMARK 3 T TENSOR REMARK 3 T11: 0.3235 T22: 0.2311 REMARK 3 T33: 0.2689 T12: 0.0958 REMARK 3 T13: 0.0024 T23: 0.0164 REMARK 3 L TENSOR REMARK 3 L11: 2.8776 L22: 2.0441 REMARK 3 L33: 8.7266 L12: -0.8248 REMARK 3 L13: 4.7589 L23: -2.4567 REMARK 3 S TENSOR REMARK 3 S11: -0.1147 S12: 0.0263 S13: 0.1826 REMARK 3 S21: -0.0932 S22: -0.1777 S23: 0.3685 REMARK 3 S31: -0.7763 S32: -0.6926 S33: 0.3217 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 314 THROUGH 326 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.9808 2.2148 -9.7083 REMARK 3 T TENSOR REMARK 3 T11: 0.2177 T22: 0.1492 REMARK 3 T33: 0.1679 T12: 0.0180 REMARK 3 T13: 0.0197 T23: 0.0255 REMARK 3 L TENSOR REMARK 3 L11: 2.2628 L22: 2.8033 REMARK 3 L33: 3.7262 L12: -0.5846 REMARK 3 L13: 0.8913 L23: 0.0844 REMARK 3 S TENSOR REMARK 3 S11: 0.0351 S12: 0.0600 S13: -0.0207 REMARK 3 S21: -0.1983 S22: -0.1059 S23: -0.0032 REMARK 3 S31: -0.1392 S32: 0.0893 S33: 0.1197 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 327 THROUGH 332 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.3039 -6.2980 -13.6563 REMARK 3 T TENSOR REMARK 3 T11: 0.3132 T22: 0.1498 REMARK 3 T33: 0.1893 T12: 0.0656 REMARK 3 T13: 0.0249 T23: -0.0062 REMARK 3 L TENSOR REMARK 3 L11: 6.8367 L22: 8.6159 REMARK 3 L33: 4.2298 L12: -1.5723 REMARK 3 L13: 1.5337 L23: -2.8142 REMARK 3 S TENSOR REMARK 3 S11: 0.0976 S12: 0.4197 S13: -0.0901 REMARK 3 S21: -0.8659 S22: -0.1395 S23: -0.0652 REMARK 3 S31: -0.0357 S32: -0.1326 S33: 0.0101 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 333 THROUGH 338 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.0105 -9.0134 -2.6222 REMARK 3 T TENSOR REMARK 3 T11: 0.2691 T22: 0.1541 REMARK 3 T33: 0.1973 T12: 0.0407 REMARK 3 T13: 0.0243 T23: 0.0295 REMARK 3 L TENSOR REMARK 3 L11: 5.5125 L22: 7.2412 REMARK 3 L33: 5.5225 L12: -1.8090 REMARK 3 L13: -3.7571 L23: 1.1314 REMARK 3 S TENSOR REMARK 3 S11: -0.2014 S12: -0.0486 S13: -0.3140 REMARK 3 S21: 0.8148 S22: 0.0733 S23: 0.3558 REMARK 3 S31: 0.7130 S32: -0.0175 S33: -0.1004 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 339 THROUGH 346 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.4505 -1.6073 -11.9030 REMARK 3 T TENSOR REMARK 3 T11: 0.2049 T22: 0.2044 REMARK 3 T33: 0.2121 T12: 0.0494 REMARK 3 T13: 0.0519 T23: 0.0696 REMARK 3 L TENSOR REMARK 3 L11: 5.6805 L22: 7.4591 REMARK 3 L33: 2.6453 L12: -1.6015 REMARK 3 L13: -1.7460 L23: -2.0728 REMARK 3 S TENSOR REMARK 3 S11: -0.1531 S12: -0.1768 S13: 0.1817 REMARK 3 S21: -0.3156 S22: -0.2605 S23: -0.8243 REMARK 3 S31: -0.1420 S32: 0.6861 S33: 0.4496 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 347 THROUGH 351 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.9032 -5.7766 -15.4554 REMARK 3 T TENSOR REMARK 3 T11: 0.3109 T22: 0.3621 REMARK 3 T33: 0.4290 T12: 0.1502 REMARK 3 T13: 0.1394 T23: 0.1201 REMARK 3 L TENSOR REMARK 3 L11: 3.1654 L22: 5.3527 REMARK 3 L33: 3.3189 L12: -0.5576 REMARK 3 L13: 0.3439 L23: -4.2152 REMARK 3 S TENSOR REMARK 3 S11: 0.0714 S12: 0.1141 S13: -0.1466 REMARK 3 S21: -0.7906 S22: -0.5324 S23: -0.8824 REMARK 3 S31: 0.7860 S32: 0.8878 S33: 0.1904 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 352 THROUGH 356 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.2539 -15.9715 -13.9525 REMARK 3 T TENSOR REMARK 3 T11: 0.4124 T22: 0.2506 REMARK 3 T33: 0.3392 T12: 0.1519 REMARK 3 T13: 0.0398 T23: 0.0064 REMARK 3 L TENSOR REMARK 3 L11: 6.3704 L22: 6.4754 REMARK 3 L33: 8.0730 L12: 4.3738 REMARK 3 L13: -4.2932 L23: -3.8085 REMARK 3 S TENSOR REMARK 3 S11: 0.2407 S12: 0.2349 S13: -0.7318 REMARK 3 S21: -0.5499 S22: -0.5129 S23: -1.2379 REMARK 3 S31: 0.8245 S32: 0.2088 S33: 0.3284 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 357 THROUGH 364 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.2851 -9.8512 -3.6747 REMARK 3 T TENSOR REMARK 3 T11: 0.2870 T22: 0.2171 REMARK 3 T33: 0.2015 T12: 0.1164 REMARK 3 T13: 0.0049 T23: 0.0348 REMARK 3 L TENSOR REMARK 3 L11: 3.3748 L22: 4.0147 REMARK 3 L33: 7.3120 L12: -0.0329 REMARK 3 L13: -0.3249 L23: 5.3252 REMARK 3 S TENSOR REMARK 3 S11: 0.0089 S12: -0.5165 S13: -0.2210 REMARK 3 S21: 0.4844 S22: 0.2698 S23: -0.2965 REMARK 3 S31: 0.6463 S32: 0.3022 S33: -0.1526 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 6 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.8228 -10.5752 -12.6941 REMARK 3 T TENSOR REMARK 3 T11: 0.3230 T22: 0.1792 REMARK 3 T33: 0.2717 T12: 0.0215 REMARK 3 T13: -0.0222 T23: -0.0147 REMARK 3 L TENSOR REMARK 3 L11: 3.3294 L22: 4.0953 REMARK 3 L33: 7.1029 L12: -3.6190 REMARK 3 L13: 4.5484 L23: -5.2009 REMARK 3 S TENSOR REMARK 3 S11: 0.5011 S12: 0.2394 S13: -0.3663 REMARK 3 S21: -0.2104 S22: -0.2717 S23: 0.5009 REMARK 3 S31: 0.2713 S32: 0.0307 S33: -0.1458 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6IIW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-OCT-18. REMARK 100 THE DEPOSITION ID IS D_1300009062. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-NOV-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10762 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.699 REMARK 200 RESOLUTION RANGE LOW (A) : 44.030 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 17.20 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.49700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3ASL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES (PH 7.5), 70% (V/V) MPD, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.38233 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 146.76467 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 110.07350 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 183.45583 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 36.69117 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 73.38233 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 146.76467 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 183.45583 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 110.07350 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 36.69117 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 ZN ZN A 404 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 508 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 582 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 102 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 105 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 365 REMARK 465 ASP A 366 REMARK 465 SER B 7 REMARK 465 VAL B 8 REMARK 465 PRO B 9 REMARK 465 GLY B 10 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLY A 299 N REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 317 -154.38 -121.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 583 DISTANCE = 6.64 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 EPE A 406 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 302 SG REMARK 620 2 CYS A 305 SG 110.8 REMARK 620 3 CYS A 313 SG 109.6 112.6 REMARK 620 4 CYS A 316 SG 117.3 96.7 109.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 318 SG REMARK 620 2 CYS A 321 SG 112.0 REMARK 620 3 HIS A 341 ND1 103.0 98.7 REMARK 620 4 CYS A 344 SG 118.2 108.9 114.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 333 SG REMARK 620 2 CYS A 336 SG 106.7 REMARK 620 3 CYS A 360 SG 109.8 111.7 REMARK 620 4 CYS A 363 SG 107.1 109.2 112.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 404 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 362 OE1 REMARK 620 2 GLU A 362 OE2 55.8 REMARK 620 3 GLU A 362 OE1 0.0 55.8 REMARK 620 4 GLU A 362 OE2 55.8 0.0 55.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EPE A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EPE A 406 DBREF 6IIW A 299 366 UNP Q96T88 UHRF1_HUMAN 299 366 DBREF 6IIW B 1 10 UNP Q15004 PAF15_HUMAN 2 11 SEQRES 1 A 68 GLY PRO SER CYS LYS HIS CYS LYS ASP ASP VAL ASN ARG SEQRES 2 A 68 LEU CYS ARG VAL CYS ALA CYS HIS LEU CYS GLY GLY ARG SEQRES 3 A 68 GLN ASP PRO ASP LYS GLN LEU MET CYS ASP GLU CYS ASP SEQRES 4 A 68 MET ALA PHE HIS ILE TYR CYS LEU ASP PRO PRO LEU SER SEQRES 5 A 68 SER VAL PRO SER GLU ASP GLU TRP TYR CYS PRO GLU CYS SEQRES 6 A 68 ARG ASN ASP SEQRES 1 B 10 VAL ARG THR LYS ALA ASP SER VAL PRO GLY HET ZN A 401 1 HET ZN A 402 1 HET ZN A 403 1 HET ZN A 404 1 HET EPE A 405 15 HET EPE A 406 11 HETNAM ZN ZINC ION HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETSYN EPE HEPES FORMUL 3 ZN 4(ZN 2+) FORMUL 7 EPE 2(C8 H18 N2 O4 S) FORMUL 9 HOH *96(H2 O) HELIX 1 AA1 ASP A 326 ASP A 328 5 3 SHEET 1 AA1 2 GLN A 330 MET A 332 0 SHEET 2 AA1 2 ALA A 339 HIS A 341 -1 O PHE A 340 N LEU A 331 LINK SG CYS A 302 ZN ZN A 401 1555 1555 2.27 LINK SG CYS A 305 ZN ZN A 401 1555 1555 2.35 LINK SG CYS A 313 ZN ZN A 401 1555 1555 2.28 LINK SG CYS A 316 ZN ZN A 401 1555 1555 2.29 LINK SG CYS A 318 ZN ZN A 402 1555 1555 2.29 LINK SG CYS A 321 ZN ZN A 402 1555 1555 2.31 LINK SG CYS A 333 ZN ZN A 403 1555 1555 2.36 LINK SG CYS A 336 ZN ZN A 403 1555 1555 2.34 LINK ND1 HIS A 341 ZN ZN A 402 1555 1555 2.10 LINK SG CYS A 344 ZN ZN A 402 1555 1555 2.26 LINK SG CYS A 360 ZN ZN A 403 1555 1555 2.33 LINK OE1 GLU A 362 ZN ZN A 404 1555 1555 2.30 LINK OE2 GLU A 362 ZN ZN A 404 1555 1555 2.38 LINK OE1 GLU A 362 ZN ZN A 404 1555 8555 2.09 LINK OE2 GLU A 362 ZN ZN A 404 1555 8555 2.26 LINK SG CYS A 363 ZN ZN A 403 1555 1555 2.24 CISPEP 1 ASP A 346 PRO A 347 0 1.16 SITE 1 AC1 4 CYS A 302 CYS A 305 CYS A 313 CYS A 316 SITE 1 AC2 4 CYS A 318 CYS A 321 HIS A 341 CYS A 344 SITE 1 AC3 4 CYS A 333 CYS A 336 CYS A 360 CYS A 363 SITE 1 AC4 2 HIS A 319 GLU A 362 SITE 1 AC5 8 GLY A 299 PRO A 300 LYS A 306 ASP A 307 SITE 2 AC5 8 ASP A 308 VAL A 309 ASP A 356 HOH A 527 SITE 1 AC6 3 TYR A 359 CYS A 363 ARG A 364 CRYST1 36.716 36.716 220.147 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027236 0.015725 0.000000 0.00000 SCALE2 0.000000 0.031450 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004542 0.00000