HEADER TOXIN 23-OCT-18 6IMP TITLE CRYSTAL STRUCTURE OF ALPHA-BETA HYDROLASE (ABH) FROM VIBRIO VULNIFICUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: RTX TOXIN RTXA; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: HYDROLASE FOLD DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO VULNIFICUS MO6-24/O; SOURCE 3 ORGANISM_TAXID: 914127; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS VIRULENCE, HYDROLASE, ALPHA-BETA FOLD, TOXINS, TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR M.H.KIM,J.HWANG REVDAT 3 27-MAR-24 6IMP 1 REMARK REVDAT 2 19-FEB-20 6IMP 1 JRNL REVDAT 1 21-AUG-19 6IMP 0 JRNL AUTH Y.LEE,B.S.KIM,S.CHOI,E.Y.LEE,S.PARK,J.HWANG,Y.KWON,J.HYUN, JRNL AUTH 2 C.LEE,J.F.KIM,S.H.EOM,M.H.KIM JRNL TITL MAKES CATERPILLARS FLOPPY-LIKE EFFECTOR-CONTAINING MARTX JRNL TITL 2 TOXINS REQUIRE HOST ADP-RIBOSYLATION FACTOR (ARF) PROTEINS JRNL TITL 3 FOR SYSTEMIC PATHOGENICITY. JRNL REF PROC.NATL.ACAD.SCI.USA V. 116 18031 2019 JRNL REFN ESSN 1091-6490 JRNL PMID 31427506 JRNL DOI 10.1073/PNAS.1905095116 REMARK 2 REMARK 2 RESOLUTION. 2.62 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.62 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.84 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 21082 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.240 REMARK 3 R VALUE (WORKING SET) : 0.237 REMARK 3 FREE R VALUE : 0.287 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1071 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.62 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1366 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.76 REMARK 3 BIN R VALUE (WORKING SET) : 0.4200 REMARK 3 BIN FREE R VALUE SET COUNT : 71 REMARK 3 BIN FREE R VALUE : 0.4730 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4277 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 21 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 92.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.19000 REMARK 3 B22 (A**2) : -0.12000 REMARK 3 B33 (A**2) : 0.32000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.669 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.348 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.919 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4344 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5856 ; 1.430 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 560 ;10.838 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 203 ;38.183 ;25.222 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 752 ;18.428 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;17.372 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 638 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3313 ; 0.014 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2252 ; 6.666 ; 9.065 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2808 ; 9.932 ;13.575 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2092 ; 7.326 ; 9.405 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6577 ;14.801 ;75.234 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6IMP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-NOV-18. REMARK 100 THE DEPOSITION ID IS D_1300009490. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-DEC-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22210 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : 0.07700 REMARK 200 FOR THE DATA SET : 23.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.4 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : 0.59700 REMARK 200 R SYM FOR SHELL (I) : 0.59700 REMARK 200 FOR SHELL : 1.870 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM FORMATE, 25% PEG 3350, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.05300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 82.44500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.84050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 82.44500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.05300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.84050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 2898 REMARK 465 MET A 2899 REMARK 465 ALA A 2900 REMARK 465 LEU A 2901 REMARK 465 SER A 2902 REMARK 465 GLY A 2903 REMARK 465 ASN A 2904 REMARK 465 GLU A 2905 REMARK 465 LYS A 2906 REMARK 465 HIS A 2907 REMARK 465 ALA A 2984 REMARK 465 ALA A 2985 REMARK 465 SER A 2986 REMARK 465 SER A 2987 REMARK 465 GLU A 2988 REMARK 465 GLY A 2989 REMARK 465 GLU A 2990 REMARK 465 THR A 2991 REMARK 465 SER A 2992 REMARK 465 ALA A 2993 REMARK 465 THR A 2994 REMARK 465 SER A 2995 REMARK 465 GLY A 2996 REMARK 465 ASN A 3205 REMARK 465 ALA A 3206 REMARK 465 GLU A 3207 REMARK 465 GLN A 3208 REMARK 465 ALA A 3209 REMARK 465 ALA A 3210 REMARK 465 VAL A 3211 REMARK 465 GLU A 3212 REMARK 465 ALA A 3213 REMARK 465 GLY A 3214 REMARK 465 GLU A 3215 REMARK 465 VAL A 3216 REMARK 465 LEU A 3217 REMARK 465 LYS A 3218 REMARK 465 GLY A 3219 REMARK 465 LEU A 3220 REMARK 465 ALA B 2898 REMARK 465 MET B 2899 REMARK 465 ALA B 2900 REMARK 465 LEU B 2901 REMARK 465 SER B 2902 REMARK 465 GLY B 2903 REMARK 465 ASN B 2904 REMARK 465 GLU B 2905 REMARK 465 LYS B 2906 REMARK 465 HIS B 2907 REMARK 465 LYS B 2908 REMARK 465 GLU B 2909 REMARK 465 ASN B 2910 REMARK 465 ALA B 2984 REMARK 465 ALA B 2985 REMARK 465 SER B 2986 REMARK 465 SER B 2987 REMARK 465 GLU B 2988 REMARK 465 GLY B 2989 REMARK 465 GLU B 2990 REMARK 465 THR B 2991 REMARK 465 SER B 2992 REMARK 465 ALA B 2993 REMARK 465 THR B 2994 REMARK 465 SER B 2995 REMARK 465 GLY B 2996 REMARK 465 PHE B 3204 REMARK 465 ASN B 3205 REMARK 465 ALA B 3206 REMARK 465 GLU B 3207 REMARK 465 GLN B 3208 REMARK 465 ALA B 3209 REMARK 465 ALA B 3210 REMARK 465 VAL B 3211 REMARK 465 GLU B 3212 REMARK 465 ALA B 3213 REMARK 465 GLY B 3214 REMARK 465 GLU B 3215 REMARK 465 VAL B 3216 REMARK 465 LEU B 3217 REMARK 465 LYS B 3218 REMARK 465 GLY B 3219 REMARK 465 LEU B 3220 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CB ASN B 2915 OD1 ASP B 2916 1.10 REMARK 500 CA ASN B 2915 OD1 ASP B 2916 1.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A2920 C - N - CD ANGL. DEV. = 16.7 DEGREES REMARK 500 ILE B2913 CB - CA - C ANGL. DEV. = -15.5 DEGREES REMARK 500 GLU B2914 CB - CA - C ANGL. DEV. = -26.8 DEGREES REMARK 500 GLU B2914 N - CA - CB ANGL. DEV. = -10.9 DEGREES REMARK 500 GLU B2914 N - CA - C ANGL. DEV. = 26.7 DEGREES REMARK 500 PRO B2919 C - N - CA ANGL. DEV. = -14.4 DEGREES REMARK 500 PRO B2919 C - N - CD ANGL. DEV. = 19.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A2909 44.43 -92.47 REMARK 500 LEU A2926 -86.72 -124.83 REMARK 500 SER A3075 -127.23 55.36 REMARK 500 ALA A3117 -133.41 58.24 REMARK 500 LEU A3203 -42.47 -132.21 REMARK 500 LEU B2926 -157.98 -133.91 REMARK 500 SER B2927 120.97 -34.06 REMARK 500 SER B3075 -124.60 53.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 2912 ILE A 2913 -148.26 REMARK 500 THR A 2918 PRO A 2919 -140.87 REMARK 500 SER A 2925 LEU A 2926 -129.36 REMARK 500 ASN B 2915 ASP B 2916 -48.44 REMARK 500 ASP B 2916 GLY B 2917 106.80 REMARK 500 GLY B 2917 THR B 2918 103.69 REMARK 500 THR B 2918 PRO B 2919 -84.55 REMARK 500 PRO B 2919 PRO B 2920 -125.36 REMARK 500 LEU B 2926 SER B 2927 -148.81 REMARK 500 SER B 2927 PRO B 2928 -149.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A3190 0.28 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B3309 DISTANCE = 6.21 ANGSTROMS REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE HAS BEEN DEPOSITED TO DATABASE WITH ACCESSION ID WP_ REMARK 999 015728045.1. DBREF 6IMP A 2898 3220 PDB 6IMP 6IMP 2898 3220 DBREF 6IMP B 2898 3220 PDB 6IMP 6IMP 2898 3220 SEQRES 1 A 323 ALA MET ALA LEU SER GLY ASN GLU LYS HIS LYS GLU ASN SEQRES 2 A 323 VAL ALA ILE GLU ASN ASP GLY THR PRO PRO ARG ASP LYS SEQRES 3 A 323 GLU SER LEU SER PRO LEU THR ARG PHE LEU ASN ASN GLU SEQRES 4 A 323 LEU TYR GLY GLU LYS ASP ALA ARG ARG LYS ILE GLY GLU SEQRES 5 A 323 ILE THR GLN THR LEU LEU ASP HIS ALA VAL GLU ASN GLY SEQRES 6 A 323 GLU SER GLN LYS VAL THR LEU LYS GLY GLU ALA GLY ARG SEQRES 7 A 323 LEU THR GLY TYR TYR HIS GLN GLY ALA ALA SER SER GLU SEQRES 8 A 323 GLY GLU THR SER ALA THR SER GLY LYS VAL VAL LEU PHE SEQRES 9 A 323 LEU HIS GLY SER GLY SER SER ALA GLU GLU GLN ALA SER SEQRES 10 A 323 GLU ILE ARG ASN HIS TYR GLN LYS GLN GLY ILE ASP MET SEQRES 11 A 323 LEU ALA VAL ASN LEU ARG GLY TYR GLY GLU SER ASP GLY SEQRES 12 A 323 GLY PRO SER GLU LYS GLY LEU TYR GLN ASP ALA ARG THR SEQRES 13 A 323 MET PHE ASN TYR LEU VAL ASN ASP LYS GLY ILE ASP PRO SEQRES 14 A 323 SER ASN ILE ILE ILE HIS GLY TYR SER MET GLY GLY PRO SEQRES 15 A 323 ILE ALA ALA ASP LEU ALA ARG TYR ALA ALA GLN ASN GLY SEQRES 16 A 323 GLN ALA VAL SER GLY LEU LEU LEU ASP ARG PRO MET PRO SEQRES 17 A 323 SER MET THR LYS ALA ILE THR ALA HIS GLU VAL ALA ASN SEQRES 18 A 323 PRO ALA GLY ILE VAL GLY ALA ILE ALA LYS ALA VAL ASN SEQRES 19 A 323 GLY GLN PHE SER VAL GLU LYS ASN LEU LYS GLY LEU PRO SEQRES 20 A 323 LYS GLU THR PRO ILE LEU LEU LEU THR ASP ASN GLU GLY SEQRES 21 A 323 LEU GLY GLU GLU GLY GLU LYS LEU ARG ALA LYS LEU ALA SEQRES 22 A 323 ILE ALA GLY TYR ASN VAL THR GLY GLU GLN THR PHE TYR SEQRES 23 A 323 GLY HIS GLU ALA SER ASN ARG LEU MET GLY GLN TYR ALA SEQRES 24 A 323 ASP GLN ILE VAL SER GLY LEU PHE ASN ALA GLU GLN ALA SEQRES 25 A 323 ALA VAL GLU ALA GLY GLU VAL LEU LYS GLY LEU SEQRES 1 B 323 ALA MET ALA LEU SER GLY ASN GLU LYS HIS LYS GLU ASN SEQRES 2 B 323 VAL ALA ILE GLU ASN ASP GLY THR PRO PRO ARG ASP LYS SEQRES 3 B 323 GLU SER LEU SER PRO LEU THR ARG PHE LEU ASN ASN GLU SEQRES 4 B 323 LEU TYR GLY GLU LYS ASP ALA ARG ARG LYS ILE GLY GLU SEQRES 5 B 323 ILE THR GLN THR LEU LEU ASP HIS ALA VAL GLU ASN GLY SEQRES 6 B 323 GLU SER GLN LYS VAL THR LEU LYS GLY GLU ALA GLY ARG SEQRES 7 B 323 LEU THR GLY TYR TYR HIS GLN GLY ALA ALA SER SER GLU SEQRES 8 B 323 GLY GLU THR SER ALA THR SER GLY LYS VAL VAL LEU PHE SEQRES 9 B 323 LEU HIS GLY SER GLY SER SER ALA GLU GLU GLN ALA SER SEQRES 10 B 323 GLU ILE ARG ASN HIS TYR GLN LYS GLN GLY ILE ASP MET SEQRES 11 B 323 LEU ALA VAL ASN LEU ARG GLY TYR GLY GLU SER ASP GLY SEQRES 12 B 323 GLY PRO SER GLU LYS GLY LEU TYR GLN ASP ALA ARG THR SEQRES 13 B 323 MET PHE ASN TYR LEU VAL ASN ASP LYS GLY ILE ASP PRO SEQRES 14 B 323 SER ASN ILE ILE ILE HIS GLY TYR SER MET GLY GLY PRO SEQRES 15 B 323 ILE ALA ALA ASP LEU ALA ARG TYR ALA ALA GLN ASN GLY SEQRES 16 B 323 GLN ALA VAL SER GLY LEU LEU LEU ASP ARG PRO MET PRO SEQRES 17 B 323 SER MET THR LYS ALA ILE THR ALA HIS GLU VAL ALA ASN SEQRES 18 B 323 PRO ALA GLY ILE VAL GLY ALA ILE ALA LYS ALA VAL ASN SEQRES 19 B 323 GLY GLN PHE SER VAL GLU LYS ASN LEU LYS GLY LEU PRO SEQRES 20 B 323 LYS GLU THR PRO ILE LEU LEU LEU THR ASP ASN GLU GLY SEQRES 21 B 323 LEU GLY GLU GLU GLY GLU LYS LEU ARG ALA LYS LEU ALA SEQRES 22 B 323 ILE ALA GLY TYR ASN VAL THR GLY GLU GLN THR PHE TYR SEQRES 23 B 323 GLY HIS GLU ALA SER ASN ARG LEU MET GLY GLN TYR ALA SEQRES 24 B 323 ASP GLN ILE VAL SER GLY LEU PHE ASN ALA GLU GLN ALA SEQRES 25 B 323 ALA VAL GLU ALA GLY GLU VAL LEU LYS GLY LEU FORMUL 3 HOH *21(H2 O) HELIX 1 AA1 SER A 2927 GLY A 2939 1 13 HELIX 2 AA2 GLU A 2940 LYS A 2946 1 7 HELIX 3 AA3 GLY A 2948 ASN A 2961 1 14 HELIX 4 AA4 SER A 3008 LYS A 3022 1 15 HELIX 5 AA5 SER A 3043 LYS A 3062 1 20 HELIX 6 AA6 ASP A 3065 SER A 3067 5 3 HELIX 7 AA7 MET A 3076 GLN A 3090 1 15 HELIX 8 AA8 SER A 3106 HIS A 3114 1 9 HELIX 9 AA9 ALA A 3120 VAL A 3130 1 11 HELIX 10 AB1 SER A 3135 LYS A 3141 1 7 HELIX 11 AB2 GLU A 3156 ALA A 3172 1 17 HELIX 12 AB3 ALA A 3187 VAL A 3200 1 14 HELIX 13 AB4 SER A 3201 LEU A 3203 5 3 HELIX 14 AB5 SER B 2927 TYR B 2938 1 12 HELIX 15 AB6 GLU B 2940 LYS B 2946 1 7 HELIX 16 AB7 GLY B 2948 GLY B 2962 1 15 HELIX 17 AB8 SER B 3008 GLU B 3015 1 8 HELIX 18 AB9 ILE B 3016 GLN B 3023 1 8 HELIX 19 AC1 SER B 3043 ASP B 3061 1 19 HELIX 20 AC2 ASP B 3065 SER B 3067 5 3 HELIX 21 AC3 MET B 3076 GLN B 3090 1 15 HELIX 22 AC4 SER B 3106 GLU B 3115 1 10 HELIX 23 AC5 ALA B 3120 VAL B 3130 1 11 HELIX 24 AC6 SER B 3135 LYS B 3141 1 7 HELIX 25 AC7 GLU B 3156 GLY B 3173 1 18 HELIX 26 AC8 ALA B 3187 SER B 3201 1 15 SHEET 1 AA1 8 SER A2964 LYS A2970 0 SHEET 2 AA1 8 ARG A2975 HIS A2981 -1 O GLY A2978 N VAL A2967 SHEET 3 AA1 8 ASP A3026 VAL A3030 -1 O MET A3027 N HIS A2981 SHEET 4 AA1 8 VAL A2998 LEU A3002 1 N VAL A2999 O LEU A3028 SHEET 5 AA1 8 ILE A3069 TYR A3074 1 O ILE A3070 N LEU A3000 SHEET 6 AA1 8 GLY A3097 ASP A3101 1 O LEU A3099 N ILE A3071 SHEET 7 AA1 8 ILE A3149 THR A3153 1 O LEU A3150 N LEU A3100 SHEET 8 AA1 8 GLU A3179 GLN A3180 1 O GLU A3179 N THR A3153 SHEET 1 AA2 8 SER B2964 LYS B2970 0 SHEET 2 AA2 8 ARG B2975 HIS B2981 -1 O TYR B2980 N GLN B2965 SHEET 3 AA2 8 ASP B3026 VAL B3030 -1 O MET B3027 N HIS B2981 SHEET 4 AA2 8 VAL B2998 LEU B3002 1 N VAL B2999 O LEU B3028 SHEET 5 AA2 8 ILE B3069 TYR B3074 1 O ILE B3070 N LEU B3000 SHEET 6 AA2 8 GLY B3097 ASP B3101 1 O LEU B3099 N ILE B3071 SHEET 7 AA2 8 ILE B3149 LEU B3152 1 O LEU B3150 N LEU B3098 SHEET 8 AA2 8 VAL B3176 THR B3177 1 O THR B3177 N LEU B3151 CISPEP 1 PRO A 2919 PRO A 2920 0 -28.95 CRYST1 44.106 99.681 164.890 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022673 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010032 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006065 0.00000