HEADER HYDROLASE 24-OCT-18 6IMZ TITLE CRYSTAL STRUCTURE OF MTH1 IN COMPLEX WITH 18-CROWN-6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 7,8-DIHYDRO-8-OXOGUANINE TRIPHOSPHATASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 2-HYDROXY-DATP DIPHOSPHATASE,8-OXO-DGTPASE,NUCLEOSIDE COMPND 5 DIPHOSPHATE-LINKED MOIETY X MOTIF 1,NUDIX MOTIF 1; COMPND 6 EC: 3.6.1.55,3.6.1.56; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NUDT1, MTH1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HUMAN NUDIX HYDROLASE, 8-OXO-DGTP, CANCER, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR T.YOKOYAMA,Y.KOSAKA,K.MATSUMOTO,R.KITAKAMI,Y.NABESHIMA,M.MIZUGUCHI REVDAT 2 27-MAR-24 6IMZ 1 LINK REVDAT 1 30-OCT-19 6IMZ 0 JRNL AUTH T.YOKOYAMA,Y.KOSAKA,K.MATSUMOTO,R.KITAKAMI,Y.NABESHIMA, JRNL AUTH 2 M.MIZUGUCHI JRNL TITL CROWN ETHERS AS TRANSTHYRETIN AMYLOIDOGENESIS INHIBITOR JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1-2155_1069: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.02 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 9503 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 476 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.0199 - 3.0287 0.99 3111 164 0.1808 0.1939 REMARK 3 2 3.0287 - 2.4043 1.00 2989 158 0.2323 0.2849 REMARK 3 3 2.4043 - 2.1005 0.99 2927 154 0.2211 0.2815 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.680 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 1454 REMARK 3 ANGLE : 0.817 1947 REMARK 3 CHIRALITY : 0.077 193 REMARK 3 PLANARITY : 0.005 244 REMARK 3 DIHEDRAL : 19.457 561 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6IMZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-NOV-18. REMARK 100 THE DEPOSITION ID IS D_1300009391. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-APR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9505 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 39.020 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 9.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG3350, 1.8 MM ZNSO4, 6% SUCROSE, REMARK 280 0.1 M BIS-TRIS PH 6.1, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 33.21700 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 33.21700 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 70.09100 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 33.21700 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 33.21700 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 70.09100 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 33.21700 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 33.21700 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 70.09100 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 33.21700 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 33.21700 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 70.09100 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 33.21700 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 33.21700 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 70.09100 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 33.21700 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 33.21700 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 70.09100 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 33.21700 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 33.21700 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 70.09100 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 33.21700 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 33.21700 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 70.09100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 A 203 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 100 CG CD OE1 OE2 REMARK 470 ARG A 151 CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 90 74.11 -117.79 REMARK 500 ASP A 143 26.37 -157.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 41 OE1 REMARK 620 2 GLU A 41 OE2 62.0 REMARK 620 3 HIS A 162 NE2 89.9 149.3 REMARK 620 4 HIS A 163 NE2 81.2 137.3 12.7 REMARK 620 5 HIS A 164 NE2 98.2 109.0 85.9 96.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 206 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 65 ND1 REMARK 620 2 CYS A 87 SG 117.1 REMARK 620 3 HOH A 353 O 116.0 117.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 82 OD2 REMARK 620 2 HIS A 84 NE2 112.4 REMARK 620 3 HIS A 159 ND1 114.8 104.2 REMARK 620 4 HIS A 161 NE2 102.1 108.6 114.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue O4B A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue VGH A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue O4B A 207 DBREF 6IMZ A 3 156 UNP P36639 8ODP_HUMAN 44 197 SEQADV 6IMZ MET A 2 UNP P36639 INITIATING METHIONINE SEQADV 6IMZ LEU A 157 UNP P36639 EXPRESSION TAG SEQADV 6IMZ GLU A 158 UNP P36639 EXPRESSION TAG SEQADV 6IMZ HIS A 159 UNP P36639 EXPRESSION TAG SEQADV 6IMZ HIS A 160 UNP P36639 EXPRESSION TAG SEQADV 6IMZ HIS A 161 UNP P36639 EXPRESSION TAG SEQADV 6IMZ HIS A 162 UNP P36639 EXPRESSION TAG SEQADV 6IMZ HIS A 163 UNP P36639 EXPRESSION TAG SEQADV 6IMZ HIS A 164 UNP P36639 EXPRESSION TAG SEQRES 1 A 163 MET ALA SER ARG LEU TYR THR LEU VAL LEU VAL LEU GLN SEQRES 2 A 163 PRO GLN ARG VAL LEU LEU GLY MET LYS LYS ARG GLY PHE SEQRES 3 A 163 GLY ALA GLY ARG TRP ASN GLY PHE GLY GLY LYS VAL GLN SEQRES 4 A 163 GLU GLY GLU THR ILE GLU ASP GLY ALA ARG ARG GLU LEU SEQRES 5 A 163 GLN GLU GLU SER GLY LEU THR VAL ASP ALA LEU HIS LYS SEQRES 6 A 163 VAL GLY GLN ILE VAL PHE GLU PHE VAL GLY GLU PRO GLU SEQRES 7 A 163 LEU MET ASP VAL HIS VAL PHE CYS THR ASP SER ILE GLN SEQRES 8 A 163 GLY THR PRO VAL GLU SER ASP GLU MET ARG PRO CYS TRP SEQRES 9 A 163 PHE GLN LEU ASP GLN ILE PRO PHE LYS ASP MET TRP PRO SEQRES 10 A 163 ASP ASP SER TYR TRP PHE PRO LEU LEU LEU GLN LYS LYS SEQRES 11 A 163 LYS PHE HIS GLY TYR PHE LYS PHE GLN GLY GLN ASP THR SEQRES 12 A 163 ILE LEU ASP TYR THR LEU ARG GLU VAL ASP THR VAL LEU SEQRES 13 A 163 GLU HIS HIS HIS HIS HIS HIS HET ZN A 201 1 HET ZN A 202 1 HET SO4 A 203 5 HET O4B A 204 18 HET VGH A 205 39 HET ZN A 206 1 HET O4B A 207 18 HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION HETNAM O4B 1,4,7,10,13,16-HEXAOXACYCLOOCTADECANE HETNAM VGH 3-[(1R)-1-(2,6-DICHLORO-3-FLUOROPHENYL)ETHOXY]-5-(1- HETNAM 2 VGH PIPERIDIN-4-YL-1H-PYRAZOL-4-YL)PYRIDIN-2-AMINE HETSYN VGH CRIZOTINIB FORMUL 2 ZN 3(ZN 2+) FORMUL 4 SO4 O4 S 2- FORMUL 5 O4B 2(C12 H24 O6) FORMUL 6 VGH C21 H22 CL2 F N5 O FORMUL 9 HOH *64(H2 O) HELIX 1 AA1 THR A 44 GLY A 58 1 15 HELIX 2 AA2 ASP A 109 ILE A 111 5 3 HELIX 3 AA3 PRO A 112 MET A 116 5 5 HELIX 4 AA4 TRP A 117 PRO A 118 5 2 HELIX 5 AA5 ASP A 119 GLN A 129 1 11 SHEET 1 AA1 4 TRP A 32 ASN A 33 0 SHEET 2 AA1 4 ARG A 17 LYS A 23 -1 N GLY A 21 O ASN A 33 SHEET 3 AA1 4 SER A 4 LEU A 13 -1 N VAL A 12 O LEU A 19 SHEET 4 AA1 4 MET A 101 GLN A 107 0 SHEET 1 AA2 7 PHE A 35 LYS A 38 0 SHEET 2 AA2 7 SER A 4 LEU A 13 -1 N VAL A 10 O PHE A 35 SHEET 3 AA2 7 ARG A 17 LYS A 23 -1 O LEU A 19 N VAL A 12 SHEET 4 AA2 7 LEU A 80 THR A 88 0 SHEET 5 AA2 7 HIS A 65 PHE A 74 -1 N HIS A 65 O CYS A 87 SHEET 6 AA2 7 LYS A 132 GLN A 140 1 O PHE A 139 N GLU A 73 SHEET 7 AA2 7 THR A 144 VAL A 153 -1 O LEU A 146 N LYS A 138 SHEET 1 AA3 2 THR A 60 VAL A 61 0 SHEET 2 AA3 2 ILE A 91 GLN A 92 -1 O GLN A 92 N THR A 60 LINK OE1 GLU A 41 ZN ZN A 202 1555 1555 2.20 LINK OE2 GLU A 41 ZN ZN A 202 1555 1555 2.00 LINK ND1 HIS A 65 ZN ZN A 206 1555 1555 2.10 LINK OD2 ASP A 82 ZN ZN A 201 1555 1555 1.96 LINK NE2 HIS A 84 ZN ZN A 201 1555 1555 2.05 LINK SG CYS A 87 ZN ZN A 206 1555 1555 2.29 LINK ND1 HIS A 159 ZN ZN A 201 1555 1555 2.01 LINK NE2 HIS A 161 ZN ZN A 201 1555 1555 2.01 LINK NE2 HIS A 162 ZN ZN A 202 1555 8555 1.98 LINK NE2 HIS A 163 ZN ZN A 202 1555 8555 2.03 LINK NE2 HIS A 164 ZN ZN A 202 1555 1555 1.99 LINK ZN ZN A 206 O HOH A 353 1555 1555 2.30 SITE 1 AC1 4 ASP A 82 HIS A 84 HIS A 159 HIS A 161 SITE 1 AC2 4 GLU A 41 HIS A 162 HIS A 163 HIS A 164 SITE 1 AC3 4 HIS A 161 HIS A 162 HIS A 163 HIS A 164 SITE 1 AC4 5 GLU A 73 VAL A 75 GLY A 76 LYS A 138 SITE 2 AC4 5 ASP A 147 SITE 1 AC5 10 TYR A 7 LEU A 9 PHE A 27 PHE A 72 SITE 2 AC5 10 PHE A 74 MET A 81 VAL A 83 TRP A 117 SITE 3 AC5 10 ASP A 119 GLN A 142 SITE 1 AC6 3 HIS A 65 CYS A 87 HOH A 353 SITE 1 AC7 8 TYR A 122 PRO A 125 LEU A 126 GLN A 129 SITE 2 AC7 8 LYS A 130 LYS A 131 LEU A 150 GLU A 152 CRYST1 66.434 66.434 140.182 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015053 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015053 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007134 0.00000