HEADER TRANSFERASE 25-OCT-18 6INI TITLE A GLYCOSYLTRANSFERASE COMPLEX WITH UDP AND THE PRODUCT COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-GLYCOSYLTRANSFERASE 76G1; COMPND 3 CHAIN: A; COMPND 4 EC: 2.4.1.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STEVIA REBAUDIANA; SOURCE 3 ORGANISM_COMMON: STEVIA; SOURCE 4 ORGANISM_TAXID: 55670; SOURCE 5 GENE: UGT76G1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS COMPLEX, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR X.ZHU,T.YANG,J.H.NAISMITH REVDAT 2 22-NOV-23 6INI 1 REMARK REVDAT 1 31-JUL-19 6INI 0 JRNL AUTH T.YANG,J.ZHANG,D.KE,W.YANG,M.TANG,J.JIANG,G.CHENG,J.LI, JRNL AUTH 2 W.CHENG,Y.WEI,Q.LI,J.H.NAISMITH,X.ZHU JRNL TITL HYDROPHOBIC RECOGNITION ALLOWS THE GLYCOSYLTRANSFERASE JRNL TITL 2 UGT76G1 TO CATALYZE ITS SUBSTRATE IN TWO ORIENTATIONS. JRNL REF NAT COMMUN V. 10 3214 2019 JRNL REFN ESSN 2041-1723 JRNL PMID 31324778 JRNL DOI 10.1038/S41467-019-11154-4 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 51453 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2725 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3773 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.33 REMARK 3 BIN R VALUE (WORKING SET) : 0.2380 REMARK 3 BIN FREE R VALUE SET COUNT : 222 REMARK 3 BIN FREE R VALUE : 0.2470 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3607 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 121 REMARK 3 SOLVENT ATOMS : 273 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.64000 REMARK 3 B22 (A**2) : -0.64000 REMARK 3 B33 (A**2) : 2.08000 REMARK 3 B12 (A**2) : -0.32000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.095 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.093 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.067 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.250 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.974 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.965 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3883 ; 0.008 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3587 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5308 ; 1.627 ; 1.685 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8356 ; 1.376 ; 1.610 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 465 ; 6.874 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 202 ;35.846 ;22.079 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 655 ;13.432 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;16.749 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 514 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4216 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 818 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1821 ; 1.544 ; 1.617 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1820 ; 1.542 ; 1.615 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2281 ; 2.287 ; 2.421 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2282 ; 2.288 ; 2.423 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2062 ; 2.664 ; 1.984 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2062 ; 2.664 ; 1.984 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3022 ; 4.032 ; 2.865 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4429 ; 6.146 ;20.568 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4426 ; 6.148 ;20.535 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 11 A 76 REMARK 3 ORIGIN FOR THE GROUP (A): 32.2469 -7.2906 8.7553 REMARK 3 T TENSOR REMARK 3 T11: 0.1058 T22: 0.0268 REMARK 3 T33: 0.2028 T12: -0.0218 REMARK 3 T13: 0.0893 T23: 0.0070 REMARK 3 L TENSOR REMARK 3 L11: 2.5562 L22: 1.8487 REMARK 3 L33: 1.6861 L12: 1.0750 REMARK 3 L13: -0.6625 L23: -0.1831 REMARK 3 S TENSOR REMARK 3 S11: 0.2103 S12: -0.0998 S13: 0.4978 REMARK 3 S21: 0.1900 S22: -0.0260 S23: 0.2611 REMARK 3 S31: -0.2401 S32: 0.1572 S33: -0.1843 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 77 A 139 REMARK 3 ORIGIN FOR THE GROUP (A): 39.7550 -5.2440 1.5320 REMARK 3 T TENSOR REMARK 3 T11: 0.0925 T22: 0.0360 REMARK 3 T33: 0.1424 T12: -0.0258 REMARK 3 T13: 0.0472 T23: 0.0338 REMARK 3 L TENSOR REMARK 3 L11: 2.9417 L22: 2.2851 REMARK 3 L33: 1.1643 L12: 0.8264 REMARK 3 L13: -0.2954 L23: -0.0584 REMARK 3 S TENSOR REMARK 3 S11: 0.0687 S12: 0.0064 S13: 0.3798 REMARK 3 S21: 0.0383 S22: 0.0470 S23: 0.1198 REMARK 3 S31: -0.2118 S32: 0.0249 S33: -0.1157 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 140 A 262 REMARK 3 ORIGIN FOR THE GROUP (A): 31.7708 -23.7587 -7.5048 REMARK 3 T TENSOR REMARK 3 T11: 0.0983 T22: 0.1028 REMARK 3 T33: 0.0916 T12: -0.0174 REMARK 3 T13: 0.0200 T23: 0.0381 REMARK 3 L TENSOR REMARK 3 L11: 1.3867 L22: 1.4076 REMARK 3 L33: 0.7902 L12: 0.5711 REMARK 3 L13: -0.2069 L23: -0.2152 REMARK 3 S TENSOR REMARK 3 S11: -0.1015 S12: 0.3425 S13: 0.0188 REMARK 3 S21: -0.2704 S22: 0.1394 S23: 0.0245 REMARK 3 S31: 0.0268 S32: 0.0023 S33: -0.0379 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 263 A 324 REMARK 3 ORIGIN FOR THE GROUP (A): 4.7151 -15.5820 -4.7122 REMARK 3 T TENSOR REMARK 3 T11: 0.0914 T22: 0.2172 REMARK 3 T33: 0.3903 T12: 0.0497 REMARK 3 T13: 0.0044 T23: 0.2559 REMARK 3 L TENSOR REMARK 3 L11: 3.6615 L22: 2.7677 REMARK 3 L33: 1.8761 L12: -0.1026 REMARK 3 L13: -1.1494 L23: -0.3181 REMARK 3 S TENSOR REMARK 3 S11: 0.1341 S12: 0.6406 S13: 0.7674 REMARK 3 S21: -0.3388 S22: 0.2041 S23: 0.3918 REMARK 3 S31: -0.2137 S32: -0.4881 S33: -0.3383 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 325 A 335 REMARK 3 ORIGIN FOR THE GROUP (A): -3.9396 -14.8651 -3.0859 REMARK 3 T TENSOR REMARK 3 T11: 0.1135 T22: 0.2280 REMARK 3 T33: 0.4068 T12: 0.1059 REMARK 3 T13: -0.0119 T23: 0.0633 REMARK 3 L TENSOR REMARK 3 L11: 4.8606 L22: 11.0444 REMARK 3 L33: 5.9738 L12: 2.4602 REMARK 3 L13: 0.4171 L23: -4.8662 REMARK 3 S TENSOR REMARK 3 S11: -0.0045 S12: -0.0680 S13: -0.1000 REMARK 3 S21: -0.5212 S22: 0.1456 S23: 0.9144 REMARK 3 S31: -0.0493 S32: -0.6844 S33: -0.1411 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 336 A 460 REMARK 3 ORIGIN FOR THE GROUP (A): 17.9251 -27.6104 0.3057 REMARK 3 T TENSOR REMARK 3 T11: 0.0353 T22: 0.0450 REMARK 3 T33: 0.1013 T12: -0.0007 REMARK 3 T13: 0.0091 T23: 0.0472 REMARK 3 L TENSOR REMARK 3 L11: 1.8294 L22: 1.2953 REMARK 3 L33: 0.9539 L12: 0.4609 REMARK 3 L13: -0.3320 L23: -0.4895 REMARK 3 S TENSOR REMARK 3 S11: -0.0313 S12: 0.2333 S13: 0.0996 REMARK 3 S21: -0.1075 S22: 0.1201 S23: 0.1812 REMARK 3 S31: 0.0385 S32: -0.1152 S33: -0.0888 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 501 A 501 REMARK 3 ORIGIN FOR THE GROUP (A): 18.1249 -15.2621 0.9124 REMARK 3 T TENSOR REMARK 3 T11: 0.1020 T22: 0.0774 REMARK 3 T33: 0.2855 T12: -0.0026 REMARK 3 T13: 0.0167 T23: 0.1393 REMARK 3 L TENSOR REMARK 3 L11: 4.8306 L22: 4.0413 REMARK 3 L33: 5.8202 L12: -3.7932 REMARK 3 L13: -0.7940 L23: 3.0706 REMARK 3 S TENSOR REMARK 3 S11: -0.0768 S12: 0.0448 S13: 0.0180 REMARK 3 S21: -0.0571 S22: 0.0046 S23: 0.0711 REMARK 3 S31: -0.2441 S32: 0.0293 S33: 0.0722 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 503 A 503 REMARK 3 ORIGIN FOR THE GROUP (A): 27.3397 -12.6767 -9.4709 REMARK 3 T TENSOR REMARK 3 T11: 0.0664 T22: 0.0231 REMARK 3 T33: 0.0435 T12: -0.0306 REMARK 3 T13: -0.0292 T23: 0.0286 REMARK 3 L TENSOR REMARK 3 L11: 5.0603 L22: 10.7064 REMARK 3 L33: 3.7729 L12: 1.5977 REMARK 3 L13: -3.6888 L23: -4.4782 REMARK 3 S TENSOR REMARK 3 S11: 0.0813 S12: 0.0456 S13: 0.2363 REMARK 3 S21: -0.4614 S22: 0.1345 S23: 0.2343 REMARK 3 S31: 0.0810 S32: -0.0627 S33: -0.2158 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 504 A 504 REMARK 3 ORIGIN FOR THE GROUP (A): 38.5148 -33.5349 8.0428 REMARK 3 T TENSOR REMARK 3 T11: 0.1786 T22: 0.0963 REMARK 3 T33: 0.0764 T12: 0.0452 REMARK 3 T13: 0.0017 T23: 0.0091 REMARK 3 L TENSOR REMARK 3 L11: 15.0020 L22: 10.4157 REMARK 3 L33: 0.0824 L12: 10.5160 REMARK 3 L13: 0.5413 L23: -0.0504 REMARK 3 S TENSOR REMARK 3 S11: 0.2273 S12: -0.1463 S13: 0.0118 REMARK 3 S21: 0.0694 S22: -0.1984 S23: 0.2494 REMARK 3 S31: 0.0388 S32: 0.0162 S33: -0.0289 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.10 REMARK 3 ION PROBE RADIUS : 0.90 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6INI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-NOV-18. REMARK 100 THE DEPOSITION ID IS D_1300009516. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JAN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : DIALS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54657 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 42.880 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 19.10 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.13900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2PQ6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM CITRATE BUFFER AT PH 5.4 REMARK 280 AND 20% PEG 4000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 29.87533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 59.75067 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 59.75067 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 29.87533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 872 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 ASN A 3 REMARK 465 LYS A 4 REMARK 465 THR A 5 REMARK 465 GLU A 6 REMARK 465 THR A 7 REMARK 465 THR A 8 REMARK 465 VAL A 9 REMARK 465 ARG A 10 REMARK 465 HIS A 461 REMARK 465 HIS A 462 REMARK 465 HIS A 463 REMARK 465 HIS A 464 REMARK 465 HIS A 465 REMARK 465 HIS A 466 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 67 -30.49 76.67 REMARK 500 LYS A 172 30.84 -88.84 REMARK 500 PHE A 182 61.38 -157.56 REMARK 500 TRP A 320 -100.99 -144.45 REMARK 500 LEU A 329 -24.27 92.39 REMARK 500 TRP A 338 139.37 -172.24 REMARK 500 LEU A 379 -136.34 52.56 REMARK 500 VAL A 391 -63.38 -92.37 REMARK 500 VAL A 416 -50.20 -123.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 AQ9 A 504 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue UDP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AUO A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AQ9 A 504 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6INF RELATED DB: PDB REMARK 900 SAME PROTEIN COMPLEXED WITH PRODUCT DBREF 6INI A 1 458 UNP Q6VAB4 U76G1_STERE 1 458 SEQADV 6INI LEU A 459 UNP Q6VAB4 EXPRESSION TAG SEQADV 6INI GLU A 460 UNP Q6VAB4 EXPRESSION TAG SEQADV 6INI HIS A 461 UNP Q6VAB4 EXPRESSION TAG SEQADV 6INI HIS A 462 UNP Q6VAB4 EXPRESSION TAG SEQADV 6INI HIS A 463 UNP Q6VAB4 EXPRESSION TAG SEQADV 6INI HIS A 464 UNP Q6VAB4 EXPRESSION TAG SEQADV 6INI HIS A 465 UNP Q6VAB4 EXPRESSION TAG SEQADV 6INI HIS A 466 UNP Q6VAB4 EXPRESSION TAG SEQRES 1 A 466 MET GLU ASN LYS THR GLU THR THR VAL ARG ARG ARG ARG SEQRES 2 A 466 ARG ILE ILE LEU PHE PRO VAL PRO PHE GLN GLY HIS ILE SEQRES 3 A 466 ASN PRO ILE LEU GLN LEU ALA ASN VAL LEU TYR SER LYS SEQRES 4 A 466 GLY PHE SER ILE THR ILE PHE HIS THR ASN PHE ASN LYS SEQRES 5 A 466 PRO LYS THR SER ASN TYR PRO HIS PHE THR PHE ARG PHE SEQRES 6 A 466 ILE LEU ASP ASN ASP PRO GLN ASP GLU ARG ILE SER ASN SEQRES 7 A 466 LEU PRO THR HIS GLY PRO LEU ALA GLY MET ARG ILE PRO SEQRES 8 A 466 ILE ILE ASN GLU HIS GLY ALA ASP GLU LEU ARG ARG GLU SEQRES 9 A 466 LEU GLU LEU LEU MET LEU ALA SER GLU GLU ASP GLU GLU SEQRES 10 A 466 VAL SER CYS LEU ILE THR ASP ALA LEU TRP TYR PHE ALA SEQRES 11 A 466 GLN SER VAL ALA ASP SER LEU ASN LEU ARG ARG LEU VAL SEQRES 12 A 466 LEU MET THR SER SER LEU PHE ASN PHE HIS ALA HIS VAL SEQRES 13 A 466 SER LEU PRO GLN PHE ASP GLU LEU GLY TYR LEU ASP PRO SEQRES 14 A 466 ASP ASP LYS THR ARG LEU GLU GLU GLN ALA SER GLY PHE SEQRES 15 A 466 PRO MET LEU LYS VAL LYS ASP ILE LYS SER ALA TYR SER SEQRES 16 A 466 ASN TRP GLN ILE LEU LYS GLU ILE LEU GLY LYS MET ILE SEQRES 17 A 466 LYS GLN THR LYS ALA SER SER GLY VAL ILE TRP ASN SER SEQRES 18 A 466 PHE LYS GLU LEU GLU GLU SER GLU LEU GLU THR VAL ILE SEQRES 19 A 466 ARG GLU ILE PRO ALA PRO SER PHE LEU ILE PRO LEU PRO SEQRES 20 A 466 LYS HIS LEU THR ALA SER SER SER SER LEU LEU ASP HIS SEQRES 21 A 466 ASP ARG THR VAL PHE GLN TRP LEU ASP GLN GLN PRO PRO SEQRES 22 A 466 SER SER VAL LEU TYR VAL SER PHE GLY SER THR SER GLU SEQRES 23 A 466 VAL ASP GLU LYS ASP PHE LEU GLU ILE ALA ARG GLY LEU SEQRES 24 A 466 VAL ASP SER LYS GLN SER PHE LEU TRP VAL VAL ARG PRO SEQRES 25 A 466 GLY PHE VAL LYS GLY SER THR TRP VAL GLU PRO LEU PRO SEQRES 26 A 466 ASP GLY PHE LEU GLY GLU ARG GLY ARG ILE VAL LYS TRP SEQRES 27 A 466 VAL PRO GLN GLN GLU VAL LEU ALA HIS GLY ALA ILE GLY SEQRES 28 A 466 ALA PHE TRP THR HIS SER GLY TRP ASN SER THR LEU GLU SEQRES 29 A 466 SER VAL CYS GLU GLY VAL PRO MET ILE PHE SER ASP PHE SEQRES 30 A 466 GLY LEU ASP GLN PRO LEU ASN ALA ARG TYR MET SER ASP SEQRES 31 A 466 VAL LEU LYS VAL GLY VAL TYR LEU GLU ASN GLY TRP GLU SEQRES 32 A 466 ARG GLY GLU ILE ALA ASN ALA ILE ARG ARG VAL MET VAL SEQRES 33 A 466 ASP GLU GLU GLY GLU TYR ILE ARG GLN ASN ALA ARG VAL SEQRES 34 A 466 LEU LYS GLN LYS ALA ASP VAL SER LEU MET LYS GLY GLY SEQRES 35 A 466 SER SER TYR GLU SER LEU GLU SER LEU VAL SER TYR ILE SEQRES 36 A 466 SER SER LEU LEU GLU HIS HIS HIS HIS HIS HIS HET UDP A 501 25 HET GOL A 502 6 HET AUO A 503 56 HET AQ9 A 504 34 HETNAM UDP URIDINE-5'-DIPHOSPHATE HETNAM GOL GLYCEROL HETNAM AUO (8ALPHA,9BETA,10ALPHA,13ALPHA)-13-{[BETA-D- HETNAM 2 AUO GLUCOPYRANOSYL-(1->2)-[BETA-D-GLUCOPYRANOSYL-(1->3)]- HETNAM 3 AUO BETA-D-GLUCOPYRANOSYL]OXY}KAUR-16-EN-18-OIC ACID HETNAM AQ9 1-O-[(8ALPHA,9BETA,10ALPHA,13ALPHA)-13-(BETA-D- HETNAM 2 AQ9 GLUCOPYRANOSYLOXY)-18-OXOKAUR-16-EN-18-YL]-BETA-D- HETNAM 3 AQ9 GLUCOPYRANOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN AQ9 RUBUSOSIDE FORMUL 2 UDP C9 H14 N2 O12 P2 FORMUL 3 GOL C3 H8 O3 FORMUL 4 AUO C38 H60 O18 FORMUL 5 AQ9 C32 H50 O13 FORMUL 6 HOH *273(H2 O) HELIX 1 AA1 PHE A 22 LYS A 39 1 18 HELIX 2 AA2 LYS A 54 TYR A 58 5 5 HELIX 3 AA3 GLY A 83 GLY A 87 5 5 HELIX 4 AA4 MET A 88 GLY A 97 1 10 HELIX 5 AA5 GLY A 97 SER A 112 1 16 HELIX 6 AA6 PHE A 129 LEU A 137 1 9 HELIX 7 AA7 SER A 148 SER A 157 1 10 HELIX 8 AA8 SER A 157 LEU A 164 1 8 HELIX 9 AA9 VAL A 187 TYR A 194 1 8 HELIX 10 AB1 ASN A 196 ALA A 213 1 18 HELIX 11 AB2 GLU A 226 SER A 228 5 3 HELIX 12 AB3 GLU A 229 ILE A 237 1 9 HELIX 13 AB4 PRO A 245 HIS A 249 5 5 HELIX 14 AB5 ALA A 252 SER A 256 5 5 HELIX 15 AB6 THR A 263 ASP A 269 1 7 HELIX 16 AB7 ASP A 288 LYS A 303 1 16 HELIX 17 AB8 PRO A 340 ALA A 346 1 7 HELIX 18 AB9 GLY A 358 GLY A 369 1 12 HELIX 19 AC1 ASP A 380 VAL A 391 1 12 HELIX 20 AC2 GLU A 403 VAL A 416 1 14 HELIX 21 AC3 ASP A 417 GLU A 419 5 3 HELIX 22 AC4 GLY A 420 LEU A 438 1 19 HELIX 23 AC5 GLY A 442 LEU A 458 1 17 SHEET 1 AA1 7 THR A 62 PHE A 65 0 SHEET 2 AA1 7 SER A 42 HIS A 47 1 N ILE A 45 O THR A 62 SHEET 3 AA1 7 ARG A 13 PHE A 18 1 N LEU A 17 O THR A 44 SHEET 4 AA1 7 GLU A 117 ASP A 124 1 O SER A 119 N ARG A 14 SHEET 5 AA1 7 ARG A 141 MET A 145 1 O LEU A 142 N LEU A 121 SHEET 6 AA1 7 VAL A 217 TRP A 219 1 O ILE A 218 N VAL A 143 SHEET 7 AA1 7 SER A 241 LEU A 243 1 O PHE A 242 N TRP A 219 SHEET 1 AA2 2 GLN A 178 ALA A 179 0 SHEET 2 AA2 2 PHE A 182 LYS A 186 -1 O LEU A 185 N ALA A 179 SHEET 1 AA3 6 GLY A 333 VAL A 336 0 SHEET 2 AA3 6 SER A 305 VAL A 309 1 N TRP A 308 O ARG A 334 SHEET 3 AA3 6 VAL A 276 SER A 280 1 N VAL A 279 O VAL A 309 SHEET 4 AA3 6 ILE A 350 THR A 355 1 O TRP A 354 N TYR A 278 SHEET 5 AA3 6 MET A 372 PHE A 374 1 O ILE A 373 N THR A 355 SHEET 6 AA3 6 GLY A 395 TYR A 397 1 O VAL A 396 N PHE A 374 CISPEP 1 ASP A 70 PRO A 71 0 -3.81 SITE 1 AC1 20 GLN A 23 GLY A 24 ASN A 27 GLY A 282 SITE 2 AC1 20 SER A 283 VAL A 309 TRP A 338 VAL A 339 SITE 3 AC1 20 GLN A 341 HIS A 356 GLY A 358 TRP A 359 SITE 4 AC1 20 ASN A 360 SER A 361 GLU A 364 AUO A 503 SITE 5 AC1 20 HOH A 637 HOH A 704 HOH A 706 HOH A 817 SITE 1 AC2 8 ASN A 34 TYR A 58 SER A 254 GLN A 271 SITE 2 AC2 8 GLY A 348 HOH A 626 HOH A 705 HOH A 805 SITE 1 AC3 26 GLY A 24 HIS A 25 ASN A 78 PRO A 84 SITE 2 AC3 26 LEU A 85 GLY A 87 ILE A 90 THR A 146 SITE 3 AC3 26 SER A 147 HIS A 155 ASN A 196 LEU A 200 SITE 4 AC3 26 ILE A 203 THR A 284 GLY A 358 TRP A 359 SITE 5 AC3 26 ASP A 380 GLN A 381 UDP A 501 HOH A 607 SITE 6 AC3 26 HOH A 637 HOH A 697 HOH A 709 HOH A 759 SITE 7 AC3 26 HOH A 769 HOH A 833 SITE 1 AC4 9 LYS A 223 SER A 241 PHE A 242 GLY A 441 SITE 2 AC4 9 SER A 443 GLU A 446 SER A 447 SER A 450 SITE 3 AC4 9 HOH A 644 CRYST1 97.662 97.662 89.626 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010239 0.005912 0.000000 0.00000 SCALE2 0.000000 0.011823 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011157 0.00000