HEADER GENE REGULATION 26-OCT-18 6INR TITLE THE CRYSTAL STRUCTURE OF PHYTOPLASMAL EFFECTOR CAUSING PHYLLODY TITLE 2 SYMPTOMS 1 (PHYL1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE EFFECTOR, AYWB SAP54-LIKE PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: 'ECHINACEA PURPUREA' WITCHES'-BROOM SOURCE 3 PHYTOPLASMA; SOURCE 4 ORGANISM_TAXID: 1123738; SOURCE 5 GENE: EPWB_V1C1980; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS PHYTOPLASMA, PHYTOPLASMAL EFFECTOR CAUSING PHYLLODY 1, GENE KEYWDS 2 REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR Y.T.LIAO,S.S.LIN,T.P.KO,H.C.WANG REVDAT 4 27-MAR-24 6INR 1 LINK REVDAT 3 27-NOV-19 6INR 1 JRNL REVDAT 2 25-SEP-19 6INR 1 JRNL REVDAT 1 31-JUL-19 6INR 0 JRNL AUTH Y.T.LIAO,S.S.LIN,S.J.LIN,W.T.SUN,B.N.SHEN,H.P.CHENG,C.P.LIN, JRNL AUTH 2 T.P.KO,Y.F.CHEN,H.C.WANG JRNL TITL STRUCTURAL INSIGHTS INTO THE INTERACTION BETWEEN JRNL TITL 2 PHYTOPLASMAL EFFECTOR CAUSING PHYLLODY 1 AND MADS JRNL TITL 3 TRANSCRIPTION FACTORS. JRNL REF PLANT J. V. 100 706 2019 JRNL REFN ESSN 1365-313X JRNL PMID 31323156 JRNL DOI 10.1111/TPJ.14463 REMARK 2 REMARK 2 RESOLUTION. 2.34 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.34 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 83.5 REMARK 3 NUMBER OF REFLECTIONS : 8698 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.257 REMARK 3 R VALUE (WORKING SET) : 0.256 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 456 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.34 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.40 REMARK 3 REFLECTION IN BIN (WORKING SET) : 262 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 35.45 REMARK 3 BIN R VALUE (WORKING SET) : 0.3510 REMARK 3 BIN FREE R VALUE SET COUNT : 17 REMARK 3 BIN FREE R VALUE : 0.4850 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1188 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 171 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.41000 REMARK 3 B22 (A**2) : 0.41000 REMARK 3 B33 (A**2) : -1.32000 REMARK 3 B12 (A**2) : 0.20000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.424 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.272 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.902 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.902 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1195 ; 0.011 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1216 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1603 ; 1.252 ; 1.986 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2809 ; 3.475 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 142 ; 4.206 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 63 ;44.281 ;28.413 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 265 ;16.856 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 1 ; 4.932 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 188 ; 0.070 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1344 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 243 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 574 ; 2.885 ; 4.536 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 573 ; 2.877 ; 4.533 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 714 ; 4.866 ; 6.781 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 715 ; 4.863 ; 6.783 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 619 ; 3.329 ; 4.871 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 620 ; 3.326 ; 4.871 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 890 ; 5.895 ; 7.104 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1448 ;10.042 ;34.641 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1435 ; 9.975 ;34.471 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 17 82 B 17 82 3698 0.24 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6INR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-NOV-18. REMARK 100 THE DEPOSITION ID IS D_1300009598. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL15A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10840 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.340 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 8.000 REMARK 200 R MERGE (I) : 0.03600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 44.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.34 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 7.80 REMARK 200 R MERGE FOR SHELL (I) : 1.01200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX CDE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05 M CADMIUM SULFATE HYDRATE, 0.1 M REMARK 280 HEPES PH 7.5 AND 1.0 M SODIUM ACETATE TRIHYDRATE, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 96.71600 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 96.71600 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 96.71600 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 96.71600 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 96.71600 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 96.71600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 282 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 285 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 646 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 677 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 679 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 682 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 686 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 PRO A 3 REMARK 465 LYS A 4 REMARK 465 LEU A 5 REMARK 465 PRO A 6 REMARK 465 GLU A 7 REMARK 465 THR A 8 REMARK 465 ASP A 84 REMARK 465 LEU A 85 REMARK 465 ASN A 86 REMARK 465 ASP A 87 REMARK 465 GLU A 88 REMARK 465 LYS A 89 REMARK 465 ASN A 90 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 ASP B 2 REMARK 465 PRO B 3 REMARK 465 LYS B 4 REMARK 465 LEU B 5 REMARK 465 PRO B 6 REMARK 465 GLU B 7 REMARK 465 THR B 8 REMARK 465 SER B 9 REMARK 465 SER B 10 REMARK 465 ARG B 11 REMARK 465 GLN B 12 REMARK 465 PRO B 13 REMARK 465 VAL B 14 REMARK 465 TYR B 15 REMARK 465 HIS B 16 REMARK 465 ASN B 86 REMARK 465 ASP B 87 REMARK 465 GLU B 88 REMARK 465 LYS B 89 REMARK 465 ASN B 90 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CD CD A 101 O HOH A 213 1.44 REMARK 500 NH1 ARG A 11 O HOH A 201 1.72 REMARK 500 OD2 ASP A 52 O HOH A 202 2.05 REMARK 500 O HOH B 606 O HOH B 617 2.09 REMARK 500 ND2 ASN A 70 O HOH A 203 2.12 REMARK 500 OE1 GLU A 73 O HOH A 204 2.13 REMARK 500 CZ ARG A 11 O HOH A 201 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NE2 GLN A 74 NE2 GLN A 74 11555 1.64 REMARK 500 CD1 ILE A 25 CD1 ILE A 25 12565 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 10 -54.53 -138.49 REMARK 500 THR A 50 -133.68 -67.61 REMARK 500 LEU A 82 132.73 -39.10 REMARK 500 THR B 50 -137.45 -67.38 REMARK 500 LEU B 81 -37.60 -36.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 274 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH A 275 DISTANCE = 6.58 ANGSTROMS REMARK 525 HOH A 276 DISTANCE = 6.65 ANGSTROMS REMARK 525 HOH A 277 DISTANCE = 6.83 ANGSTROMS REMARK 525 HOH A 278 DISTANCE = 7.15 ANGSTROMS REMARK 525 HOH A 279 DISTANCE = 7.34 ANGSTROMS REMARK 525 HOH A 280 DISTANCE = 7.49 ANGSTROMS REMARK 525 HOH A 281 DISTANCE = 7.79 ANGSTROMS REMARK 525 HOH A 282 DISTANCE = 7.83 ANGSTROMS REMARK 525 HOH A 283 DISTANCE = 7.84 ANGSTROMS REMARK 525 HOH A 284 DISTANCE = 8.84 ANGSTROMS REMARK 525 HOH A 285 DISTANCE = 9.05 ANGSTROMS REMARK 525 HOH B 678 DISTANCE = 6.03 ANGSTROMS REMARK 525 HOH B 679 DISTANCE = 6.54 ANGSTROMS REMARK 525 HOH B 680 DISTANCE = 6.96 ANGSTROMS REMARK 525 HOH B 681 DISTANCE = 7.98 ANGSTROMS REMARK 525 HOH B 682 DISTANCE = 8.32 ANGSTROMS REMARK 525 HOH B 683 DISTANCE = 8.40 ANGSTROMS REMARK 525 HOH B 684 DISTANCE = 8.44 ANGSTROMS REMARK 525 HOH B 685 DISTANCE = 9.12 ANGSTROMS REMARK 525 HOH B 686 DISTANCE = 9.88 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD B 501 DBREF1 6INR A 1 90 UNP A0A0P7KHL3_9MOLU DBREF2 6INR A A0A0P7KHL3 33 122 DBREF1 6INR B 1 90 UNP A0A0P7KHL3_9MOLU DBREF2 6INR B A0A0P7KHL3 33 122 SEQADV 6INR GLY A -2 UNP A0A0P7KHL EXPRESSION TAG SEQADV 6INR SER A -1 UNP A0A0P7KHL EXPRESSION TAG SEQADV 6INR HIS A 0 UNP A0A0P7KHL EXPRESSION TAG SEQADV 6INR GLY B -2 UNP A0A0P7KHL EXPRESSION TAG SEQADV 6INR SER B -1 UNP A0A0P7KHL EXPRESSION TAG SEQADV 6INR HIS B 0 UNP A0A0P7KHL EXPRESSION TAG SEQRES 1 A 93 GLY SER HIS MET ASP PRO LYS LEU PRO GLU THR SER SER SEQRES 2 A 93 ARG GLN PRO VAL TYR HIS ASN LEU THR ILE GLU GLU ASN SEQRES 3 A 93 ILE ILE ASN LEU LYS GLN LYS ILE TYR ASP ASN ALA THR SEQRES 4 A 93 LYS ILE THR ASN ILE ASP LYS GLY LEU GLN GLY SER ILE SEQRES 5 A 93 THR ASP ASP GLN LYS GLU ASN LEU LEU LYS LEU LYS GLU SEQRES 6 A 93 ASN TYR LYS GLN LEU ILE ASP ASN GLN LYS GLU GLN LEU SEQRES 7 A 93 LYS THR TYR LYS ASN LEU LEU ASN ASP LEU ASN ASP GLU SEQRES 8 A 93 LYS ASN SEQRES 1 B 93 GLY SER HIS MET ASP PRO LYS LEU PRO GLU THR SER SER SEQRES 2 B 93 ARG GLN PRO VAL TYR HIS ASN LEU THR ILE GLU GLU ASN SEQRES 3 B 93 ILE ILE ASN LEU LYS GLN LYS ILE TYR ASP ASN ALA THR SEQRES 4 B 93 LYS ILE THR ASN ILE ASP LYS GLY LEU GLN GLY SER ILE SEQRES 5 B 93 THR ASP ASP GLN LYS GLU ASN LEU LEU LYS LEU LYS GLU SEQRES 6 B 93 ASN TYR LYS GLN LEU ILE ASP ASN GLN LYS GLU GLN LEU SEQRES 7 B 93 LYS THR TYR LYS ASN LEU LEU ASN ASP LEU ASN ASP GLU SEQRES 8 B 93 LYS ASN HET CD A 101 1 HET CD A 102 1 HET CD B 501 1 HETNAM CD CADMIUM ION FORMUL 3 CD 3(CD 2+) FORMUL 6 HOH *171(H2 O) HELIX 1 AA1 GLN A 12 GLY A 47 1 36 HELIX 2 AA2 ASP A 51 LEU A 82 1 32 HELIX 3 AA3 THR B 19 GLY B 47 1 29 HELIX 4 AA4 ASP B 51 ASP B 84 1 34 LINK ND1 HIS A 16 CD CD A 102 1555 1555 2.56 LINK CD CD A 101 OD1 ASP B 69 2555 1555 2.46 SITE 1 AC1 3 ASP A 51 HOH A 213 ASP B 69 SITE 1 AC2 3 HIS A 16 LYS A 37 HOH A 235 SITE 1 AC3 1 GLU B 22 CRYST1 65.006 65.006 193.432 90.00 90.00 120.00 P 63 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015383 0.008881 0.000000 0.00000 SCALE2 0.000000 0.017763 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005170 0.00000