HEADER SIGNALING PROTEIN 31-OCT-18 6IOP TITLE THE LIGAND BINDING DOMAIN OF MLP24 COMPND MOL_ID: 1; COMPND 2 MOLECULE: METHYL-ACCEPTING CHEMOTAXIS PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE; SOURCE 3 ORGANISM_TAXID: 666; SOURCE 4 GENE: MCPB_4, ERS013206_02812; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX 6P-2 KEYWDS CHEMORECEPTOR, LIGAND COMPLEX, MCP-LIKE PROTEIN, PAS-LIKE DOMAIN, KEYWDS 2 SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.SUMITA,Y.TAKAHASHI,S.NISHIYAMA,I.KAWAGISHI,K.IMADA REVDAT 3 22-NOV-23 6IOP 1 LINK REVDAT 2 24-APR-19 6IOP 1 JRNL REVDAT 1 20-MAR-19 6IOP 0 JRNL AUTH Y.TAKAHASHI,S.I.NISHIYAMA,K.SUMITA,I.KAWAGISHI,K.IMADA JRNL TITL CALCIUM IONS MODULATE AMINO ACID SENSING OF THE JRNL TITL 2 CHEMORECEPTOR MLP24 OFVIBRIO CHOLERAE. JRNL REF J. BACTERIOL. V. 201 2019 JRNL REFN ESSN 1098-5530 JRNL PMID 30745373 JRNL DOI 10.1128/JB.00779-18 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.05 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 25130 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.890 REMARK 3 FREE R VALUE TEST SET COUNT : 1228 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.0567 - 4.7810 0.99 2687 139 0.2061 0.2536 REMARK 3 2 4.7810 - 3.7961 1.00 2629 156 0.1752 0.1995 REMARK 3 3 3.7961 - 3.3167 1.00 2672 140 0.2031 0.2806 REMARK 3 4 3.3167 - 3.0136 1.00 2635 151 0.2162 0.2698 REMARK 3 5 3.0136 - 2.7977 1.00 2649 136 0.2289 0.3045 REMARK 3 6 2.7977 - 2.6328 1.00 2659 123 0.2232 0.2826 REMARK 3 7 2.6328 - 2.5010 1.00 2658 126 0.2293 0.3123 REMARK 3 8 2.5010 - 2.3921 1.00 2644 126 0.2370 0.3168 REMARK 3 9 2.3921 - 2.3000 1.00 2669 131 0.2522 0.3530 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.190 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3818 REMARK 3 ANGLE : 1.213 5180 REMARK 3 CHIRALITY : 0.055 588 REMARK 3 PLANARITY : 0.005 672 REMARK 3 DIHEDRAL : 20.776 1404 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6IOP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-NOV-18. REMARK 100 THE DEPOSITION ID IS D_1300009636. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25138 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 49.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.10700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.35900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3C8C REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES PH 6.0, 42.5% (V/V) PEG 400, REMARK 280 0.1M CALCIUM ACETATE AND 3% (V/V) DMSO, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 52.05000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.19500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 52.05000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 44.19500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 457 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 603 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 635 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 25 REMARK 465 PRO A 26 REMARK 465 LEU A 27 REMARK 465 ASP A 267 REMARK 465 LEU A 268 REMARK 465 ARG A 269 REMARK 465 HIS A 270 REMARK 465 SER A 271 REMARK 465 SER A 272 REMARK 465 LEU A 273 REMARK 465 ILE A 274 REMARK 465 HIS A 275 REMARK 465 HIS A 276 REMARK 465 HIS A 277 REMARK 465 HIS A 278 REMARK 465 HIS A 279 REMARK 465 HIS A 280 REMARK 465 GLY B 25 REMARK 465 PRO B 26 REMARK 465 LEU B 27 REMARK 465 ASP B 266 REMARK 465 ASP B 267 REMARK 465 LEU B 268 REMARK 465 ARG B 269 REMARK 465 HIS B 270 REMARK 465 SER B 271 REMARK 465 SER B 272 REMARK 465 LEU B 273 REMARK 465 ILE B 274 REMARK 465 HIS B 275 REMARK 465 HIS B 276 REMARK 465 HIS B 277 REMARK 465 HIS B 278 REMARK 465 HIS B 279 REMARK 465 HIS B 280 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 621 O HOH B 624 2.09 REMARK 500 OD2 ASP A 223 O HOH A 401 2.17 REMARK 500 OE2 GLU A 115 O HOH A 402 2.19 REMARK 500 O PRO A 75 OH TYR A 101 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 447 O HOH B 633 2857 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 75 C - N - CA ANGL. DEV. = 9.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 74 81.85 -158.66 REMARK 500 SER A 147 0.95 -69.44 REMARK 500 THR A 148 -149.42 -161.49 REMARK 500 PHE A 188 -122.47 56.23 REMARK 500 THR B 52 -77.24 -104.66 REMARK 500 ASP B 74 63.38 -156.08 REMARK 500 ASN B 77 96.91 -69.33 REMARK 500 ASP B 104 -177.90 -173.86 REMARK 500 ALA B 105 37.75 -98.74 REMARK 500 TYR B 120 116.12 -161.13 REMARK 500 SER B 147 -71.95 -77.11 REMARK 500 SER B 163 -4.36 68.23 REMARK 500 LEU B 175 35.05 -97.07 REMARK 500 LEU B 187 85.32 -65.63 REMARK 500 PHE B 188 55.71 30.69 REMARK 500 ASP B 189 19.08 55.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 109 OE1 REMARK 620 2 GLU A 109 OE2 49.6 REMARK 620 3 ASP A 111 O 126.0 76.6 REMARK 620 4 TRP A 114 O 83.3 79.8 83.6 REMARK 620 5 GLU A 115 OE2 95.3 144.9 138.2 96.7 REMARK 620 6 HOH A 402 O 146.1 163.9 87.9 103.0 51.1 REMARK 620 7 HOH A 415 O 86.4 84.4 92.8 164.2 96.2 92.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 502 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 109 OE1 REMARK 620 2 GLU B 109 OE2 45.4 REMARK 620 3 ASP B 111 O 95.3 139.8 REMARK 620 4 TRP B 114 O 67.9 92.3 75.7 REMARK 620 5 GLU B 115 OE2 111.4 74.4 141.9 89.2 REMARK 620 6 HOH B 604 O 140.9 144.5 69.1 73.5 73.1 REMARK 620 7 HOH B 625 O 115.8 101.1 88.1 163.8 103.0 99.8 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ALA B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6IOQ RELATED DB: PDB REMARK 900 6IOQ CONTAINS THE SAME PROTEIN COMPLEXED WITH GLYCINE. REMARK 900 RELATED ID: 6IOR RELATED DB: PDB REMARK 900 6IOR CONTAINS THE SAME PROTEIN COMPLEXED WITH ASPARAGINE. REMARK 900 RELATED ID: 6IOS RELATED DB: PDB REMARK 900 6IOS CONTAINS THE SAME PROTEIN COMPLEXED WITH PROLINE. REMARK 900 RELATED ID: 6IOT RELATED DB: PDB REMARK 900 6IOT CONTAINS THE SAME PROTEIN COMPLEXED WITH ARGININE. REMARK 900 RELATED ID: 6IOU RELATED DB: PDB REMARK 900 6IOU CONTAINS THE SAME PROTEIN COMPLEXED WITH SERINE. DBREF1 6IOP A 30 274 UNP A0A0H6VSA0_VIBCL DBREF2 6IOP A A0A0H6VSA0 76 320 DBREF1 6IOP B 30 274 UNP A0A0H6VSA0_VIBCL DBREF2 6IOP B A0A0H6VSA0 76 320 SEQADV 6IOP GLY A 25 UNP A0A0H6VSA EXPRESSION TAG SEQADV 6IOP PRO A 26 UNP A0A0H6VSA EXPRESSION TAG SEQADV 6IOP LEU A 27 UNP A0A0H6VSA EXPRESSION TAG SEQADV 6IOP GLY A 28 UNP A0A0H6VSA EXPRESSION TAG SEQADV 6IOP SER A 29 UNP A0A0H6VSA EXPRESSION TAG SEQADV 6IOP HIS A 275 UNP A0A0H6VSA EXPRESSION TAG SEQADV 6IOP HIS A 276 UNP A0A0H6VSA EXPRESSION TAG SEQADV 6IOP HIS A 277 UNP A0A0H6VSA EXPRESSION TAG SEQADV 6IOP HIS A 278 UNP A0A0H6VSA EXPRESSION TAG SEQADV 6IOP HIS A 279 UNP A0A0H6VSA EXPRESSION TAG SEQADV 6IOP HIS A 280 UNP A0A0H6VSA EXPRESSION TAG SEQADV 6IOP GLY B 25 UNP A0A0H6VSA EXPRESSION TAG SEQADV 6IOP PRO B 26 UNP A0A0H6VSA EXPRESSION TAG SEQADV 6IOP LEU B 27 UNP A0A0H6VSA EXPRESSION TAG SEQADV 6IOP GLY B 28 UNP A0A0H6VSA EXPRESSION TAG SEQADV 6IOP SER B 29 UNP A0A0H6VSA EXPRESSION TAG SEQADV 6IOP HIS B 275 UNP A0A0H6VSA EXPRESSION TAG SEQADV 6IOP HIS B 276 UNP A0A0H6VSA EXPRESSION TAG SEQADV 6IOP HIS B 277 UNP A0A0H6VSA EXPRESSION TAG SEQADV 6IOP HIS B 278 UNP A0A0H6VSA EXPRESSION TAG SEQADV 6IOP HIS B 279 UNP A0A0H6VSA EXPRESSION TAG SEQADV 6IOP HIS B 280 UNP A0A0H6VSA EXPRESSION TAG SEQRES 1 A 256 GLY PRO LEU GLY SER VAL ARG GLU GLU ILE GLU SER LEU SEQRES 2 A 256 VAL GLN ASP SER LEU MET GLU MET VAL LYS GLY VAL LYS SEQRES 3 A 256 ASN THR ILE GLU SER ASP LEU ALA SER LYS LYS GLY LEU SEQRES 4 A 256 ALA GLN SER THR THR GLU ILE LEU GLN LEU ASP PRO THR SEQRES 5 A 256 ASN LYS ALA PHE ALA LYS SER VAL LEU GLU SER PRO ASN SEQRES 6 A 256 LEU LYS GLY SER PHE LEU ALA ILE GLY LEU GLY TYR GLU SEQRES 7 A 256 SER ASP ALA THR VAL VAL GLU ASN ASP ASP GLY TRP GLU SEQRES 8 A 256 PRO ASN ALA ASP TYR ASP PRO ARG LYS ARG PRO TRP TYR SEQRES 9 A 256 VAL ASP ALA LYS ARG GLU ARG LYS LEU VAL VAL THR GLU SEQRES 10 A 256 PRO TYR VAL ASP ILE SER THR LYS LYS ILE ILE ILE SER SEQRES 11 A 256 ILE GLY THR PRO VAL TYR GLN GLN SER ASN PHE VAL GLY SEQRES 12 A 256 ALA MET PHE TYR ASP VAL GLU LEU THR GLN LEU ALA GLN SEQRES 13 A 256 LEU VAL ASN SER VAL ASN LEU PHE ASP ALA GLY TYR LEU SEQRES 14 A 256 PHE ILE THR THR LYS ASP GLY VAL THR ILE ALA HIS PRO SEQRES 15 A 256 ASN ALA GLU ASN ASN GLY GLU LYS PHE SER GLN PHE LEU SEQRES 16 A 256 PRO ASN VAL ASP LEU LYS GLU GLY THR GLN ARG ILE GLU SEQRES 17 A 256 LEU ASP GLY LYS TYR TYR LEU VAL LYS PHE ALA GLN VAL SEQRES 18 A 256 PRO SER GLU SER TRP TYR ILE GLY ALA VAL VAL ASP GLU SEQRES 19 A 256 SER ILE ALA PHE ALA MET VAL ASP ASP LEU ARG HIS SER SEQRES 20 A 256 SER LEU ILE HIS HIS HIS HIS HIS HIS SEQRES 1 B 256 GLY PRO LEU GLY SER VAL ARG GLU GLU ILE GLU SER LEU SEQRES 2 B 256 VAL GLN ASP SER LEU MET GLU MET VAL LYS GLY VAL LYS SEQRES 3 B 256 ASN THR ILE GLU SER ASP LEU ALA SER LYS LYS GLY LEU SEQRES 4 B 256 ALA GLN SER THR THR GLU ILE LEU GLN LEU ASP PRO THR SEQRES 5 B 256 ASN LYS ALA PHE ALA LYS SER VAL LEU GLU SER PRO ASN SEQRES 6 B 256 LEU LYS GLY SER PHE LEU ALA ILE GLY LEU GLY TYR GLU SEQRES 7 B 256 SER ASP ALA THR VAL VAL GLU ASN ASP ASP GLY TRP GLU SEQRES 8 B 256 PRO ASN ALA ASP TYR ASP PRO ARG LYS ARG PRO TRP TYR SEQRES 9 B 256 VAL ASP ALA LYS ARG GLU ARG LYS LEU VAL VAL THR GLU SEQRES 10 B 256 PRO TYR VAL ASP ILE SER THR LYS LYS ILE ILE ILE SER SEQRES 11 B 256 ILE GLY THR PRO VAL TYR GLN GLN SER ASN PHE VAL GLY SEQRES 12 B 256 ALA MET PHE TYR ASP VAL GLU LEU THR GLN LEU ALA GLN SEQRES 13 B 256 LEU VAL ASN SER VAL ASN LEU PHE ASP ALA GLY TYR LEU SEQRES 14 B 256 PHE ILE THR THR LYS ASP GLY VAL THR ILE ALA HIS PRO SEQRES 15 B 256 ASN ALA GLU ASN ASN GLY GLU LYS PHE SER GLN PHE LEU SEQRES 16 B 256 PRO ASN VAL ASP LEU LYS GLU GLY THR GLN ARG ILE GLU SEQRES 17 B 256 LEU ASP GLY LYS TYR TYR LEU VAL LYS PHE ALA GLN VAL SEQRES 18 B 256 PRO SER GLU SER TRP TYR ILE GLY ALA VAL VAL ASP GLU SEQRES 19 B 256 SER ILE ALA PHE ALA MET VAL ASP ASP LEU ARG HIS SER SEQRES 20 B 256 SER LEU ILE HIS HIS HIS HIS HIS HIS HET CA A 301 1 HET ACT A 302 4 HET ALA B 501 6 HET CA B 502 1 HETNAM CA CALCIUM ION HETNAM ACT ACETATE ION HETNAM ALA ALANINE FORMUL 3 CA 2(CA 2+) FORMUL 4 ACT C2 H3 O2 1- FORMUL 5 ALA C3 H7 N O2 FORMUL 7 HOH *99(H2 O) HELIX 1 AA1 GLY A 28 GLN A 72 1 45 HELIX 2 AA2 ASN A 77 GLU A 86 1 10 HELIX 3 AA3 SER A 87 PHE A 94 1 8 HELIX 4 AA4 ASP A 121 LYS A 124 5 4 HELIX 5 AA5 ARG A 125 ARG A 135 1 11 HELIX 6 AA6 THR A 176 SER A 184 1 9 HELIX 7 AA7 ASN A 207 ASN A 211 5 5 HELIX 8 AA8 LYS A 214 PHE A 218 5 5 HELIX 9 AA9 GLU A 258 ASP A 266 1 9 HELIX 10 AB1 SER B 29 THR B 52 1 24 HELIX 11 AB2 THR B 52 GLN B 72 1 21 HELIX 12 AB3 ASN B 77 SER B 87 1 11 HELIX 13 AB4 SER B 87 PHE B 94 1 8 HELIX 14 AB5 ASP B 121 LYS B 124 5 4 HELIX 15 AB6 ARG B 125 ARG B 135 1 11 HELIX 16 AB7 LEU B 175 ASN B 183 1 9 HELIX 17 AB8 ASN B 207 ASN B 211 5 5 HELIX 18 AB9 LYS B 214 PHE B 218 5 5 HELIX 19 AC1 GLU B 258 VAL B 265 1 8 SHEET 1 AA1 5 VAL A 107 GLU A 109 0 SHEET 2 AA1 5 ALA A 96 TYR A 101 -1 N LEU A 99 O VAL A 108 SHEET 3 AA1 5 ASN A 164 GLU A 174 -1 O ALA A 168 N GLY A 100 SHEET 4 AA1 5 ILE A 151 GLN A 161 -1 N ILE A 153 O VAL A 173 SHEET 5 AA1 5 VAL A 138 VAL A 139 -1 N VAL A 138 O GLY A 156 SHEET 1 AA2 5 VAL A 107 GLU A 109 0 SHEET 2 AA2 5 ALA A 96 TYR A 101 -1 N LEU A 99 O VAL A 108 SHEET 3 AA2 5 ASN A 164 GLU A 174 -1 O ALA A 168 N GLY A 100 SHEET 4 AA2 5 ILE A 151 GLN A 161 -1 N ILE A 153 O VAL A 173 SHEET 5 AA2 5 TYR A 143 VAL A 144 -1 N TYR A 143 O ILE A 152 SHEET 1 AA3 5 THR A 202 ALA A 204 0 SHEET 2 AA3 5 GLY A 191 THR A 196 -1 N ILE A 195 O ILE A 203 SHEET 3 AA3 5 TYR A 251 ASP A 257 -1 O GLY A 253 N PHE A 194 SHEET 4 AA3 5 LYS A 236 GLN A 244 -1 N ALA A 243 O ILE A 252 SHEET 5 AA3 5 GLY A 227 LEU A 233 -1 N GLN A 229 O VAL A 240 SHEET 1 AA4 5 VAL B 107 GLU B 109 0 SHEET 2 AA4 5 ALA B 96 TYR B 101 -1 N LEU B 99 O VAL B 108 SHEET 3 AA4 5 ASN B 164 GLU B 174 -1 O ASP B 172 N ALA B 96 SHEET 4 AA4 5 ILE B 151 GLN B 161 -1 N VAL B 159 O GLY B 167 SHEET 5 AA4 5 VAL B 138 VAL B 139 -1 N VAL B 138 O GLY B 156 SHEET 1 AA5 5 VAL B 107 GLU B 109 0 SHEET 2 AA5 5 ALA B 96 TYR B 101 -1 N LEU B 99 O VAL B 108 SHEET 3 AA5 5 ASN B 164 GLU B 174 -1 O ASP B 172 N ALA B 96 SHEET 4 AA5 5 ILE B 151 GLN B 161 -1 N VAL B 159 O GLY B 167 SHEET 5 AA5 5 TYR B 143 VAL B 144 -1 N TYR B 143 O ILE B 152 SHEET 1 AA6 3 ASN B 186 LEU B 187 0 SHEET 2 AA6 3 GLY B 191 THR B 196 -1 O GLY B 191 N LEU B 187 SHEET 3 AA6 3 THR B 202 ALA B 204 -1 O ILE B 203 N ILE B 195 SHEET 1 AA7 5 ASN B 186 LEU B 187 0 SHEET 2 AA7 5 GLY B 191 THR B 196 -1 O GLY B 191 N LEU B 187 SHEET 3 AA7 5 TYR B 251 ASP B 257 -1 O GLY B 253 N PHE B 194 SHEET 4 AA7 5 LYS B 236 GLN B 244 -1 N ALA B 243 O ILE B 252 SHEET 5 AA7 5 GLY B 227 LEU B 233 -1 N LEU B 233 O LYS B 236 LINK OE1 GLU A 109 CA CA A 301 1555 1555 2.38 LINK OE2 GLU A 109 CA CA A 301 1555 1555 2.79 LINK O ASP A 111 CA CA A 301 1555 1555 2.32 LINK O TRP A 114 CA CA A 301 1555 1555 2.29 LINK OE2 GLU A 115 CA CA A 301 1555 1555 2.37 LINK CA CA A 301 O HOH A 402 1555 1555 2.66 LINK CA CA A 301 O HOH A 415 1555 1555 2.73 LINK OE1 GLU B 109 CA CA B 502 1555 1555 2.22 LINK OE2 GLU B 109 CA CA B 502 1555 1555 3.09 LINK O ASP B 111 CA CA B 502 1555 1555 2.28 LINK O TRP B 114 CA CA B 502 1555 1555 2.51 LINK OE2 GLU B 115 CA CA B 502 1555 1555 2.46 LINK CA CA B 502 O HOH B 604 1555 1555 2.83 LINK CA CA B 502 O HOH B 625 1555 1555 2.78 SITE 1 AC1 6 GLU A 109 ASP A 111 TRP A 114 GLU A 115 SITE 2 AC1 6 HOH A 402 HOH A 415 SITE 1 AC2 4 TYR A 120 ARG A 125 TRP A 127 PHE A 170 SITE 1 AC3 8 TYR B 120 ARG B 125 TRP B 127 TYR B 143 SITE 2 AC3 8 ASP B 145 ILE B 146 PHE B 170 ASP B 172 SITE 1 AC4 6 GLU B 109 ASP B 111 TRP B 114 GLU B 115 SITE 2 AC4 6 HOH B 604 HOH B 625 CRYST1 104.100 88.390 64.530 90.00 105.00 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009606 0.000000 0.002574 0.00000 SCALE2 0.000000 0.011314 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016043 0.00000