HEADER BIOSYNTHETIC PROTEIN 05-NOV-18 6IPV TITLE CRYSTAL STRUCTURE OF CQSB2 FROM STREPTOMYCES EXFOLIATUS 2419-SVT2 (APO TITLE 2 FORM) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CQSB2; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES EXFOLIATUS; SOURCE 3 ORGANISM_TAXID: 1905; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_VARIANT: RIL-CODONPLUS KEYWDS CARQUINOSTATIN A BIOSYNTHESIS, POLYKETIDE AROMATASE/CYCLASE, KEYWDS 2 BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.TOMITA,M.KOBAYASHI,M.NISHIYAMA,T.KUZUYAMA REVDAT 2 27-MAR-24 6IPV 1 REMARK REVDAT 1 16-OCT-19 6IPV 0 JRNL AUTH M.KOBAYASHI,T.TOMITA,K.SHIN-YA,M.NISHIYAMA,T.KUZUYAMA JRNL TITL AN UNPRECEDENTED CYCLIZATION MECHANISM IN THE BIOSYNTHESIS JRNL TITL 2 OF CARBAZOLE ALKALOIDS IN STREPTOMYCES. JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 58 13349 2019 JRNL REFN ESSN 1521-3773 JRNL PMID 31350791 JRNL DOI 10.1002/ANIE.201906864 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 125.72 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 50461 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2665 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3605 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.53 REMARK 3 BIN R VALUE (WORKING SET) : 0.2270 REMARK 3 BIN FREE R VALUE SET COUNT : 215 REMARK 3 BIN FREE R VALUE : 0.2590 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7212 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 394 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.250 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.199 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.145 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.757 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7408 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 6720 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10052 ; 1.368 ; 1.931 REMARK 3 BOND ANGLES OTHERS (DEGREES): 15452 ; 0.796 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 880 ; 6.838 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 392 ;38.794 ;23.878 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1228 ;14.814 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 52 ;16.107 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1028 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8464 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1804 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3532 ; 1.834 ; 3.067 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3531 ; 1.828 ; 3.067 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4408 ; 2.795 ; 4.592 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4409 ; 2.797 ; 4.592 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3876 ; 2.163 ; 3.279 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3877 ; 2.162 ; 3.279 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 5645 ; 3.566 ; 4.812 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 8890 ; 4.980 ;24.582 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 8862 ; 4.965 ;24.574 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6IPV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-NOV-18. REMARK 100 THE DEPOSITION ID IS D_1300009688. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-NOV-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53154 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 125.720 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 14.70 REMARK 200 R MERGE (I) : 0.12800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.27800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: CRANK2 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS-HCL (PH8.5), 30% (W/V) PEG REMARK 280 4000, 0.2M LISO4, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z REMARK 290 4555 Y+1/2,-X+1/2,Z REMARK 290 5555 -X+1/2,Y+1/2,-Z REMARK 290 6555 X+1/2,-Y+1/2,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 63.84350 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 63.84350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 63.84350 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 63.84350 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 63.84350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 63.84350 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 63.84350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 63.84350 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -49.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 223 REMARK 465 GLY A 224 REMARK 465 LYS A 225 REMARK 465 ALA A 226 REMARK 465 LYS A 227 REMARK 465 LEU A 228 REMARK 465 ALA A 229 REMARK 465 ALA A 230 REMARK 465 ALA A 231 REMARK 465 LEU A 232 REMARK 465 GLU A 233 REMARK 465 HIS A 234 REMARK 465 HIS A 235 REMARK 465 HIS A 236 REMARK 465 HIS A 237 REMARK 465 HIS A 238 REMARK 465 HIS A 239 REMARK 465 MET B 1 REMARK 465 ALA B 223 REMARK 465 GLY B 224 REMARK 465 LYS B 225 REMARK 465 ALA B 226 REMARK 465 LYS B 227 REMARK 465 LEU B 228 REMARK 465 ALA B 229 REMARK 465 ALA B 230 REMARK 465 ALA B 231 REMARK 465 LEU B 232 REMARK 465 GLU B 233 REMARK 465 HIS B 234 REMARK 465 HIS B 235 REMARK 465 HIS B 236 REMARK 465 HIS B 237 REMARK 465 HIS B 238 REMARK 465 HIS B 239 REMARK 465 MET C 1 REMARK 465 ALA C 223 REMARK 465 GLY C 224 REMARK 465 LYS C 225 REMARK 465 ALA C 226 REMARK 465 LYS C 227 REMARK 465 LEU C 228 REMARK 465 ALA C 229 REMARK 465 ALA C 230 REMARK 465 ALA C 231 REMARK 465 LEU C 232 REMARK 465 GLU C 233 REMARK 465 HIS C 234 REMARK 465 HIS C 235 REMARK 465 HIS C 236 REMARK 465 HIS C 237 REMARK 465 HIS C 238 REMARK 465 HIS C 239 REMARK 465 MET D 1 REMARK 465 ALA D 223 REMARK 465 GLY D 224 REMARK 465 LYS D 225 REMARK 465 ALA D 226 REMARK 465 LYS D 227 REMARK 465 LEU D 228 REMARK 465 ALA D 229 REMARK 465 ALA D 230 REMARK 465 ALA D 231 REMARK 465 LEU D 232 REMARK 465 GLU D 233 REMARK 465 HIS D 234 REMARK 465 HIS D 235 REMARK 465 HIS D 236 REMARK 465 HIS D 237 REMARK 465 HIS D 238 REMARK 465 HIS D 239 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 7 -164.16 -67.84 REMARK 500 ASN A 14 59.04 -101.43 REMARK 500 ASP A 135 -31.93 69.72 REMARK 500 ASP B 7 -163.81 -75.05 REMARK 500 ASN B 14 65.60 -107.00 REMARK 500 ASP B 135 -34.44 79.88 REMARK 500 ASP C 7 -161.90 -72.56 REMARK 500 ASN C 14 68.80 -101.20 REMARK 500 ASP C 135 -35.05 74.81 REMARK 500 ASP D 7 -162.23 -74.91 REMARK 500 ASP D 135 -31.48 71.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE B 221 GLY B 222 134.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE HAS BEEN DEPOSITED TO DDBJ WITH ACCESSION CODE REMARK 999 LC406090. DBREF 6IPV A 1 239 PDB 6IPV 6IPV 1 239 DBREF 6IPV B 1 239 PDB 6IPV 6IPV 1 239 DBREF 6IPV C 1 239 PDB 6IPV 6IPV 1 239 DBREF 6IPV D 1 239 PDB 6IPV 6IPV 1 239 SEQRES 1 A 239 MET SER GLN ARG VAL PRO ASP GLU SER GLY LEU ALA GLN SEQRES 2 A 239 ASN TYR VAL LEU ASP ARG SER ASP LEU GLN GLY LEU ASP SEQRES 3 A 239 LEU VAL TRP ASN GLU ASN THR GLY MET ASP ASP MET MET SEQRES 4 A 239 LYS LEU MET GLU SER LYS THR LYS GLU THR TYR ASP HIS SEQRES 5 A 239 GLY GLU ILE PHE GLY GLN TYR CYS SER LEU ALA GLU HIS SEQRES 6 A 239 ILE ASN VAL PRO TYR ASP ILE VAL PHE GLU TYR ALA ALA SEQRES 7 A 239 ASN ALA ARG SER LEU GLU GLU TRP THR TYR SER ILE ARG SEQRES 8 A 239 ASN MET LYS HIS LEU GLY GLY GLY LEU TYR ARG ALA ASP SEQRES 9 A 239 GLU MET ILE GLN PRO ASN THR ASP ILE TYR ILE ARG ALA SEQRES 10 A 239 GLU ALA GLN LYS GLY PRO GLU HIS GLY LEU VAL VAL TYR SEQRES 11 A 239 PRO CYS ALA TRP ASP GLN GLY HIS GLU LEU TRP MET ARG SEQRES 12 A 239 TYR TYR MET THR ILE ILE ASP SER SER LYS VAL LEU ASP SEQRES 13 A 239 LYS PRO GLY THR VAL VAL LEU TRP THR ASN CYS LYS HIS SEQRES 14 A 239 PRO TYR TYR ASP ARG SER THR GLU ASN VAL PRO ASP TYR SEQRES 15 A 239 ILE ALA GLU GLY ARG ALA ARG THR ASP ARG VAL TRP VAL SEQRES 16 A 239 GLY ASP ILE TRP PRO VAL PHE HIS ALA GLY HIS SER ILE SEQRES 17 A 239 GLU MET GLY ASN LEU LYS ARG ILE LEU GLU HIS ARG PHE SEQRES 18 A 239 GLY ALA GLY LYS ALA LYS LEU ALA ALA ALA LEU GLU HIS SEQRES 19 A 239 HIS HIS HIS HIS HIS SEQRES 1 B 239 MET SER GLN ARG VAL PRO ASP GLU SER GLY LEU ALA GLN SEQRES 2 B 239 ASN TYR VAL LEU ASP ARG SER ASP LEU GLN GLY LEU ASP SEQRES 3 B 239 LEU VAL TRP ASN GLU ASN THR GLY MET ASP ASP MET MET SEQRES 4 B 239 LYS LEU MET GLU SER LYS THR LYS GLU THR TYR ASP HIS SEQRES 5 B 239 GLY GLU ILE PHE GLY GLN TYR CYS SER LEU ALA GLU HIS SEQRES 6 B 239 ILE ASN VAL PRO TYR ASP ILE VAL PHE GLU TYR ALA ALA SEQRES 7 B 239 ASN ALA ARG SER LEU GLU GLU TRP THR TYR SER ILE ARG SEQRES 8 B 239 ASN MET LYS HIS LEU GLY GLY GLY LEU TYR ARG ALA ASP SEQRES 9 B 239 GLU MET ILE GLN PRO ASN THR ASP ILE TYR ILE ARG ALA SEQRES 10 B 239 GLU ALA GLN LYS GLY PRO GLU HIS GLY LEU VAL VAL TYR SEQRES 11 B 239 PRO CYS ALA TRP ASP GLN GLY HIS GLU LEU TRP MET ARG SEQRES 12 B 239 TYR TYR MET THR ILE ILE ASP SER SER LYS VAL LEU ASP SEQRES 13 B 239 LYS PRO GLY THR VAL VAL LEU TRP THR ASN CYS LYS HIS SEQRES 14 B 239 PRO TYR TYR ASP ARG SER THR GLU ASN VAL PRO ASP TYR SEQRES 15 B 239 ILE ALA GLU GLY ARG ALA ARG THR ASP ARG VAL TRP VAL SEQRES 16 B 239 GLY ASP ILE TRP PRO VAL PHE HIS ALA GLY HIS SER ILE SEQRES 17 B 239 GLU MET GLY ASN LEU LYS ARG ILE LEU GLU HIS ARG PHE SEQRES 18 B 239 GLY ALA GLY LYS ALA LYS LEU ALA ALA ALA LEU GLU HIS SEQRES 19 B 239 HIS HIS HIS HIS HIS SEQRES 1 C 239 MET SER GLN ARG VAL PRO ASP GLU SER GLY LEU ALA GLN SEQRES 2 C 239 ASN TYR VAL LEU ASP ARG SER ASP LEU GLN GLY LEU ASP SEQRES 3 C 239 LEU VAL TRP ASN GLU ASN THR GLY MET ASP ASP MET MET SEQRES 4 C 239 LYS LEU MET GLU SER LYS THR LYS GLU THR TYR ASP HIS SEQRES 5 C 239 GLY GLU ILE PHE GLY GLN TYR CYS SER LEU ALA GLU HIS SEQRES 6 C 239 ILE ASN VAL PRO TYR ASP ILE VAL PHE GLU TYR ALA ALA SEQRES 7 C 239 ASN ALA ARG SER LEU GLU GLU TRP THR TYR SER ILE ARG SEQRES 8 C 239 ASN MET LYS HIS LEU GLY GLY GLY LEU TYR ARG ALA ASP SEQRES 9 C 239 GLU MET ILE GLN PRO ASN THR ASP ILE TYR ILE ARG ALA SEQRES 10 C 239 GLU ALA GLN LYS GLY PRO GLU HIS GLY LEU VAL VAL TYR SEQRES 11 C 239 PRO CYS ALA TRP ASP GLN GLY HIS GLU LEU TRP MET ARG SEQRES 12 C 239 TYR TYR MET THR ILE ILE ASP SER SER LYS VAL LEU ASP SEQRES 13 C 239 LYS PRO GLY THR VAL VAL LEU TRP THR ASN CYS LYS HIS SEQRES 14 C 239 PRO TYR TYR ASP ARG SER THR GLU ASN VAL PRO ASP TYR SEQRES 15 C 239 ILE ALA GLU GLY ARG ALA ARG THR ASP ARG VAL TRP VAL SEQRES 16 C 239 GLY ASP ILE TRP PRO VAL PHE HIS ALA GLY HIS SER ILE SEQRES 17 C 239 GLU MET GLY ASN LEU LYS ARG ILE LEU GLU HIS ARG PHE SEQRES 18 C 239 GLY ALA GLY LYS ALA LYS LEU ALA ALA ALA LEU GLU HIS SEQRES 19 C 239 HIS HIS HIS HIS HIS SEQRES 1 D 239 MET SER GLN ARG VAL PRO ASP GLU SER GLY LEU ALA GLN SEQRES 2 D 239 ASN TYR VAL LEU ASP ARG SER ASP LEU GLN GLY LEU ASP SEQRES 3 D 239 LEU VAL TRP ASN GLU ASN THR GLY MET ASP ASP MET MET SEQRES 4 D 239 LYS LEU MET GLU SER LYS THR LYS GLU THR TYR ASP HIS SEQRES 5 D 239 GLY GLU ILE PHE GLY GLN TYR CYS SER LEU ALA GLU HIS SEQRES 6 D 239 ILE ASN VAL PRO TYR ASP ILE VAL PHE GLU TYR ALA ALA SEQRES 7 D 239 ASN ALA ARG SER LEU GLU GLU TRP THR TYR SER ILE ARG SEQRES 8 D 239 ASN MET LYS HIS LEU GLY GLY GLY LEU TYR ARG ALA ASP SEQRES 9 D 239 GLU MET ILE GLN PRO ASN THR ASP ILE TYR ILE ARG ALA SEQRES 10 D 239 GLU ALA GLN LYS GLY PRO GLU HIS GLY LEU VAL VAL TYR SEQRES 11 D 239 PRO CYS ALA TRP ASP GLN GLY HIS GLU LEU TRP MET ARG SEQRES 12 D 239 TYR TYR MET THR ILE ILE ASP SER SER LYS VAL LEU ASP SEQRES 13 D 239 LYS PRO GLY THR VAL VAL LEU TRP THR ASN CYS LYS HIS SEQRES 14 D 239 PRO TYR TYR ASP ARG SER THR GLU ASN VAL PRO ASP TYR SEQRES 15 D 239 ILE ALA GLU GLY ARG ALA ARG THR ASP ARG VAL TRP VAL SEQRES 16 D 239 GLY ASP ILE TRP PRO VAL PHE HIS ALA GLY HIS SER ILE SEQRES 17 D 239 GLU MET GLY ASN LEU LYS ARG ILE LEU GLU HIS ARG PHE SEQRES 18 D 239 GLY ALA GLY LYS ALA LYS LEU ALA ALA ALA LEU GLU HIS SEQRES 19 D 239 HIS HIS HIS HIS HIS FORMUL 5 HOH *394(H2 O) HELIX 1 AA1 LEU A 11 TYR A 15 5 5 HELIX 2 AA2 ASP A 18 GLN A 23 5 6 HELIX 3 AA3 GLY A 34 LYS A 45 1 12 HELIX 4 AA4 HIS A 52 GLY A 57 1 6 HELIX 5 AA5 PRO A 69 ASN A 79 1 11 HELIX 6 AA6 SER A 82 THR A 87 1 6 HELIX 7 AA7 SER A 151 ASP A 156 1 6 HELIX 8 AA8 HIS A 169 ASP A 173 5 5 HELIX 9 AA9 PRO A 180 ARG A 189 1 10 HELIX 10 AB1 TRP A 194 PRO A 200 5 7 HELIX 11 AB2 VAL A 201 GLY A 222 1 22 HELIX 12 AB3 LEU B 11 TYR B 15 5 5 HELIX 13 AB4 ASP B 18 GLN B 23 5 6 HELIX 14 AB5 GLY B 34 LYS B 45 1 12 HELIX 15 AB6 HIS B 52 GLY B 57 1 6 HELIX 16 AB7 PRO B 69 ASN B 79 1 11 HELIX 17 AB8 SER B 82 THR B 87 1 6 HELIX 18 AB9 SER B 151 ASP B 156 1 6 HELIX 19 AC1 HIS B 169 ASP B 173 5 5 HELIX 20 AC2 PRO B 180 ARG B 189 1 10 HELIX 21 AC3 TRP B 194 PRO B 200 5 7 HELIX 22 AC4 VAL B 201 GLY B 222 1 22 HELIX 23 AC5 ASP C 18 GLN C 23 5 6 HELIX 24 AC6 GLY C 34 THR C 46 1 13 HELIX 25 AC7 HIS C 52 GLY C 57 1 6 HELIX 26 AC8 PRO C 69 ASN C 79 1 11 HELIX 27 AC9 SER C 82 THR C 87 1 6 HELIX 28 AD1 SER C 151 ASP C 156 1 6 HELIX 29 AD2 HIS C 169 ASP C 173 5 5 HELIX 30 AD3 PRO C 180 ARG C 189 1 10 HELIX 31 AD4 TRP C 194 PRO C 200 5 7 HELIX 32 AD5 VAL C 201 GLY C 222 1 22 HELIX 33 AD6 LEU D 11 TYR D 15 5 5 HELIX 34 AD7 ASP D 18 GLN D 23 5 6 HELIX 35 AD8 GLY D 34 THR D 46 1 13 HELIX 36 AD9 HIS D 52 GLY D 57 1 6 HELIX 37 AE1 PRO D 69 ASN D 79 1 11 HELIX 38 AE2 SER D 82 THR D 87 1 6 HELIX 39 AE3 SER D 151 ASP D 156 1 6 HELIX 40 AE4 HIS D 169 ASP D 173 5 5 HELIX 41 AE5 PRO D 180 ARG D 189 1 10 HELIX 42 AE6 TRP D 194 PRO D 200 5 7 HELIX 43 AE7 VAL D 201 GLY D 222 1 22 SHEET 1 AA1 2 THR A 49 ASP A 51 0 SHEET 2 AA1 2 THR B 49 ASP B 51 -1 O TYR B 50 N TYR A 50 SHEET 1 AA2 7 TYR A 59 ILE A 66 0 SHEET 2 AA2 7 THR A 160 CYS A 167 -1 O THR A 160 N ILE A 66 SHEET 3 AA2 7 MET A 142 ASP A 150 -1 N ILE A 149 O VAL A 161 SHEET 4 AA2 7 HIS A 125 TRP A 134 -1 N VAL A 128 O MET A 146 SHEET 5 AA2 7 ASP A 112 ILE A 115 -1 N TYR A 114 O ALA A 133 SHEET 6 AA2 7 LEU A 100 GLU A 105 -1 N ALA A 103 O ILE A 113 SHEET 7 AA2 7 ILE A 90 GLY A 97 -1 N LEU A 96 O LEU A 100 SHEET 1 AA3 5 TYR A 59 ILE A 66 0 SHEET 2 AA3 5 THR A 160 CYS A 167 -1 O THR A 160 N ILE A 66 SHEET 3 AA3 5 MET A 142 ASP A 150 -1 N ILE A 149 O VAL A 161 SHEET 4 AA3 5 HIS A 125 TRP A 134 -1 N VAL A 128 O MET A 146 SHEET 5 AA3 5 GLU A 118 LYS A 121 -1 N GLN A 120 O LEU A 127 SHEET 1 AA4 7 TYR B 59 ILE B 66 0 SHEET 2 AA4 7 THR B 160 CYS B 167 -1 O THR B 160 N ILE B 66 SHEET 3 AA4 7 MET B 142 ASP B 150 -1 N ILE B 149 O VAL B 161 SHEET 4 AA4 7 HIS B 125 TRP B 134 -1 N VAL B 128 O MET B 146 SHEET 5 AA4 7 THR B 111 ILE B 115 -1 N TYR B 114 O ALA B 133 SHEET 6 AA4 7 LEU B 100 GLU B 105 -1 N ALA B 103 O ILE B 113 SHEET 7 AA4 7 ILE B 90 GLY B 97 -1 N LEU B 96 O LEU B 100 SHEET 1 AA5 5 TYR B 59 ILE B 66 0 SHEET 2 AA5 5 THR B 160 CYS B 167 -1 O THR B 160 N ILE B 66 SHEET 3 AA5 5 MET B 142 ASP B 150 -1 N ILE B 149 O VAL B 161 SHEET 4 AA5 5 HIS B 125 TRP B 134 -1 N VAL B 128 O MET B 146 SHEET 5 AA5 5 GLU B 118 LYS B 121 -1 N GLN B 120 O LEU B 127 SHEET 1 AA6 2 THR C 49 ASP C 51 0 SHEET 2 AA6 2 THR D 49 ASP D 51 -1 O TYR D 50 N TYR C 50 SHEET 1 AA7 7 TYR C 59 ILE C 66 0 SHEET 2 AA7 7 THR C 160 CYS C 167 -1 O THR C 160 N ILE C 66 SHEET 3 AA7 7 MET C 142 ASP C 150 -1 N ILE C 149 O VAL C 161 SHEET 4 AA7 7 HIS C 125 TRP C 134 -1 N VAL C 128 O MET C 146 SHEET 5 AA7 7 THR C 111 ILE C 115 -1 N TYR C 114 O ALA C 133 SHEET 6 AA7 7 LEU C 100 GLU C 105 -1 N ALA C 103 O ILE C 113 SHEET 7 AA7 7 ILE C 90 GLY C 97 -1 N LEU C 96 O LEU C 100 SHEET 1 AA8 5 TYR C 59 ILE C 66 0 SHEET 2 AA8 5 THR C 160 CYS C 167 -1 O THR C 160 N ILE C 66 SHEET 3 AA8 5 MET C 142 ASP C 150 -1 N ILE C 149 O VAL C 161 SHEET 4 AA8 5 HIS C 125 TRP C 134 -1 N VAL C 128 O MET C 146 SHEET 5 AA8 5 GLU C 118 LYS C 121 -1 N GLU C 118 O VAL C 129 SHEET 1 AA9 7 TYR D 59 ILE D 66 0 SHEET 2 AA9 7 THR D 160 CYS D 167 -1 O THR D 160 N ILE D 66 SHEET 3 AA9 7 MET D 142 ASP D 150 -1 N THR D 147 O LEU D 163 SHEET 4 AA9 7 HIS D 125 TRP D 134 -1 N VAL D 128 O MET D 146 SHEET 5 AA9 7 ASP D 112 ILE D 115 -1 N TYR D 114 O ALA D 133 SHEET 6 AA9 7 LEU D 100 GLU D 105 -1 N ALA D 103 O ILE D 113 SHEET 7 AA9 7 ILE D 90 GLY D 97 -1 N LEU D 96 O LEU D 100 SHEET 1 AB1 5 TYR D 59 ILE D 66 0 SHEET 2 AB1 5 THR D 160 CYS D 167 -1 O THR D 160 N ILE D 66 SHEET 3 AB1 5 MET D 142 ASP D 150 -1 N THR D 147 O LEU D 163 SHEET 4 AB1 5 HIS D 125 TRP D 134 -1 N VAL D 128 O MET D 146 SHEET 5 AB1 5 GLU D 118 LYS D 121 -1 N GLU D 118 O VAL D 129 CRYST1 127.687 127.687 125.724 90.00 90.00 90.00 P 4 21 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007832 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007832 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007954 0.00000