HEADER OXIDOREDUCTASE 09-NOV-18 6IQZ TITLE HIGH RESOLUTION STRUCTURE OF BILIRUBIN OXIDASE FROM MYROTHECIUM TITLE 2 VERRUCARIA - WILD TYPE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BILIRUBIN OXIDASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.3.3.5; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYROTHECIUM VERRUCARIA; SOURCE 3 ORGANISM_COMMON: MYROTHECIUM LEAF SPOT AND POD BLIGHT FUNGUS; SOURCE 4 ORGANISM_TAXID: 1859699; SOURCE 5 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PPICBO KEYWDS MULTICOPPER OXYDASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR N.SHIBATA,M.AKTER,Y.HIGUCHI REVDAT 4 22-NOV-23 6IQZ 1 HETSYN REVDAT 3 29-JUL-20 6IQZ 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 26-DEC-18 6IQZ 1 JRNL REVDAT 1 21-NOV-18 6IQZ 0 SPRSDE 21-NOV-18 6IQZ 5ZD6 JRNL AUTH M.AKTER,T.TOKIWA,M.SHOJI,K.NISHIKAWA,Y.SHIGETA,T.SAKURAI, JRNL AUTH 2 Y.HIGUCHI,K.KATAOKA,N.SHIBATA JRNL TITL REDOX POTENTIAL-DEPENDENT FORMATION OF AN UNUSUAL HIS-TRP JRNL TITL 2 BOND IN BILIRUBIN OXIDASE. JRNL REF CHEMISTRY V. 24 18052 2018 JRNL REFN ISSN 1521-3765 JRNL PMID 30156345 JRNL DOI 10.1002/CHEM.201803798 REMARK 2 REMARK 2 RESOLUTION. 1.46 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.14_3235: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.46 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.71 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 102509 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.132 REMARK 3 R VALUE (WORKING SET) : 0.131 REMARK 3 FREE R VALUE : 0.170 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.950 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.7231 - 3.5161 0.99 7304 146 0.1217 0.1407 REMARK 3 2 3.5161 - 2.7912 0.99 7243 144 0.1405 0.1859 REMARK 3 3 2.7912 - 2.4384 0.99 7215 143 0.1464 0.1764 REMARK 3 4 2.4384 - 2.2155 0.99 7220 144 0.1339 0.1579 REMARK 3 5 2.2155 - 2.0567 0.99 7186 143 0.1219 0.1723 REMARK 3 6 2.0567 - 1.9355 1.00 7205 143 0.1186 0.1685 REMARK 3 7 1.9355 - 1.8386 1.00 7247 144 0.1190 0.1734 REMARK 3 8 1.8386 - 1.7585 1.00 7174 143 0.1182 0.1947 REMARK 3 9 1.7585 - 1.6908 1.00 7253 145 0.1212 0.1732 REMARK 3 10 1.6908 - 1.6325 1.00 7264 144 0.1271 0.1620 REMARK 3 11 1.6325 - 1.5814 1.00 7168 142 0.1361 0.2177 REMARK 3 12 1.5814 - 1.5362 1.00 7233 145 0.1538 0.2304 REMARK 3 13 1.5362 - 1.4958 1.00 7165 142 0.1754 0.2084 REMARK 3 14 1.4958 - 1.4593 0.91 6632 132 0.2041 0.2519 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.570 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4609 REMARK 3 ANGLE : 1.127 6333 REMARK 3 CHIRALITY : 0.057 685 REMARK 3 PLANARITY : 0.006 838 REMARK 3 DIHEDRAL : 14.309 1683 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6IQZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-NOV-18. REMARK 100 THE DEPOSITION ID IS D_1300009753. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL32XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 102516 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.460 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.08800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.4100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.46 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.49 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.69100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.760 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 2XLL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM CITRATE PH 5.0, 20% (W/V) REMARK 280 PEG 8000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 69.17100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.77650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 69.17100 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 41.77650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1140 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TYR A -3 REMARK 465 VAL A -2 REMARK 465 GLU A 534 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 HIS A 401 CU CU A 604 1.60 REMARK 500 NE2 HIS A 94 CU CU A 604 1.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 54 -164.99 -123.46 REMARK 500 ALA A 87 -154.00 -116.81 REMARK 500 HIS A 136 19.35 -143.71 REMARK 500 HIS A 139 -1.09 67.24 REMARK 500 GLU A 171 -75.67 -107.06 REMARK 500 ASN A 197 -65.88 -102.97 REMARK 500 TRP A 211 66.57 31.45 REMARK 500 SER A 255 -165.54 -117.69 REMARK 500 SER A 255 -148.86 -112.31 REMARK 500 ALA A 274 -5.52 82.00 REMARK 500 LEU A 404 -51.43 68.26 REMARK 500 THR A 420 -139.13 -124.95 REMARK 500 HIS A 465 56.89 -145.10 REMARK 500 ASP A 466 53.35 -157.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1235 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH A1236 DISTANCE = 6.06 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 602 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 96 ND1 REMARK 620 2 HIS A 134 NE2 137.9 REMARK 620 3 HIS A 458 NE2 112.9 106.9 REMARK 620 4 HOH A1096 O 103.1 98.5 76.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 603 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 136 NE2 REMARK 620 2 HIS A 403 NE2 129.6 REMARK 620 3 HIS A 456 NE2 105.9 114.9 REMARK 620 4 HOH A1096 O 93.0 111.6 93.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 601 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 398 ND1 REMARK 620 2 CYS A 457 SG 130.2 REMARK 620 3 HIS A 462 ND1 100.7 127.5 REMARK 620 N 1 2 DBREF 6IQZ A 1 534 UNP Q12737 BLRO_MYRVE 39 572 SEQADV 6IQZ TYR A -3 UNP Q12737 EXPRESSION TAG SEQADV 6IQZ VAL A -2 UNP Q12737 EXPRESSION TAG SEQADV 6IQZ GLU A -1 UNP Q12737 EXPRESSION TAG SEQADV 6IQZ PHE A 0 UNP Q12737 EXPRESSION TAG SEQRES 1 A 538 TYR VAL GLU PHE VAL ALA GLN ILE SER PRO GLN TYR PRO SEQRES 2 A 538 MET PHE THR VAL PRO LEU PRO ILE PRO PRO VAL LYS GLN SEQRES 3 A 538 PRO ARG LEU THR VAL THR ASN PRO VAL ASN GLY GLN GLU SEQRES 4 A 538 ILE TRP TYR TYR GLU VAL GLU ILE LYS PRO PHE THR HIS SEQRES 5 A 538 GLN VAL TYR PRO ASP LEU GLY SER ALA ASP LEU VAL GLY SEQRES 6 A 538 TYR ASP GLY MET SER PRO GLY PRO THR PHE GLN VAL PRO SEQRES 7 A 538 ARG GLY VAL GLU THR VAL VAL ARG PHE ILE ASN ASN ALA SEQRES 8 A 538 GLU ALA PRO ASN SER VAL HIS LEU HIS GLY SER PHE SER SEQRES 9 A 538 ARG ALA ALA PHE ASP GLY TRP ALA GLU ASP ILE THR GLU SEQRES 10 A 538 PRO GLY SER PHE LYS ASP TYR TYR TYR PRO ASN ARG GLN SEQRES 11 A 538 SER ALA ARG THR LEU TRP TYR HIS ASP HIS ALA MET HIS SEQRES 12 A 538 ILE THR ALA GLU ASN ALA TYR ARG GLY GLN ALA GLY LEU SEQRES 13 A 538 TYR MET LEU THR ASP PRO ALA GLU ASP ALA LEU ASN LEU SEQRES 14 A 538 PRO SER GLY TYR GLY GLU PHE ASP ILE PRO MET ILE LEU SEQRES 15 A 538 THR SER LYS GLN TYR THR ALA ASN GLY ASN LEU VAL THR SEQRES 16 A 538 THR ASN GLY GLU LEU ASN SER PHE TRP GLY ASP VAL ILE SEQRES 17 A 538 HIS VAL ASN GLY GLN PRO TRP PRO PHE LYS ASN VAL GLU SEQRES 18 A 538 PRO ARG LYS TYR ARG PHE ARG PHE LEU ASP ALA ALA VAL SEQRES 19 A 538 SER ARG SER PHE GLY LEU TYR PHE ALA ASP THR ASP ALA SEQRES 20 A 538 ILE ASP THR ARG LEU PRO PHE LYS VAL ILE ALA SER ASP SEQRES 21 A 538 SER GLY LEU LEU GLU HIS PRO ALA ASP THR SER LEU LEU SEQRES 22 A 538 TYR ILE SER MET ALA GLU ARG TYR GLU VAL VAL PHE ASP SEQRES 23 A 538 PHE SER ASP TYR ALA GLY LYS THR ILE GLU LEU ARG ASN SEQRES 24 A 538 LEU GLY GLY SER ILE GLY GLY ILE GLY THR ASP THR ASP SEQRES 25 A 538 TYR ASP ASN THR ASP LYS VAL MET ARG PHE VAL VAL ALA SEQRES 26 A 538 ASP ASP THR THR GLN PRO ASP THR SER VAL VAL PRO ALA SEQRES 27 A 538 ASN LEU ARG ASP VAL PRO PHE PRO SER PRO THR THR ASN SEQRES 28 A 538 THR PRO ARG GLN PHE ARG PHE GLY ARG THR GLY PRO THR SEQRES 29 A 538 TRP THR ILE ASN GLY VAL ALA PHE ALA ASP VAL GLN ASN SEQRES 30 A 538 ARG LEU LEU ALA ASN VAL PRO VAL GLY THR VAL GLU ARG SEQRES 31 A 538 TRP GLU LEU ILE ASN ALA GLY ASN GLY TRP THR HIS PRO SEQRES 32 A 538 ILE HIS ILE HIS LEU VAL ASP PHE LYS VAL ILE SER ARG SEQRES 33 A 538 THR SER GLY ASN ASN ALA ARG THR VAL MET PRO TYR GLU SEQRES 34 A 538 SER GLY LEU LYS ASP VAL VAL TRP LEU GLY ARG ARG GLU SEQRES 35 A 538 THR VAL VAL VAL GLU ALA HIS TYR ALA PRO PHE PRO GLY SEQRES 36 A 538 VAL TYR MET PHE HIS CYS HIS ASN LEU ILE HIS GLU ASP SEQRES 37 A 538 HIS ASP MET MET ALA ALA PHE ASN ALA THR VAL LEU PRO SEQRES 38 A 538 ASP TYR GLY TYR ASN ALA THR VAL PHE VAL ASP PRO MET SEQRES 39 A 538 GLU GLU LEU TRP GLN ALA ARG PRO TYR GLU LEU GLY GLU SEQRES 40 A 538 PHE GLN ALA GLN SER GLY GLN PHE SER VAL GLN ALA VAL SEQRES 41 A 538 THR GLU ARG ILE GLN THR MET ALA GLU TYR ARG PRO TYR SEQRES 42 A 538 ALA ALA ALA ASP GLU HET NAG B 1 14 HET NAG B 2 14 HET MAN B 3 11 HET CU A 601 1 HET CU A 602 1 HET CU A 603 1 HET CU A 604 1 HET NAG A 608 14 HET GOL A 609 6 HET GOL A 610 6 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM CU COPPER (II) ION HETNAM GOL GLYCEROL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 NAG 3(C8 H15 N O6) FORMUL 2 MAN C6 H12 O6 FORMUL 3 CU 4(CU 2+) FORMUL 8 GOL 2(C3 H8 O3) FORMUL 10 HOH *536(H2 O) HELIX 1 AA1 ARG A 101 ASP A 105 5 5 HELIX 2 AA2 ILE A 140 ARG A 147 1 8 HELIX 3 AA3 ASP A 157 ALA A 162 1 6 HELIX 4 AA4 SER A 284 ALA A 287 5 4 HELIX 5 AA5 LEU A 296 GLY A 302 1 7 HELIX 6 AA6 MET A 422 SER A 426 5 5 HELIX 7 AA7 ASN A 459 HIS A 465 1 7 HELIX 8 AA8 ASN A 482 PHE A 486 5 5 HELIX 9 AA9 GLU A 491 GLN A 495 5 5 HELIX 10 AB1 GLU A 500 GLN A 507 1 8 HELIX 11 AB2 SER A 508 PHE A 511 5 4 HELIX 12 AB3 SER A 512 TYR A 526 1 15 HELIX 13 AB4 TYR A 529 ASP A 533 5 5 SHEET 1 AA1 3 LEU A 25 THR A 28 0 SHEET 2 AA1 3 GLU A 35 HIS A 48 -1 O ILE A 36 N VAL A 27 SHEET 3 AA1 3 ALA A 57 TYR A 62 -1 O ALA A 57 N HIS A 48 SHEET 1 AA2 5 LEU A 25 THR A 28 0 SHEET 2 AA2 5 GLU A 35 HIS A 48 -1 O ILE A 36 N VAL A 27 SHEET 3 AA2 5 THR A 79 ASN A 85 1 O ILE A 84 N VAL A 41 SHEET 4 AA2 5 SER A 116 TYR A 122 -1 O TYR A 122 N THR A 79 SHEET 5 AA2 5 ARG A 497 PRO A 498 -1 O ARG A 497 N PHE A 117 SHEET 1 AA3 4 GLY A 68 PRO A 74 0 SHEET 2 AA3 4 ALA A 150 THR A 156 1 O MET A 154 N PHE A 71 SHEET 3 AA3 4 ARG A 129 ASP A 135 -1 N LEU A 131 O TYR A 153 SHEET 4 AA3 4 VAL A 93 HIS A 96 -1 N HIS A 94 O HIS A 134 SHEET 1 AA4 7 GLN A 209 PRO A 210 0 SHEET 2 AA4 7 VAL A 203 VAL A 206 -1 N VAL A 206 O GLN A 209 SHEET 3 AA4 7 ASP A 173 LYS A 181 -1 N THR A 179 O HIS A 205 SHEET 4 AA4 7 LYS A 220 ASP A 227 1 O ARG A 222 N ILE A 174 SHEET 5 AA4 7 ARG A 276 ASP A 282 -1 O VAL A 279 N PHE A 223 SHEET 6 AA4 7 PHE A 250 SER A 255 -1 N ILE A 253 O GLU A 278 SHEET 7 AA4 7 GLY A 258 THR A 266 -1 O THR A 266 N PHE A 250 SHEET 1 AA5 5 PHE A 213 VAL A 216 0 SHEET 2 AA5 5 LYS A 314 VAL A 320 1 O VAL A 319 N VAL A 216 SHEET 3 AA5 5 THR A 290 ASN A 295 -1 N ILE A 291 O PHE A 318 SHEET 4 AA5 5 PHE A 234 ASP A 240 -1 N TYR A 237 O ARG A 294 SHEET 5 AA5 5 LEU A 269 ILE A 271 -1 O ILE A 271 N PHE A 234 SHEET 1 AA6 5 THR A 360 ILE A 363 0 SHEET 2 AA6 5 ARG A 350 THR A 357 -1 N THR A 357 O THR A 360 SHEET 3 AA6 5 VAL A 384 ILE A 390 1 O ILE A 390 N PHE A 352 SHEET 4 AA6 5 GLU A 438 HIS A 445 -1 O VAL A 440 N LEU A 389 SHEET 5 AA6 5 PHE A 407 SER A 414 -1 N ILE A 410 O VAL A 441 SHEET 1 AA7 5 LEU A 375 PRO A 380 0 SHEET 2 AA7 5 MET A 468 THR A 474 1 O ASN A 472 N VAL A 379 SHEET 3 AA7 5 GLY A 451 CYS A 457 -1 N PHE A 455 O ALA A 469 SHEET 4 AA7 5 HIS A 398 ILE A 402 -1 N HIS A 401 O HIS A 456 SHEET 5 AA7 5 VAL A 431 LEU A 434 -1 O VAL A 432 N ILE A 400 LINK CD1 TRP A 396 NE2 HIS A 398 1555 1555 1.40 LINK ND2 ASN A 472 C1 NAG B 1 1555 1555 1.44 LINK ND2 ASN A 482 C1 NAG A 608 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.43 LINK O4 NAG B 2 C1 MAN B 3 1555 1555 1.45 LINK ND1 HIS A 96 CU CU A 602 1555 1555 2.01 LINK NE2 HIS A 134 CU CU A 602 1555 1555 1.99 LINK NE2 HIS A 136 CU CU A 603 1555 1555 2.05 LINK ND1 HIS A 398 CU CU A 601 1555 1555 2.07 LINK NE2 HIS A 403 CU CU A 603 1555 1555 2.00 LINK NE2 HIS A 456 CU CU A 603 1555 1555 1.91 LINK SG CYS A 457 CU CU A 601 1555 1555 2.16 LINK NE2 HIS A 458 CU CU A 602 1555 1555 2.22 LINK ND1 HIS A 462 CU CU A 601 1555 1555 2.05 LINK CU CU A 602 O HOH A1096 1555 1555 2.69 LINK CU CU A 603 O HOH A1096 1555 1555 2.29 CISPEP 1 SER A 66 PRO A 67 0 -4.36 CISPEP 2 ALA A 447 PRO A 448 0 3.64 CISPEP 3 HIS A 465 ASP A 466 0 10.64 CRYST1 138.342 83.553 52.690 90.00 95.73 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007228 0.000000 0.000725 0.00000 SCALE2 0.000000 0.011968 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019074 0.00000