HEADER ONCOPROTEIN 26-NOV-18 6ITV TITLE CRYSTAL STRUCTURE OF ACTIVATED C-KIT IN COMPLEX WITH COMPOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAST/STEM CELL GROWTH FACTOR RECEPTOR KIT; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SCFR,PIEBALD TRAIT PROTEIN,PBT,PROTO-ONCOGENE C-KIT, COMPND 5 TYROSINE-PROTEIN KINASE KIT,P145 C-KIT,V-KIT HARDY-ZUCKERMAN 4 FELINE COMPND 6 SARCOMA VIRAL ONCOGENE HOMOLOG; COMPND 7 EC: 2.7.10.1; COMPND 8 ENGINEERED: YES; COMPND 9 OTHER_DETAILS: KINASE DOMAIN, RESIDUE 547-693 AND 754-935 FROM UNP COMPND 10 P10721, LINKED WITH TS SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KIT, SCFR; SOURCE 6 EXPRESSION_SYSTEM: UNIDENTIFIED BACULOVIRUS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 10469 KEYWDS RECEPTOR TYROSINE KINASE DFG MOTIF CONFORMATIONAL CONTROL INHIBITOR, KEYWDS 2 ONCOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.S.WU,S.Y.WU REVDAT 1 27-NOV-19 6ITV 0 JRNL AUTH T.S.WU,S.Y.WU JRNL TITL CRYSTAL STRUCTURE OF ACTIVATED C-KIT IN COMPLEX WITH JRNL TITL 2 COMPOUND JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.88 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_2621 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.88 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.77 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 30161 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.630 REMARK 3 FREE R VALUE TEST SET COUNT : 1999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.7698 - 4.5261 0.96 2157 153 0.1674 0.2566 REMARK 3 2 4.5261 - 3.5953 1.00 2083 148 0.1450 0.1727 REMARK 3 3 3.5953 - 3.1416 1.00 2038 144 0.1759 0.2123 REMARK 3 4 3.1416 - 2.8547 1.00 2033 145 0.1950 0.2504 REMARK 3 5 2.8547 - 2.6503 1.00 2026 143 0.2007 0.2450 REMARK 3 6 2.6503 - 2.4942 1.00 1986 141 0.1925 0.2212 REMARK 3 7 2.4942 - 2.3693 1.00 2016 142 0.1839 0.2427 REMARK 3 8 2.3693 - 2.2663 1.00 1987 142 0.1854 0.2417 REMARK 3 9 2.2663 - 2.1791 1.00 1989 141 0.1882 0.2324 REMARK 3 10 2.1791 - 2.1039 1.00 1986 141 0.1985 0.2877 REMARK 3 11 2.1039 - 2.0381 1.00 1982 141 0.2065 0.2696 REMARK 3 12 2.0381 - 1.9799 1.00 1961 139 0.2241 0.2396 REMARK 3 13 1.9799 - 1.9278 1.00 1933 139 0.2358 0.3008 REMARK 3 14 1.9278 - 1.8808 1.00 1985 140 0.2709 0.3154 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.060 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.42 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2482 REMARK 3 ANGLE : 0.828 3362 REMARK 3 CHIRALITY : 0.052 363 REMARK 3 PLANARITY : 0.005 423 REMARK 3 DIHEDRAL : 11.350 2045 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 569 THROUGH 600 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.7110 -7.3763 -28.6497 REMARK 3 T TENSOR REMARK 3 T11: 0.1851 T22: 0.2439 REMARK 3 T33: 0.1150 T12: -0.0153 REMARK 3 T13: -0.0674 T23: -0.0086 REMARK 3 L TENSOR REMARK 3 L11: 3.4236 L22: 5.6260 REMARK 3 L33: 3.3779 L12: -0.2025 REMARK 3 L13: -0.3500 L23: -0.4465 REMARK 3 S TENSOR REMARK 3 S11: -0.0801 S12: -0.0345 S13: 0.3158 REMARK 3 S21: -0.1673 S22: 0.0700 S23: -0.0681 REMARK 3 S31: -0.2091 S32: -0.0064 S33: -0.0039 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 601 THROUGH 666 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.9635 -10.4474 -27.1716 REMARK 3 T TENSOR REMARK 3 T11: 0.1898 T22: 0.1597 REMARK 3 T33: 0.1792 T12: -0.0152 REMARK 3 T13: -0.0013 T23: 0.0194 REMARK 3 L TENSOR REMARK 3 L11: 2.3703 L22: 3.7243 REMARK 3 L33: 3.7252 L12: 0.0181 REMARK 3 L13: -1.4423 L23: 1.5147 REMARK 3 S TENSOR REMARK 3 S11: 0.0005 S12: 0.0363 S13: 0.0203 REMARK 3 S21: -0.2372 S22: 0.0086 S23: -0.1135 REMARK 3 S31: -0.0634 S32: 0.0721 S33: -0.0151 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 667 THROUGH 758 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.8508 -20.5273 -11.3654 REMARK 3 T TENSOR REMARK 3 T11: 0.3508 T22: 0.2290 REMARK 3 T33: 0.3122 T12: -0.0332 REMARK 3 T13: 0.0080 T23: -0.0003 REMARK 3 L TENSOR REMARK 3 L11: 3.0761 L22: 1.7344 REMARK 3 L33: 8.1551 L12: -1.7613 REMARK 3 L13: 0.9419 L23: -0.1792 REMARK 3 S TENSOR REMARK 3 S11: -0.2291 S12: -0.6613 S13: -0.6334 REMARK 3 S21: 0.0887 S22: 0.0240 S23: 0.2098 REMARK 3 S31: 0.9694 S32: -0.2841 S33: 0.2016 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 759 THROUGH 786 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.4637 -10.7484 -1.6693 REMARK 3 T TENSOR REMARK 3 T11: 0.2498 T22: 0.2771 REMARK 3 T33: 0.2195 T12: 0.0066 REMARK 3 T13: -0.0007 T23: -0.0469 REMARK 3 L TENSOR REMARK 3 L11: 2.4209 L22: 3.4805 REMARK 3 L33: 9.5546 L12: -0.4410 REMARK 3 L13: 0.5363 L23: -5.5680 REMARK 3 S TENSOR REMARK 3 S11: -0.0534 S12: -0.3580 S13: -0.0618 REMARK 3 S21: 0.1672 S22: 0.1182 S23: -0.0499 REMARK 3 S31: 0.0822 S32: -0.2022 S33: -0.1016 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 787 THROUGH 863 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.8254 -7.9311 -14.5154 REMARK 3 T TENSOR REMARK 3 T11: 0.2217 T22: 0.3563 REMARK 3 T33: 0.2447 T12: 0.0033 REMARK 3 T13: -0.0483 T23: 0.0236 REMARK 3 L TENSOR REMARK 3 L11: 2.3387 L22: 2.6496 REMARK 3 L33: 2.8680 L12: -0.6615 REMARK 3 L13: -1.0129 L23: 0.3938 REMARK 3 S TENSOR REMARK 3 S11: 0.0188 S12: 0.3331 S13: 0.0653 REMARK 3 S21: -0.2796 S22: -0.0173 S23: 0.3534 REMARK 3 S31: -0.1435 S32: -0.7135 S33: 0.0037 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 864 THROUGH 896 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.1849 -10.0351 -5.0172 REMARK 3 T TENSOR REMARK 3 T11: 0.2333 T22: 0.5841 REMARK 3 T33: 0.4134 T12: -0.0121 REMARK 3 T13: 0.0165 T23: 0.0231 REMARK 3 L TENSOR REMARK 3 L11: 6.1401 L22: 3.2621 REMARK 3 L33: 2.9701 L12: -0.9600 REMARK 3 L13: 0.2779 L23: 1.2122 REMARK 3 S TENSOR REMARK 3 S11: 0.1769 S12: 0.0724 S13: -0.1646 REMARK 3 S21: -0.2276 S22: -0.0501 S23: 0.6784 REMARK 3 S31: 0.0684 S32: -1.0631 S33: -0.1692 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 897 THROUGH 916 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.3237 0.1387 -0.2924 REMARK 3 T TENSOR REMARK 3 T11: 0.2596 T22: 0.2887 REMARK 3 T33: 0.2513 T12: 0.0815 REMARK 3 T13: 0.0461 T23: -0.0357 REMARK 3 L TENSOR REMARK 3 L11: 4.1659 L22: 5.6699 REMARK 3 L33: 5.9694 L12: 0.4593 REMARK 3 L13: 0.1596 L23: -3.9289 REMARK 3 S TENSOR REMARK 3 S11: 0.1355 S12: -0.0989 S13: 0.2123 REMARK 3 S21: 0.2986 S22: 0.1706 S23: 0.3616 REMARK 3 S31: -0.6017 S32: -0.5266 S33: -0.2779 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 917 THROUGH 935 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.6921 -4.3885 6.0944 REMARK 3 T TENSOR REMARK 3 T11: 0.5136 T22: 0.3931 REMARK 3 T33: 0.2823 T12: -0.0323 REMARK 3 T13: -0.0320 T23: -0.0747 REMARK 3 L TENSOR REMARK 3 L11: 4.8088 L22: 5.6358 REMARK 3 L33: 4.4700 L12: -3.7209 REMARK 3 L13: 3.4526 L23: -4.9922 REMARK 3 S TENSOR REMARK 3 S11: -0.2263 S12: -0.5231 S13: 0.0005 REMARK 3 S21: 1.1317 S22: 0.0647 S23: -0.4246 REMARK 3 S31: -0.3575 S32: 0.3019 S33: 0.1795 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6ITV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-DEC-18. REMARK 100 THE DEPOSITION ID IS D_1300009935. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-APR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL15A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30279 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.880 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.88 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 0.65400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 3350, 0.1M SODIUM CITRATE REMARK 280 TRIBASIC DIHYDRATE, PH 5.6, 3% ETHYLENE GLYCOL, 3% 1,6- REMARK 280 HEXANEDIOL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 98.99200 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 29.92650 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 29.92650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 148.48800 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 29.92650 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 29.92650 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 49.49600 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 29.92650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 29.92650 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 148.48800 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 29.92650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 29.92650 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 49.49600 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 98.99200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 59.85300 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 -59.85300 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TYR A 547 REMARK 465 LEU A 548 REMARK 465 GLN A 549 REMARK 465 LYS A 550 REMARK 465 PRO A 551 REMARK 465 MET A 552 REMARK 465 TYR A 553 REMARK 465 GLU A 554 REMARK 465 VAL A 555 REMARK 465 GLN A 556 REMARK 465 TRP A 557 REMARK 465 LYS A 558 REMARK 465 VAL A 559 REMARK 465 VAL A 560 REMARK 465 GLU A 561 REMARK 465 GLU A 562 REMARK 465 ILE A 563 REMARK 465 ASN A 564 REMARK 465 GLY A 565 REMARK 465 ASN A 566 REMARK 465 ASN A 567 REMARK 465 TYR A 568 REMARK 465 PHE A 747 REMARK 465 ILE A 748 REMARK 465 CYS A 749 REMARK 465 SER A 750 REMARK 465 LYS A 751 REMARK 465 THR A 752 REMARK 465 SER A 753 REMARK 465 PRO A 754 REMARK 465 ALA A 755 REMARK 465 ILE A 756 REMARK 465 MET A 757 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 791 -8.84 81.42 REMARK 500 ASP A 792 44.06 -147.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1327 DISTANCE = 5.93 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AWO A 1001 DBREF 6ITV A 547 751 UNP P10721 KIT_HUMAN 547 693 DBREF 6ITV A 754 935 UNP P10721 KIT_HUMAN 754 935 SEQADV 6ITV THR A 752 UNP P10721 LINKER SEQADV 6ITV SER A 753 UNP P10721 LINKER SEQRES 1 A 331 TYR LEU GLN LYS PRO MET TYR GLU VAL GLN TRP LYS VAL SEQRES 2 A 331 VAL GLU GLU ILE ASN GLY ASN ASN TYR VAL PTR ILE ASP SEQRES 3 A 331 PRO THR GLN LEU PRO TYR ASP HIS LYS TRP GLU PHE PRO SEQRES 4 A 331 ARG ASN ARG LEU SER PHE GLY LYS THR LEU GLY ALA GLY SEQRES 5 A 331 ALA PHE GLY LYS VAL VAL GLU ALA THR ALA TYR GLY LEU SEQRES 6 A 331 ILE LYS SER ASP ALA ALA MET THR VAL ALA VAL LYS MET SEQRES 7 A 331 LEU LYS PRO SER ALA HIS LEU THR GLU ARG GLU ALA LEU SEQRES 8 A 331 MET SER GLU LEU LYS VAL LEU SER TYR LEU GLY ASN HIS SEQRES 9 A 331 MET ASN ILE VAL ASN LEU LEU GLY ALA CYS THR ILE GLY SEQRES 10 A 331 GLY PRO THR LEU VAL ILE THR GLU TYR CYS CYS TYR GLY SEQRES 11 A 331 ASP LEU LEU ASN PHE LEU ARG ARG LYS ARG ASP SER PHE SEQRES 12 A 331 ILE CYS SER LYS THR SER PRO ALA ILE MET GLU ASP ASP SEQRES 13 A 331 GLU LEU ALA LEU ASP LEU GLU ASP LEU LEU SER PHE SER SEQRES 14 A 331 TYR GLN VAL ALA LYS GLY MET ALA PHE LEU ALA SER LYS SEQRES 15 A 331 ASN CYS ILE HIS ARG ASP LEU ALA ALA ARG ASN ILE LEU SEQRES 16 A 331 LEU THR HIS GLY ARG ILE THR LYS ILE CYS ASP PHE GLY SEQRES 17 A 331 LEU ALA ARG ASP ILE LYS ASN ASP SER ASN TYR VAL VAL SEQRES 18 A 331 LYS GLY ASN ALA ARG LEU PRO VAL LYS TRP MET ALA PRO SEQRES 19 A 331 GLU SER ILE PHE ASN CYS VAL TYR THR PHE GLU SER ASP SEQRES 20 A 331 VAL TRP SER TYR GLY ILE PHE LEU TRP GLU LEU PHE SER SEQRES 21 A 331 LEU GLY SER SER PRO TYR PRO GLY MET PRO VAL ASP SER SEQRES 22 A 331 LYS PHE TYR LYS MET ILE LYS GLU GLY PHE ARG MET LEU SEQRES 23 A 331 SER PRO GLU HIS ALA PRO ALA GLU MET TYR ASP ILE MET SEQRES 24 A 331 LYS THR CYS TRP ASP ALA ASP PRO LEU LYS ARG PRO THR SEQRES 25 A 331 PHE LYS GLN ILE VAL GLN LEU ILE GLU LYS GLN ILE SER SEQRES 26 A 331 GLU SER THR ASN HIS ILE MODRES 6ITV PTR A 570 TYR MODIFIED RESIDUE HET PTR A 570 16 HET AWO A1001 37 HETNAM PTR O-PHOSPHOTYROSINE HETNAM AWO N-(5-ETHYL-1,2-OXAZOL-3-YL)-N'-[4-(2-{[6-(4- HETNAM 2 AWO ETHYLPYRAZIN-1(4H)-YL)PYRIMIDIN-4-YL]AMINO}-1,3- HETNAM 3 AWO THIAZOL-5-YL)PHENYL]UREA HETSYN PTR PHOSPHONOTYROSINE FORMUL 1 PTR C9 H12 N O6 P FORMUL 2 AWO C25 H25 N9 O2 S FORMUL 3 HOH *227(H2 O) HELIX 1 AA1 ASP A 572 LEU A 576 5 5 HELIX 2 AA2 ASP A 579 GLU A 583 5 5 HELIX 3 AA3 PRO A 585 ASN A 587 5 3 HELIX 4 AA4 HIS A 630 GLY A 648 1 19 HELIX 5 AA5 ASP A 677 ASP A 687 1 11 HELIX 6 AA6 ASP A 759 LYS A 786 1 28 HELIX 7 AA7 ALA A 794 ARG A 796 5 3 HELIX 8 AA8 HIS A 802 ARG A 804 5 3 HELIX 9 AA9 PHE A 811 ARG A 815 5 5 HELIX 10 AB1 ASP A 816 ASP A 820 5 5 HELIX 11 AB2 PRO A 832 MET A 836 5 5 HELIX 12 AB3 ALA A 837 CYS A 844 1 8 HELIX 13 AB4 THR A 847 SER A 864 1 18 HELIX 14 AB5 ASP A 876 GLY A 886 1 11 HELIX 15 AB6 PRO A 896 TRP A 907 1 12 HELIX 16 AB7 ASP A 910 ARG A 914 5 5 HELIX 17 AB8 THR A 916 THR A 932 1 17 SHEET 1 AA1 5 LEU A 589 ALA A 597 0 SHEET 2 AA1 5 GLY A 601 TYR A 609 -1 O GLU A 605 N GLY A 592 SHEET 3 AA1 5 ALA A 617 LEU A 625 -1 O VAL A 620 N ALA A 606 SHEET 4 AA1 5 LEU A 667 GLU A 671 -1 O THR A 670 N ALA A 621 SHEET 5 AA1 5 LEU A 656 CYS A 660 -1 N LEU A 657 O ILE A 669 SHEET 1 AA2 2 ILE A 798 THR A 801 0 SHEET 2 AA2 2 ILE A 805 ILE A 808 -1 O LYS A 807 N LEU A 799 SHEET 1 AA3 2 VAL A 824 LYS A 826 0 SHEET 2 AA3 2 ALA A 829 LEU A 831 -1 O LEU A 831 N VAL A 824 LINK C VAL A 569 N PTR A 570 1555 1555 1.33 LINK C PTR A 570 N ILE A 571 1555 1555 1.33 SITE 1 AC1 19 HIS A 580 LEU A 595 ALA A 621 LYS A 623 SITE 2 AC1 19 GLU A 640 ILE A 653 THR A 670 GLU A 671 SITE 3 AC1 19 TYR A 672 CYS A 673 GLY A 676 ASP A 760 SITE 4 AC1 19 LEU A 799 ILE A 808 CYS A 809 ASP A 810 SITE 5 AC1 19 PHE A 811 HOH A1171 HOH A1212 CRYST1 59.853 59.853 197.984 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016708 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016708 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005051 0.00000