HEADER TRANSCRIPTION 04-DEC-18 6IVU TITLE SOLUTION STRUCTURE OF THE SIGMA-ANTI-SIGMA FACTOR COMPLEX RSGI1N- TITLE 2 SIGI1C FROM CLOSTRIDIUM THERMOCELLUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTI-SIGMA-I FACTOR RSGI1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: RNA POLYMERASE SIGMA FACTOR SIGI1; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUNGATEICLOSTRIDIUM THERMOCELLUM ATCC 27405; SOURCE 3 ORGANISM_COMMON: RUMINICLOSTRIDIUM THERMOCELLUM; SOURCE 4 ORGANISM_TAXID: 203119; SOURCE 5 STRAIN: ATCC 27405; SOURCE 6 ATCC: 27405; SOURCE 7 GENE: CTHE_0059; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 EXPRESSION_SYSTEM_CELL_LINE: ROSSETA (DE3); SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: CLOSTRIDIUM THERMOCELLUM; SOURCE 13 ORGANISM_COMMON: HUNGATEICLOSTRIDIUM THERMOCELLUM ATCC 27405; SOURCE 14 ORGANISM_TAXID: 203119; SOURCE 15 STRAIN: ATCC 27405; SOURCE 16 ATCC: 27405; SOURCE 17 GENE: SIGI1, CTHE_0058; SOURCE 18 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 20 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS SIGMA FACTOR, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR Z.WEI,Y.FENG REVDAT 5 15-MAY-24 6IVU 1 REMARK REVDAT 4 14-JUN-23 6IVU 1 REMARK REVDAT 3 03-JUL-19 6IVU 1 JRNL REMARK REVDAT 2 05-JUN-19 6IVU 1 JRNL REVDAT 1 15-MAY-19 6IVU 0 JRNL AUTH Z.WEI,C.CHEN,Y.J.LIU,S.DONG,J.LI,K.QI,S.LIU,X.DING, JRNL AUTH 2 L.ORTIZ DE ORA,I.MUNOZ-GUTIERREZ,Y.LI,H.YAO,R.LAMED, JRNL AUTH 3 E.A.BAYER,Q.CUI,Y.FENG JRNL TITL ALTERNATIVE SIGMA I/ANTI-SIGMA I FACTORS REPRESENT A UNIQUE JRNL TITL 2 FORM OF BACTERIAL SIGMA /ANTI-SIGMA COMPLEX. JRNL REF NUCLEIC ACIDS RES. V. 47 5988 2019 JRNL REFN ESSN 1362-4962 JRNL PMID 31106374 JRNL DOI 10.1093/NAR/GKZ355 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6IVU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-DEC-18. REMARK 100 THE DEPOSITION ID IS D_1300010044. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1 MM [U-13C; U-15N] RSGI1N, 1 MM REMARK 210 [U-13C; U-15N] SIGI1C, 20 MM BIS- REMARK 210 TRIS, 50 MM SODIUM CHLORIDE, 2 REMARK 210 MM EDTA, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCO; 3D HNCA; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D HN(CA)CO; 3D REMARK 210 HBHA(CO)NH; 3D HBHANH; 3D HCCH- REMARK 210 TOCSY; 3D HCCH-COSY; 3D CCH- REMARK 210 TOCSY; 3D CCH-COSY; 3D 1H-15N REMARK 210 NOESY; 3D 1H-13C NOESY ALIPHATIC; REMARK 210 3D 1H-13C NOESY AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 850 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS, NMRVIEW REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 50 111.31 67.04 REMARK 500 1 ASP B 142 75.23 -101.52 REMARK 500 1 PRO B 204 81.20 -68.84 REMARK 500 1 ASN B 236 10.68 -67.73 REMARK 500 2 MET A 1 78.09 -105.53 REMARK 500 2 ARG A 50 -53.04 73.53 REMARK 500 2 GLU B 141 156.97 70.78 REMARK 500 2 PRO B 204 90.43 -67.78 REMARK 500 3 PRO B 204 96.08 -67.54 REMARK 500 3 HIS B 254 17.37 -154.12 REMARK 500 4 MET A 1 125.97 -176.46 REMARK 500 4 GLN A 11 79.36 -109.45 REMARK 500 4 ASP B 142 54.66 -103.73 REMARK 500 4 PRO B 204 86.06 -69.47 REMARK 500 5 MET A 1 83.50 -166.41 REMARK 500 5 GLN A 11 79.27 -109.52 REMARK 500 5 PRO B 204 88.49 -68.73 REMARK 500 5 HIS B 253 -55.96 -131.35 REMARK 500 6 MET A 1 107.14 -170.72 REMARK 500 6 ASP B 142 44.34 -98.23 REMARK 500 6 PRO B 204 96.96 -67.99 REMARK 500 7 MET A 1 93.88 58.81 REMARK 500 7 GLN A 11 79.69 -113.12 REMARK 500 7 ASP B 142 70.47 -115.26 REMARK 500 7 LYS B 213 61.48 65.11 REMARK 500 8 ASN A 48 141.08 68.75 REMARK 500 8 VAL A 49 -60.16 -128.31 REMARK 500 8 ARG A 50 -67.55 59.10 REMARK 500 9 VAL A 49 76.38 46.18 REMARK 500 9 ASP B 142 63.05 -118.08 REMARK 500 9 PRO B 204 91.13 -69.67 REMARK 500 9 LEU B 237 75.40 -102.98 REMARK 500 10 GLN A 11 79.97 -117.74 REMARK 500 10 ASP B 142 40.62 -104.55 REMARK 500 10 GLU B 251 -78.20 56.63 REMARK 500 10 HIS B 252 -53.71 -176.71 REMARK 500 11 GLU B 141 -172.85 62.07 REMARK 500 11 ASP B 142 56.94 -98.42 REMARK 500 11 ASN B 236 5.18 -63.18 REMARK 500 12 MET A 1 79.76 -115.10 REMARK 500 12 ASN A 48 143.06 74.44 REMARK 500 12 GLU B 141 -177.62 62.66 REMARK 500 12 ASP B 142 88.75 60.54 REMARK 500 12 PRO B 204 90.78 -69.22 REMARK 500 12 ASN B 236 14.09 -69.86 REMARK 500 13 MET A 1 38.32 -150.82 REMARK 500 13 TYR A 47 -86.68 -75.81 REMARK 500 13 ASN A 48 151.41 175.85 REMARK 500 13 VAL A 49 -64.82 -93.75 REMARK 500 13 ARG A 50 125.79 65.82 REMARK 500 REMARK 500 THIS ENTRY HAS 89 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 2 ARG A 30 0.10 SIDE CHAIN REMARK 500 3 ARG A 30 0.07 SIDE CHAIN REMARK 500 5 ARG B 182 0.08 SIDE CHAIN REMARK 500 9 ARG A 30 0.10 SIDE CHAIN REMARK 500 9 ARG B 182 0.08 SIDE CHAIN REMARK 500 10 ARG B 182 0.08 SIDE CHAIN REMARK 500 11 ARG B 174 0.09 SIDE CHAIN REMARK 500 11 ARG B 242 0.11 SIDE CHAIN REMARK 500 12 ARG A 30 0.09 SIDE CHAIN REMARK 500 13 ARG A 28 0.08 SIDE CHAIN REMARK 500 15 ARG B 234 0.08 SIDE CHAIN REMARK 500 17 ARG A 30 0.11 SIDE CHAIN REMARK 500 18 ARG B 182 0.09 SIDE CHAIN REMARK 500 19 ARG B 182 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6IVS RELATED DB: PDB REMARK 900 FREE RSGI1N REMARK 900 RELATED ID: 36221 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF THE SIGMA-ANTI-SIGMA FACTOR COMPLEX RSGI1N- REMARK 900 SIGI1C FROM CLOSTRIDIUM THERMOCELLUM DBREF 6IVU A 1 52 UNP A3DBH1 RSGI1_CLOTH 1 52 DBREF 6IVU B 141 249 UNP A3DBH0 SIGI1_CLOTH 141 249 SEQADV 6IVU SER A 0 UNP A3DBH1 EXPRESSION TAG SEQADV 6IVU MET B 140 UNP A3DBH0 INITIATING METHIONINE SEQADV 6IVU LEU B 250 UNP A3DBH0 EXPRESSION TAG SEQADV 6IVU GLU B 251 UNP A3DBH0 EXPRESSION TAG SEQADV 6IVU HIS B 252 UNP A3DBH0 EXPRESSION TAG SEQADV 6IVU HIS B 253 UNP A3DBH0 EXPRESSION TAG SEQADV 6IVU HIS B 254 UNP A3DBH0 EXPRESSION TAG SEQADV 6IVU HIS B 255 UNP A3DBH0 EXPRESSION TAG SEQADV 6IVU HIS B 256 UNP A3DBH0 EXPRESSION TAG SEQADV 6IVU HIS B 257 UNP A3DBH0 EXPRESSION TAG SEQRES 1 A 53 SER MET ASN ARG LEU GLY ILE ILE TYR GLU ILE GLN GLY SEQRES 2 A 53 MET LYS ALA VAL VAL LEU THR SER GLU GLY GLU PHE LEU SEQRES 3 A 53 ILE ILE ARG ARG ARG LYS ASP MET LYS VAL GLY GLN GLN SEQRES 4 A 53 VAL SER PHE GLU ASN GLU ASP ILE TYR ASN VAL ARG GLY SEQRES 5 A 53 LYS SEQRES 1 B 118 MET GLU ASP ILE GLU ALA ARG GLU ASP ILE GLU GLU LEU SEQRES 2 B 118 LYS LYS LYS LEU GLN GLU PHE GLY ILE THR PHE LEU ASP SEQRES 3 B 118 LEU VAL LEU ASN VAL PRO LYS HIS ARG ASP SER ARG GLN SEQRES 4 B 118 LEU CYS ILE ARG LEU ALA LYS MET LEU ALA GLU ASP GLU SEQRES 5 B 118 GLN MET TYR ASN ALA LEU MET LYS ASN LYS ASN ILE PRO SEQRES 6 B 118 ARG ASN GLU LEU LYS LYS LYS ALA LYS VAL HIS GLY ARG SEQRES 7 B 118 THR ILE GLY ASN ASN ARG LYS TYR ILE ILE ALA LEU CYS SEQRES 8 B 118 LEU ILE PHE ARG SER ASN LEU ASN LEU SER LYS ARG TYR SEQRES 9 B 118 LEU GLU TYR TYR THR MET LEU GLU HIS HIS HIS HIS HIS SEQRES 10 B 118 HIS HELIX 1 AA1 GLU A 44 ILE A 46 5 3 HELIX 2 AA2 ALA B 145 GLY B 160 1 16 HELIX 3 AA3 THR B 162 ASN B 169 1 8 HELIX 4 AA4 HIS B 173 ASP B 190 1 18 HELIX 5 AA5 ASP B 190 LYS B 201 1 12 HELIX 6 AA6 PRO B 204 LYS B 213 1 10 HELIX 7 AA7 HIS B 215 ASN B 222 1 8 HELIX 8 AA8 ASN B 222 SER B 235 1 14 HELIX 9 AA9 LEU B 237 MET B 249 1 13 HELIX 10 AB1 LEU B 250 HIS B 252 5 3 SHEET 1 AA1 4 PHE A 24 ARG A 28 0 SHEET 2 AA1 4 LYS A 14 LEU A 18 -1 N VAL A 17 O LEU A 25 SHEET 3 AA1 4 ASN A 2 GLN A 11 -1 N GLN A 11 O LYS A 14 SHEET 4 AA1 4 GLN A 38 GLU A 42 -1 O VAL A 39 N GLY A 5 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1