HEADER STRUCTURAL PROTEIN 08-DEC-18 6IWY TITLE CRYSTAL STRUCTURE OF THE FLAGELLAR CAP PROTEIN FLID FROM HELICOBACTER TITLE 2 PYLORI COMPND MOL_ID: 1; COMPND 2 MOLECULE: FLAGELLAR HOOK-ASSOCIATED PROTEIN 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HAP2,FILAMENT CAP PROTEIN,FLAGELLAR CAP PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI (STRAIN ATCC 700392 / SOURCE 3 26695); SOURCE 4 ORGANISM_COMMON: CAMPYLOBACTER PYLORI; SOURCE 5 ORGANISM_TAXID: 85962; SOURCE 6 STRAIN: ATCC 700392 / 26695; SOURCE 7 GENE: FLID, HP_0752; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS BACTERIAL FLAGELLAR CAP PROTEIN, STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.Y.CHO,W.S.SONG,S.I.YOON REVDAT 3 27-MAR-24 6IWY 1 REMARK REVDAT 2 29-MAY-19 6IWY 1 JRNL REVDAT 1 22-MAY-19 6IWY 0 JRNL AUTH S.Y.CHO,W.S.SONG,H.B.OH,H.U.KIM,H.S.JUNG,S.I.YOON JRNL TITL STRUCTURAL ANALYSIS OF THE FLAGELLAR CAPPING PROTEIN FLID JRNL TITL 2 FROM HELICOBACTER PYLORI. JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 514 98 2019 JRNL REFN ESSN 1090-2104 JRNL PMID 31023530 JRNL DOI 10.1016/J.BBRC.2019.04.065 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 16328 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.242 REMARK 3 R VALUE (WORKING SET) : 0.240 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 865 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.61 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1078 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.67 REMARK 3 BIN R VALUE (WORKING SET) : 0.3870 REMARK 3 BIN FREE R VALUE SET COUNT : 56 REMARK 3 BIN FREE R VALUE : 0.4930 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2637 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 4 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.59000 REMARK 3 B22 (A**2) : -0.08000 REMARK 3 B33 (A**2) : -0.51000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.433 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.297 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.262 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 27.319 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.920 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.899 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2657 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1671 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3594 ; 1.545 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4153 ; 0.888 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 361 ; 7.077 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 106 ;40.582 ;27.358 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 448 ;18.504 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 5 ;21.759 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 437 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3020 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 449 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1799 ; 0.521 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 757 ; 0.100 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2847 ; 0.996 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 858 ; 1.946 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 747 ; 3.327 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 80 A 106 REMARK 3 RESIDUE RANGE : A 435 A 476 REMARK 3 ORIGIN FOR THE GROUP (A): 10.3770 65.4350 17.0690 REMARK 3 T TENSOR REMARK 3 T11: 0.1748 T22: 0.7419 REMARK 3 T33: 0.9249 T12: -0.0112 REMARK 3 T13: 0.0309 T23: -0.2724 REMARK 3 L TENSOR REMARK 3 L11: 3.7862 L22: 6.4951 REMARK 3 L33: 27.2303 L12: -2.8004 REMARK 3 L13: 3.4152 L23: -5.1693 REMARK 3 S TENSOR REMARK 3 S11: -0.2326 S12: 0.8067 S13: 0.5242 REMARK 3 S21: -0.3680 S22: -0.3825 S23: 0.0516 REMARK 3 S31: -0.6368 S32: -0.0877 S33: 0.6151 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 107 A 196 REMARK 3 RESIDUE RANGE : A 417 A 434 REMARK 3 ORIGIN FOR THE GROUP (A): 22.8550 54.9330 44.3310 REMARK 3 T TENSOR REMARK 3 T11: 0.2842 T22: 0.1794 REMARK 3 T33: 0.7215 T12: -0.0733 REMARK 3 T13: 0.3774 T23: -0.0828 REMARK 3 L TENSOR REMARK 3 L11: 2.8440 L22: 1.8136 REMARK 3 L33: 5.1039 L12: 0.1625 REMARK 3 L13: -0.3593 L23: -0.6888 REMARK 3 S TENSOR REMARK 3 S11: -0.3927 S12: 0.0298 S13: -0.3804 REMARK 3 S21: 0.0135 S22: -0.3766 S23: 0.1179 REMARK 3 S31: 0.7451 S32: -0.1221 S33: 0.7693 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 197 A 317 REMARK 3 ORIGIN FOR THE GROUP (A): 13.2880 78.6090 50.4370 REMARK 3 T TENSOR REMARK 3 T11: 0.1456 T22: 0.2048 REMARK 3 T33: 0.4585 T12: -0.0396 REMARK 3 T13: -0.0118 T23: -0.0809 REMARK 3 L TENSOR REMARK 3 L11: 4.3739 L22: 5.4129 REMARK 3 L33: 3.3968 L12: -0.9701 REMARK 3 L13: -1.0068 L23: 1.4623 REMARK 3 S TENSOR REMARK 3 S11: -0.1813 S12: 0.3312 S13: 0.0110 REMARK 3 S21: -0.3222 S22: -0.0913 S23: 0.1816 REMARK 3 S31: -0.1912 S32: -0.2468 S33: 0.2726 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 318 A 416 REMARK 3 ORIGIN FOR THE GROUP (A): 16.7160 48.0910 71.8330 REMARK 3 T TENSOR REMARK 3 T11: 0.2249 T22: 0.1149 REMARK 3 T33: 0.3379 T12: 0.0575 REMARK 3 T13: -0.0223 T23: -0.0084 REMARK 3 L TENSOR REMARK 3 L11: 4.9775 L22: 17.8506 REMARK 3 L33: 5.9871 L12: -3.4428 REMARK 3 L13: -1.5664 L23: 2.5204 REMARK 3 S TENSOR REMARK 3 S11: -0.0585 S12: -0.2519 S13: -0.2300 REMARK 3 S21: 0.7062 S22: 0.2178 S23: 0.0005 REMARK 3 S31: 0.1283 S32: 0.1290 S33: -0.1593 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6IWY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-DEC-18. REMARK 100 THE DEPOSITION ID IS D_1300010090. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5-6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00004 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17286 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 34.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.51700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6 M AMMONIUM SULFATE, 0.1 M SODIUM REMARK 280 CITRATE, PH 5-6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.54800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 66.54800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 54.51000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 66.54800 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 69 REMARK 465 SER A 70 REMARK 465 ALA A 71 REMARK 465 LYS A 72 REMARK 465 ASP A 73 REMARK 465 PRO A 74 REMARK 465 SER A 75 REMARK 465 ARG A 76 REMARK 465 LYS A 77 REMARK 465 SER A 78 REMARK 465 ASN A 79 REMARK 465 VAL A 89 REMARK 465 GLY A 90 REMARK 465 VAL A 91 REMARK 465 GLY A 92 REMARK 465 VAL A 93 REMARK 465 PRO A 94 REMARK 465 ILE A 95 REMARK 465 GLN A 96 REMARK 465 ASP A 344 REMARK 465 LEU A 345 REMARK 465 SER A 346 REMARK 465 ALA A 347 REMARK 465 LEU A 348 REMARK 465 THR A 349 REMARK 465 LYS A 350 REMARK 465 GLU A 351 REMARK 465 SER A 352 REMARK 465 ASN A 353 REMARK 465 THR A 354 REMARK 465 SER A 355 REMARK 465 GLU A 356 REMARK 465 GLU A 357 REMARK 465 ASN A 441 REMARK 465 GLY A 442 REMARK 465 VAL A 443 REMARK 465 SER A 444 REMARK 465 ASP A 454 REMARK 465 VAL A 455 REMARK 465 ILE A 456 REMARK 465 SER A 457 REMARK 465 GLY A 458 REMARK 465 VAL A 477 REMARK 465 SER A 478 REMARK 465 ARG A 479 REMARK 465 ASP A 480 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 80 CG1 CG2 REMARK 470 SER A 88 OG REMARK 470 LYS A 99 CG CD CE NZ REMARK 470 ASP A 101 CG OD1 OD2 REMARK 470 ARG A 120 NE CZ NH1 NH2 REMARK 470 GLN A 136 CG CD OE1 NE2 REMARK 470 LYS A 206 CG CD CE NZ REMARK 470 ASP A 214 CG OD1 OD2 REMARK 470 SER A 216 OG REMARK 470 LYS A 218 CG CD CE NZ REMARK 470 GLU A 240 CG CD OE1 OE2 REMARK 470 SER A 244 OG REMARK 470 LYS A 248 CE NZ REMARK 470 LYS A 256 CG CD CE NZ REMARK 470 LYS A 269 CG CD CE NZ REMARK 470 GLU A 286 CG CD OE1 OE2 REMARK 470 LYS A 306 CG CD CE NZ REMARK 470 LEU A 311 CG CD1 CD2 REMARK 470 GLN A 316 CG CD OE1 NE2 REMARK 470 ASP A 319 CG OD1 OD2 REMARK 470 GLU A 329 CG CD OE1 OE2 REMARK 470 GLU A 333 CG CD OE1 OE2 REMARK 470 LYS A 342 CG CD CE NZ REMARK 470 ASN A 358 CG OD1 ND2 REMARK 470 GLU A 370 CG CD OE1 OE2 REMARK 470 LYS A 376 CD CE NZ REMARK 470 LYS A 387 CG CD CE NZ REMARK 470 LYS A 394 CG CD CE NZ REMARK 470 ILE A 445 CG1 CG2 CD1 REMARK 470 VAL A 459 CG1 CG2 REMARK 470 ASN A 470 CG OD1 ND2 REMARK 470 LYS A 471 CG CD CE NZ REMARK 470 SER A 476 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 172 -140.50 -132.06 REMARK 500 LEU A 239 116.18 -170.31 REMARK 500 ASN A 339 53.63 39.77 REMARK 500 LYS A 471 69.28 -156.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 358 THR A 359 142.03 REMARK 500 REMARK 500 REMARK: NULL DBREF 6IWY A 75 480 UNP P96786 FLID_HELPY 75 480 SEQADV 6IWY GLY A 69 UNP P96786 EXPRESSION TAG SEQADV 6IWY SER A 70 UNP P96786 EXPRESSION TAG SEQADV 6IWY ALA A 71 UNP P96786 EXPRESSION TAG SEQADV 6IWY LYS A 72 UNP P96786 EXPRESSION TAG SEQADV 6IWY ASP A 73 UNP P96786 EXPRESSION TAG SEQADV 6IWY PRO A 74 UNP P96786 EXPRESSION TAG SEQRES 1 A 412 GLY SER ALA LYS ASP PRO SER ARG LYS SER ASN VAL THR SEQRES 2 A 412 GLY ASP ALA LEU SER ALA SER VAL GLY VAL GLY VAL PRO SEQRES 3 A 412 ILE GLN ASP ILE LYS VAL ASP VAL GLN ASN LEU ALA GLN SEQRES 4 A 412 GLY ASP ILE ASN GLU LEU GLY ALA LYS PHE SER SER ARG SEQRES 5 A 412 ASP ASP ILE PHE SER GLN VAL ASP THR THR LEU LYS PHE SEQRES 6 A 412 TYR THR GLN ASN LYS ASP TYR ALA VAL ASN ILE LYS ALA SEQRES 7 A 412 GLY MET THR LEU GLY ASP VAL ALA GLN SER ILE THR ASP SEQRES 8 A 412 ALA THR ASN GLY GLU VAL MET GLY ILE VAL MET LYS THR SEQRES 9 A 412 GLY GLY ASN ASP PRO TYR GLN LEU MET VAL ASN THR LYS SEQRES 10 A 412 ASN THR GLY GLU ASP ASN ARG VAL TYR PHE GLY SER HIS SEQRES 11 A 412 LEU GLN SER THR LEU THR ASN LYS ASN ALA LEU SER LEU SEQRES 12 A 412 GLY VAL ASP GLY SER GLY LYS SER GLU VAL SER LEU ASN SEQRES 13 A 412 LEU LYS GLY ALA ASP GLY ASN MET HIS GLU VAL PRO ILE SEQRES 14 A 412 MET LEU GLU LEU PRO GLU SER ALA SER ILE LYS GLN LYS SEQRES 15 A 412 ASN THR ALA ILE GLN LYS ALA MET GLU GLN ALA LEU GLU SEQRES 16 A 412 ASN ASP PRO ASN PHE LYS ASN LEU ILE ALA ASN GLY ASP SEQRES 17 A 412 ILE SER ILE ASP THR LEU HIS GLY GLY GLU SER LEU ILE SEQRES 18 A 412 ILE ASN ASP ARG ARG GLY GLY ASN ILE GLU VAL LYS GLY SEQRES 19 A 412 SER LYS ALA LYS GLU LEU GLY PHE LEU GLN THR THR THR SEQRES 20 A 412 GLN GLU SER ASP LEU LEU LYS SER SER ARG THR ILE LYS SEQRES 21 A 412 GLU GLY LYS LEU GLU GLY VAL VAL SER LEU ASN GLY GLN SEQRES 22 A 412 LYS LEU ASP LEU SER ALA LEU THR LYS GLU SER ASN THR SEQRES 23 A 412 SER GLU GLU ASN THR ASP ALA ILE ILE GLN ALA ILE ASN SEQRES 24 A 412 ALA LYS GLU GLY LEU SER ALA PHE LYS ASN ALA GLU GLY SEQRES 25 A 412 LYS LEU VAL ILE ASN SER LYS THR GLY MET LEU THR ILE SEQRES 26 A 412 LYS GLY GLU ASP ALA LEU GLY LYS ALA SER LEU LYS ASP SEQRES 27 A 412 LEU GLY LEU ASN ALA GLY MET VAL GLN SER TYR GLU ALA SEQRES 28 A 412 SER GLN ASN THR LEU PHE MET SER LYS ASN LEU GLN LYS SEQRES 29 A 412 ALA SER ASP SER ALA PHE THR TYR ASN GLY VAL SER ILE SEQRES 30 A 412 THR ARG PRO THR ASN GLU VAL ASN ASP VAL ILE SER GLY SEQRES 31 A 412 VAL ASN ILE THR LEU GLU GLN THR THR GLU PRO ASN LYS SEQRES 32 A 412 PRO ALA ILE ILE SER VAL SER ARG ASP FORMUL 2 HOH *4(H2 O) HELIX 1 AA1 THR A 149 THR A 161 1 13 HELIX 2 AA2 GLY A 188 ARG A 192 5 5 HELIX 3 AA3 SER A 246 ASP A 265 1 20 HELIX 4 AA4 PHE A 268 ASN A 274 1 7 HELIX 5 AA5 HIS A 283 GLU A 286 5 4 HELIX 6 AA6 LYS A 304 GLY A 309 5 6 HELIX 7 AA7 THR A 359 ALA A 368 1 10 HELIX 8 AA8 ASP A 397 LEU A 404 1 8 HELIX 9 AA9 LYS A 405 GLY A 408 5 4 HELIX 10 AB1 SER A 416 PHE A 425 1 10 SHEET 1 AA1 2 LEU A 85 SER A 88 0 SHEET 2 AA1 2 ASN A 460 LEU A 463 -1 O ASN A 460 N SER A 88 SHEET 1 AA2 4 THR A 446 ARG A 447 0 SHEET 2 AA2 4 SER A 436 THR A 439 -1 N SER A 436 O ARG A 447 SHEET 3 AA2 4 ILE A 98 ASN A 104 -1 N ASN A 104 O ALA A 437 SHEET 4 AA2 4 ALA A 473 ILE A 475 -1 O ILE A 475 N ILE A 98 SHEET 1 AA3 4 VAL A 165 LYS A 171 0 SHEET 2 AA3 4 TYR A 178 THR A 184 -1 O MET A 181 N ILE A 168 SHEET 3 AA3 4 ILE A 110 PHE A 117 -1 N PHE A 117 O TYR A 178 SHEET 4 AA3 4 SER A 427 GLN A 431 -1 O LEU A 430 N ILE A 110 SHEET 1 AA4 3 LYS A 138 ILE A 144 0 SHEET 2 AA4 3 THR A 129 THR A 135 -1 N THR A 129 O ILE A 144 SHEET 3 AA4 3 TYR A 194 PHE A 195 -1 O TYR A 194 N TYR A 134 SHEET 1 AA5 3 SER A 197 GLN A 200 0 SHEET 2 AA5 3 SER A 287 ASP A 292 -1 O ILE A 290 N LEU A 199 SHEET 3 AA5 3 ILE A 277 LEU A 282 -1 N LEU A 282 O SER A 287 SHEET 1 AA6 2 LEU A 209 LEU A 211 0 SHEET 2 AA6 2 LEU A 239 LEU A 241 -1 O LEU A 239 N LEU A 211 SHEET 1 AA7 3 MET A 232 PRO A 236 0 SHEET 2 AA7 3 SER A 222 LYS A 226 -1 N LEU A 223 O VAL A 235 SHEET 3 AA7 3 ILE A 298 LYS A 301 -1 O GLU A 299 N ASN A 224 SHEET 1 AA8 3 LEU A 321 LYS A 322 0 SHEET 2 AA8 3 LEU A 382 SER A 386 -1 O ILE A 384 N LEU A 321 SHEET 3 AA8 3 LEU A 372 LYS A 376 -1 N SER A 373 O ASN A 385 SHEET 1 AA9 4 GLN A 341 LYS A 342 0 SHEET 2 AA9 4 VAL A 336 LEU A 338 -1 N LEU A 338 O GLN A 341 SHEET 3 AA9 4 MET A 390 GLY A 395 -1 O LYS A 394 N SER A 337 SHEET 4 AA9 4 GLY A 412 GLN A 415 -1 O GLY A 412 N ILE A 393 CRYST1 54.510 75.891 133.096 90.00 90.00 90.00 P 2 2 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018345 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013177 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007513 0.00000