HEADER STRUCTURAL PROTEIN 12-DEC-18 6IXW TITLE PCBH PARM NON-POLYMERISABLE QUADRUPLE MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: PCBH PARM; COMPND 3 CHAIN: C, B, A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM BOTULINUM PREVOT_594; SOURCE 3 ORGANISM_TAXID: 1408284; SOURCE 4 GENE: T258_3831; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ACTIN PARM, STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR F.KOH,D.POPP,A.NARITA,R.C.ROBINSON REVDAT 3 27-MAR-24 6IXW 1 LINK REVDAT 2 10-JUL-19 6IXW 1 JRNL REVDAT 1 19-JUN-19 6IXW 0 JRNL AUTH F.KOH,A.NARITA,L.J.LEE,K.TANAKA,Y.Z.TAN,V.P.DANDEY,D.POPP, JRNL AUTH 2 R.C.ROBINSON JRNL TITL THE STRUCTURE OF A 15-STRANDED ACTIN-LIKE FILAMENT FROM JRNL TITL 2 CLOSTRIDIUM BOTULINUM. JRNL REF NAT COMMUN V. 10 2856 2019 JRNL REFN ESSN 2041-1723 JRNL PMID 31253774 JRNL DOI 10.1038/S41467-019-10779-9 REMARK 2 REMARK 2 RESOLUTION. 3.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.97 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 19789 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 1012 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.9745 - 6.1699 1.00 2818 167 0.1567 0.2136 REMARK 3 2 6.1699 - 4.9214 1.00 2798 152 0.1591 0.1813 REMARK 3 3 4.9214 - 4.3064 1.00 2743 175 0.1236 0.1835 REMARK 3 4 4.3064 - 3.9159 1.00 2777 148 0.1437 0.2089 REMARK 3 5 3.9159 - 3.6370 0.98 2720 146 0.1688 0.2509 REMARK 3 6 3.6370 - 3.4237 0.93 2652 104 0.1911 0.2839 REMARK 3 7 3.4237 - 3.2530 0.83 2269 120 0.2060 0.2702 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.550 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 61.56 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 60.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6IXW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-DEC-18. REMARK 100 THE DEPOSITION ID IS D_1300010129. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : TPS 05A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20481 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.250 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.14300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.57400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 28% PEG 400 0.1 M HEPES 0.15 M MGCL2 REMARK 280 PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 82.07650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.96100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 82.07650 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 46.96100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY C -1 REMARK 465 PRO C 0 REMARK 465 LEU C 39 REMARK 465 ASP C 40 REMARK 465 THR C 41 REMARK 465 ASP C 42 REMARK 465 PHE C 43 REMARK 465 ASN C 44 REMARK 465 SER C 45 REMARK 465 LYS C 350 REMARK 465 GLY B -1 REMARK 465 PRO B 0 REMARK 465 MET B 1 REMARK 465 LEU B 39 REMARK 465 ASP B 40 REMARK 465 THR B 41 REMARK 465 ASP B 42 REMARK 465 PHE B 43 REMARK 465 ASN B 44 REMARK 465 SER B 45 REMARK 465 LYS B 350 REMARK 465 GLY A -1 REMARK 465 PRO A 0 REMARK 465 MET A 1 REMARK 465 LEU A 39 REMARK 465 ASP A 40 REMARK 465 THR A 41 REMARK 465 ASP A 42 REMARK 465 PHE A 43 REMARK 465 ASN A 44 REMARK 465 SER A 45 REMARK 465 LYS A 350 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE C 173 ND2 ASN C 179 2.08 REMARK 500 OG1 THR C 144 OD1 ASN C 155 2.12 REMARK 500 OG1 THR C 201 O LEU C 227 2.12 REMARK 500 O GLN C 14 NZ LYS C 16 2.13 REMARK 500 O ARG B 85 NZ LYS B 199 2.18 REMARK 500 OH TYR B 67 OE2 GLU B 92 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS C 328 CA - CB - SG ANGL. DEV. = 11.8 DEGREES REMARK 500 CYS B 328 CA - CB - SG ANGL. DEV. = 7.0 DEGREES REMARK 500 LEU A 10 CA - CB - CG ANGL. DEV. = 16.9 DEGREES REMARK 500 CYS A 328 CA - CB - SG ANGL. DEV. = 8.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN C 52 49.63 -141.70 REMARK 500 ASP C 59 -161.58 -129.37 REMARK 500 ASN C 84 42.44 -100.38 REMARK 500 PRO C 111 175.42 -54.96 REMARK 500 SER C 161 19.88 57.99 REMARK 500 GLU C 324 89.47 -157.50 REMARK 500 GLN B 20 6.65 -67.68 REMARK 500 ASN B 90 53.69 -112.89 REMARK 500 GLU B 142 54.52 -154.31 REMARK 500 HIS B 150 15.11 -148.73 REMARK 500 MET B 220 40.37 -90.59 REMARK 500 ASP B 299 0.17 -68.10 REMARK 500 SER B 302 20.78 -70.53 REMARK 500 ASN A 63 79.70 -112.20 REMARK 500 SER A 80 67.72 -104.27 REMARK 500 SER A 81 157.80 -45.92 REMARK 500 GLU A 142 77.61 -160.99 REMARK 500 SER A 302 37.61 -91.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN C 79 SER C 80 149.99 REMARK 500 SER C 161 ASN C 162 145.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 225 OD1 REMARK 620 2 ASP A 225 OD2 47.6 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP C 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG C 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG C 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 403 DBREF1 6IXW C 1 350 UNP A0A0B4W229_CLOBO DBREF2 6IXW C A0A0B4W229 1 350 DBREF1 6IXW B 1 350 UNP A0A0B4W229_CLOBO DBREF2 6IXW B A0A0B4W229 1 350 DBREF1 6IXW A 1 350 UNP A0A0B4W229_CLOBO DBREF2 6IXW A A0A0B4W229 1 350 SEQADV 6IXW GLY C -1 UNP A0A0B4W22 EXPRESSION TAG SEQADV 6IXW PRO C 0 UNP A0A0B4W22 EXPRESSION TAG SEQADV 6IXW ASP C 42 UNP A0A0B4W22 PHE 42 ENGINEERED MUTATION SEQADV 6IXW ASP C 46 UNP A0A0B4W22 ILE 46 ENGINEERED MUTATION SEQADV 6IXW ASP C 298 UNP A0A0B4W22 SER 298 ENGINEERED MUTATION SEQADV 6IXW ASP C 299 UNP A0A0B4W22 ARG 299 ENGINEERED MUTATION SEQADV 6IXW GLY B -1 UNP A0A0B4W22 EXPRESSION TAG SEQADV 6IXW PRO B 0 UNP A0A0B4W22 EXPRESSION TAG SEQADV 6IXW ASP B 42 UNP A0A0B4W22 PHE 42 ENGINEERED MUTATION SEQADV 6IXW ASP B 46 UNP A0A0B4W22 ILE 46 ENGINEERED MUTATION SEQADV 6IXW ASP B 298 UNP A0A0B4W22 SER 298 ENGINEERED MUTATION SEQADV 6IXW ASP B 299 UNP A0A0B4W22 ARG 299 ENGINEERED MUTATION SEQADV 6IXW GLY A -1 UNP A0A0B4W22 EXPRESSION TAG SEQADV 6IXW PRO A 0 UNP A0A0B4W22 EXPRESSION TAG SEQADV 6IXW ASP A 42 UNP A0A0B4W22 PHE 42 ENGINEERED MUTATION SEQADV 6IXW ASP A 46 UNP A0A0B4W22 ILE 46 ENGINEERED MUTATION SEQADV 6IXW ASP A 298 UNP A0A0B4W22 SER 298 ENGINEERED MUTATION SEQADV 6IXW ASP A 299 UNP A0A0B4W22 ARG 299 ENGINEERED MUTATION SEQRES 1 C 352 GLY PRO MET ASN LYS TYR THR ILE ALA ILE ASP LEU GLY SEQRES 2 C 352 TYR GLY GLN ILE LYS GLY ILE ASN GLN ASP ASN LYS ARG SEQRES 3 C 352 VAL ILE PHE PRO SER ILE ILE SER SER GLY LYS ASP ARG SEQRES 4 C 352 SER LEU ASP THR ASP PHE ASN SER ASP ASP ASN ILE VAL SEQRES 5 C 352 ASP ASN ILE HIS VAL LYS ILE LEU ASP GLU TYR PHE ASN SEQRES 6 C 352 GLU LYS GLU TYR PHE VAL GLY GLU LEU ALA LYS ARG GLN SEQRES 7 C 352 PRO SER ASN SER SER PHE ILE ASN ARG ASP ASN LYS ILE SEQRES 8 C 352 ASN SER GLU GLU ASN LYS VAL LEU LEU ALA THR ALA LEU SEQRES 9 C 352 GLY LEU LEU ILE PRO ASN ASP LEU PRO ASN ASP THR LYS SEQRES 10 C 352 ILE HIS ILE VAL THR GLY LEU PRO LEU GLU HIS PHE ILE SEQRES 11 C 352 LYS GLN LYS GLN ALA LEU ASN ASP MET LEU LYS ASP PHE SEQRES 12 C 352 GLU HIS THR ILE LYS PHE VAL ASP HIS ASN PHE SER ARG SEQRES 13 C 352 ASN ILE LYS PHE GLU GLU SER ASN ILE THR LEU PHE PRO SEQRES 14 C 352 GLN GLY ALA GLY ALA ILE PHE SER LYS ILE ASN ASN ASP SEQRES 15 C 352 ILE SER SER LEU LEU ILE LYS GLU THR PHE ILE GLY LEU SEQRES 16 C 352 ILE ASP VAL GLY PHE LYS THR THR ASP ILE VAL VAL PHE SEQRES 17 C 352 ARG ILE ASN LYS ASP LYS GLU PRO VAL PHE GLU GLN GLU SEQRES 18 C 352 MET SER ALA THR LEU ASP GLY LEU GLY MET ILE ASN ILE SEQRES 19 C 352 TYR ASN THR MET ASP LYS ALA PHE THR ASP ASN SER ARG SEQRES 20 C 352 ASP GLY SER LYS LEU ASN THR GLU GLN LEU MET LEU LEU SEQRES 21 C 352 CYS GLU GLU GLY LYS ILE PHE PHE LYS GLY ASP TYR ILE SEQRES 22 C 352 ASP LEU LYS LYS ASP LEU ILE LYS ALA ARG LYS THR LEU SEQRES 23 C 352 SER THR ASN ILE ILE ASN LYS ALA ASP GLY LEU TRP GLY SEQRES 24 C 352 ASP ASP LYS ASN SER PHE ASN SER ILE MET ILE ALA GLY SEQRES 25 C 352 GLY GLY GLY LYS VAL LEU TYR ASN HIS LEU LYS LEU ILE SEQRES 26 C 352 GLU PRO ASN MET CYS GLN LEU ILE ASP ASN PRO GLU PHE SEQRES 27 C 352 ALA ASN ALA ILE GLY TYR LEU GLU PHE GLY LYS GLN PHE SEQRES 28 C 352 LYS SEQRES 1 B 352 GLY PRO MET ASN LYS TYR THR ILE ALA ILE ASP LEU GLY SEQRES 2 B 352 TYR GLY GLN ILE LYS GLY ILE ASN GLN ASP ASN LYS ARG SEQRES 3 B 352 VAL ILE PHE PRO SER ILE ILE SER SER GLY LYS ASP ARG SEQRES 4 B 352 SER LEU ASP THR ASP PHE ASN SER ASP ASP ASN ILE VAL SEQRES 5 B 352 ASP ASN ILE HIS VAL LYS ILE LEU ASP GLU TYR PHE ASN SEQRES 6 B 352 GLU LYS GLU TYR PHE VAL GLY GLU LEU ALA LYS ARG GLN SEQRES 7 B 352 PRO SER ASN SER SER PHE ILE ASN ARG ASP ASN LYS ILE SEQRES 8 B 352 ASN SER GLU GLU ASN LYS VAL LEU LEU ALA THR ALA LEU SEQRES 9 B 352 GLY LEU LEU ILE PRO ASN ASP LEU PRO ASN ASP THR LYS SEQRES 10 B 352 ILE HIS ILE VAL THR GLY LEU PRO LEU GLU HIS PHE ILE SEQRES 11 B 352 LYS GLN LYS GLN ALA LEU ASN ASP MET LEU LYS ASP PHE SEQRES 12 B 352 GLU HIS THR ILE LYS PHE VAL ASP HIS ASN PHE SER ARG SEQRES 13 B 352 ASN ILE LYS PHE GLU GLU SER ASN ILE THR LEU PHE PRO SEQRES 14 B 352 GLN GLY ALA GLY ALA ILE PHE SER LYS ILE ASN ASN ASP SEQRES 15 B 352 ILE SER SER LEU LEU ILE LYS GLU THR PHE ILE GLY LEU SEQRES 16 B 352 ILE ASP VAL GLY PHE LYS THR THR ASP ILE VAL VAL PHE SEQRES 17 B 352 ARG ILE ASN LYS ASP LYS GLU PRO VAL PHE GLU GLN GLU SEQRES 18 B 352 MET SER ALA THR LEU ASP GLY LEU GLY MET ILE ASN ILE SEQRES 19 B 352 TYR ASN THR MET ASP LYS ALA PHE THR ASP ASN SER ARG SEQRES 20 B 352 ASP GLY SER LYS LEU ASN THR GLU GLN LEU MET LEU LEU SEQRES 21 B 352 CYS GLU GLU GLY LYS ILE PHE PHE LYS GLY ASP TYR ILE SEQRES 22 B 352 ASP LEU LYS LYS ASP LEU ILE LYS ALA ARG LYS THR LEU SEQRES 23 B 352 SER THR ASN ILE ILE ASN LYS ALA ASP GLY LEU TRP GLY SEQRES 24 B 352 ASP ASP LYS ASN SER PHE ASN SER ILE MET ILE ALA GLY SEQRES 25 B 352 GLY GLY GLY LYS VAL LEU TYR ASN HIS LEU LYS LEU ILE SEQRES 26 B 352 GLU PRO ASN MET CYS GLN LEU ILE ASP ASN PRO GLU PHE SEQRES 27 B 352 ALA ASN ALA ILE GLY TYR LEU GLU PHE GLY LYS GLN PHE SEQRES 28 B 352 LYS SEQRES 1 A 352 GLY PRO MET ASN LYS TYR THR ILE ALA ILE ASP LEU GLY SEQRES 2 A 352 TYR GLY GLN ILE LYS GLY ILE ASN GLN ASP ASN LYS ARG SEQRES 3 A 352 VAL ILE PHE PRO SER ILE ILE SER SER GLY LYS ASP ARG SEQRES 4 A 352 SER LEU ASP THR ASP PHE ASN SER ASP ASP ASN ILE VAL SEQRES 5 A 352 ASP ASN ILE HIS VAL LYS ILE LEU ASP GLU TYR PHE ASN SEQRES 6 A 352 GLU LYS GLU TYR PHE VAL GLY GLU LEU ALA LYS ARG GLN SEQRES 7 A 352 PRO SER ASN SER SER PHE ILE ASN ARG ASP ASN LYS ILE SEQRES 8 A 352 ASN SER GLU GLU ASN LYS VAL LEU LEU ALA THR ALA LEU SEQRES 9 A 352 GLY LEU LEU ILE PRO ASN ASP LEU PRO ASN ASP THR LYS SEQRES 10 A 352 ILE HIS ILE VAL THR GLY LEU PRO LEU GLU HIS PHE ILE SEQRES 11 A 352 LYS GLN LYS GLN ALA LEU ASN ASP MET LEU LYS ASP PHE SEQRES 12 A 352 GLU HIS THR ILE LYS PHE VAL ASP HIS ASN PHE SER ARG SEQRES 13 A 352 ASN ILE LYS PHE GLU GLU SER ASN ILE THR LEU PHE PRO SEQRES 14 A 352 GLN GLY ALA GLY ALA ILE PHE SER LYS ILE ASN ASN ASP SEQRES 15 A 352 ILE SER SER LEU LEU ILE LYS GLU THR PHE ILE GLY LEU SEQRES 16 A 352 ILE ASP VAL GLY PHE LYS THR THR ASP ILE VAL VAL PHE SEQRES 17 A 352 ARG ILE ASN LYS ASP LYS GLU PRO VAL PHE GLU GLN GLU SEQRES 18 A 352 MET SER ALA THR LEU ASP GLY LEU GLY MET ILE ASN ILE SEQRES 19 A 352 TYR ASN THR MET ASP LYS ALA PHE THR ASP ASN SER ARG SEQRES 20 A 352 ASP GLY SER LYS LEU ASN THR GLU GLN LEU MET LEU LEU SEQRES 21 A 352 CYS GLU GLU GLY LYS ILE PHE PHE LYS GLY ASP TYR ILE SEQRES 22 A 352 ASP LEU LYS LYS ASP LEU ILE LYS ALA ARG LYS THR LEU SEQRES 23 A 352 SER THR ASN ILE ILE ASN LYS ALA ASP GLY LEU TRP GLY SEQRES 24 A 352 ASP ASP LYS ASN SER PHE ASN SER ILE MET ILE ALA GLY SEQRES 25 A 352 GLY GLY GLY LYS VAL LEU TYR ASN HIS LEU LYS LEU ILE SEQRES 26 A 352 GLU PRO ASN MET CYS GLN LEU ILE ASP ASN PRO GLU PHE SEQRES 27 A 352 ALA ASN ALA ILE GLY TYR LEU GLU PHE GLY LYS GLN PHE SEQRES 28 A 352 LYS HET ADP C 401 27 HET MG C 402 1 HET MG C 403 1 HET ADP B 401 27 HET MG B 402 1 HET ADP A 401 27 HET MG A 402 1 HET MG A 403 1 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 4 ADP 3(C10 H15 N5 O10 P2) FORMUL 5 MG 5(MG 2+) HELIX 1 AA1 ASN C 48 ASN C 52 5 5 HELIX 2 AA2 GLY C 70 ARG C 75 1 6 HELIX 3 AA3 SER C 91 ILE C 106 1 16 HELIX 4 AA4 GLU C 125 ASP C 140 1 16 HELIX 5 AA5 ASP C 149 ASN C 151 5 3 HELIX 6 AA6 GLY C 169 SER C 175 1 7 HELIX 7 AA7 ASP C 180 LEU C 185 1 6 HELIX 8 AA8 GLN C 218 SER C 221 5 4 HELIX 9 AA9 MET C 229 ARG C 245 1 17 HELIX 10 AB1 ASN C 251 GLU C 261 1 11 HELIX 11 AB2 LEU C 273 TRP C 296 1 24 HELIX 12 AB3 GLY C 297 ASN C 301 5 5 HELIX 13 AB4 GLY C 310 LYS C 321 1 12 HELIX 14 AB5 LEU C 322 GLU C 324 5 3 HELIX 15 AB6 PHE C 336 GLN C 348 1 13 HELIX 16 AB7 ASN B 48 ASN B 52 5 5 HELIX 17 AB8 GLY B 70 ARG B 75 1 6 HELIX 18 AB9 SER B 91 ILE B 106 1 16 HELIX 19 AC1 GLU B 125 ASP B 140 1 16 HELIX 20 AC2 ASP B 149 ASN B 151 5 3 HELIX 21 AC3 GLU B 159 SER B 161 5 3 HELIX 22 AC4 GLY B 169 PHE B 174 1 6 HELIX 23 AC5 ASP B 180 LEU B 185 1 6 HELIX 24 AC6 MET B 229 SER B 244 1 16 HELIX 25 AC7 ASN B 251 GLY B 262 1 12 HELIX 26 AC8 LEU B 273 TRP B 296 1 24 HELIX 27 AC9 GLY B 297 ASN B 301 5 5 HELIX 28 AD1 GLY B 310 LYS B 321 1 12 HELIX 29 AD2 PHE B 336 LYS B 347 1 12 HELIX 30 AD3 ASN A 48 ASN A 52 5 5 HELIX 31 AD4 GLY A 70 ARG A 75 1 6 HELIX 32 AD5 SER A 91 ILE A 106 1 16 HELIX 33 AD6 PRO A 123 GLU A 125 5 3 HELIX 34 AD7 HIS A 126 ASP A 140 1 15 HELIX 35 AD8 ASP A 149 ASN A 151 5 3 HELIX 36 AD9 GLU A 159 SER A 161 5 3 HELIX 37 AE1 GLY A 169 SER A 175 1 7 HELIX 38 AE2 ASP A 180 LEU A 185 5 6 HELIX 39 AE3 GLN A 218 SER A 221 5 4 HELIX 40 AE4 GLY A 228 SER A 244 1 17 HELIX 41 AE5 ASN A 251 GLY A 262 1 12 HELIX 42 AE6 LEU A 273 TRP A 296 1 24 HELIX 43 AE7 GLY A 297 ASN A 301 5 5 HELIX 44 AE8 GLY A 310 LYS A 321 1 12 HELIX 45 AE9 LEU A 322 GLU A 324 5 3 HELIX 46 AF1 PHE A 336 GLN A 348 1 13 SHEET 1 AA1 5 LYS C 23 PRO C 28 0 SHEET 2 AA1 5 GLN C 14 ASN C 19 -1 N GLY C 17 O VAL C 25 SHEET 3 AA1 5 LYS C 3 ASP C 9 -1 N ALA C 7 O ILE C 18 SHEET 4 AA1 5 LYS C 115 THR C 120 1 O HIS C 117 N TYR C 4 SHEET 5 AA1 5 ILE C 163 LEU C 165 1 O THR C 164 N ILE C 118 SHEET 1 AA2 5 ILE C 31 SER C 33 0 SHEET 2 AA2 5 GLU C 64 VAL C 69 -1 O PHE C 68 N SER C 32 SHEET 3 AA2 5 ILE C 53 LEU C 58 -1 N VAL C 55 O TYR C 67 SHEET 4 AA2 5 GLU C 142 PHE C 147 -1 O LYS C 146 N LYS C 56 SHEET 5 AA2 5 PHE C 152 LYS C 157 -1 O ARG C 154 N ILE C 145 SHEET 1 AA3 3 PRO C 214 PHE C 216 0 SHEET 2 AA3 3 THR C 201 ILE C 208 -1 N ARG C 207 O VAL C 215 SHEET 3 AA3 3 ALA C 222 LEU C 224 -1 O LEU C 224 N THR C 201 SHEET 1 AA4 5 PRO C 214 PHE C 216 0 SHEET 2 AA4 5 THR C 201 ILE C 208 -1 N ARG C 207 O VAL C 215 SHEET 3 AA4 5 PHE C 190 VAL C 196 -1 N ASP C 195 O ASP C 202 SHEET 4 AA4 5 PHE C 303 ALA C 309 1 O ALA C 309 N ILE C 194 SHEET 5 AA4 5 CYS C 328 LEU C 330 1 O GLN C 329 N ILE C 308 SHEET 1 AA5 2 LYS C 263 PHE C 266 0 SHEET 2 AA5 2 ASP C 269 ASP C 272 -1 O ILE C 271 N ILE C 264 SHEET 1 AA6 5 ARG B 24 PRO B 28 0 SHEET 2 AA6 5 GLN B 14 ASN B 19 -1 N ILE B 15 O PHE B 27 SHEET 3 AA6 5 LYS B 3 LEU B 10 -1 N ALA B 7 O ILE B 18 SHEET 4 AA6 5 LYS B 115 THR B 120 1 O HIS B 117 N ILE B 6 SHEET 5 AA6 5 ILE B 163 LEU B 165 1 O THR B 164 N ILE B 118 SHEET 1 AA7 5 ILE B 31 SER B 33 0 SHEET 2 AA7 5 LYS B 65 VAL B 69 -1 O PHE B 68 N SER B 32 SHEET 3 AA7 5 ILE B 53 LEU B 58 -1 N VAL B 55 O TYR B 67 SHEET 4 AA7 5 GLU B 142 PHE B 147 -1 O LYS B 146 N LYS B 56 SHEET 5 AA7 5 PHE B 152 LYS B 157 -1 O ILE B 156 N HIS B 143 SHEET 1 AA8 3 GLU B 213 PHE B 216 0 SHEET 2 AA8 3 THR B 201 ASN B 209 -1 N ARG B 207 O VAL B 215 SHEET 3 AA8 3 ALA B 222 LEU B 224 -1 O ALA B 222 N ILE B 203 SHEET 1 AA9 5 GLU B 213 PHE B 216 0 SHEET 2 AA9 5 THR B 201 ASN B 209 -1 N ARG B 207 O VAL B 215 SHEET 3 AA9 5 PHE B 190 VAL B 196 -1 N LEU B 193 O VAL B 204 SHEET 4 AA9 5 PHE B 303 ALA B 309 1 O ALA B 309 N ILE B 194 SHEET 5 AA9 5 CYS B 328 LEU B 330 1 O GLN B 329 N ILE B 308 SHEET 1 AB1 2 LYS B 263 PHE B 266 0 SHEET 2 AB1 2 ASP B 269 ASP B 272 -1 O ASP B 269 N PHE B 266 SHEET 1 AB2 5 ARG A 24 PRO A 28 0 SHEET 2 AB2 5 GLN A 14 ASN A 19 -1 N ILE A 15 O PHE A 27 SHEET 3 AB2 5 LYS A 3 LEU A 10 -1 N ASP A 9 O LYS A 16 SHEET 4 AB2 5 LYS A 115 THR A 120 1 O HIS A 117 N TYR A 4 SHEET 5 AB2 5 ILE A 163 LEU A 165 1 O THR A 164 N ILE A 118 SHEET 1 AB3 5 ILE A 31 SER A 33 0 SHEET 2 AB3 5 LYS A 65 VAL A 69 -1 O PHE A 68 N SER A 32 SHEET 3 AB3 5 ILE A 53 LEU A 58 -1 N VAL A 55 O TYR A 67 SHEET 4 AB3 5 GLU A 142 PHE A 147 -1 O LYS A 146 N LYS A 56 SHEET 5 AB3 5 PHE A 152 LYS A 157 -1 O ARG A 154 N ILE A 145 SHEET 1 AB4 3 PRO A 214 PHE A 216 0 SHEET 2 AB4 3 THR A 201 ILE A 208 -1 N ARG A 207 O VAL A 215 SHEET 3 AB4 3 ALA A 222 LEU A 224 -1 O ALA A 222 N ILE A 203 SHEET 1 AB5 5 PRO A 214 PHE A 216 0 SHEET 2 AB5 5 THR A 201 ILE A 208 -1 N ARG A 207 O VAL A 215 SHEET 3 AB5 5 THR A 189 VAL A 196 -1 N THR A 189 O ILE A 208 SHEET 4 AB5 5 PHE A 303 ALA A 309 1 O MET A 307 N GLY A 192 SHEET 5 AB5 5 GLN A 329 LEU A 330 1 O GLN A 329 N ILE A 308 SHEET 1 AB6 2 LYS A 263 PHE A 266 0 SHEET 2 AB6 2 ASP A 269 ASP A 272 -1 O ILE A 271 N ILE A 264 LINK OE1 GLU C 125 MG MG C 403 1555 1555 2.50 LINK O1B ADP C 401 MG MG C 402 1555 1555 2.15 LINK O1B ADP B 401 MG MG B 402 1555 1555 1.91 LINK OD1 ASP A 225 MG MG A 403 1555 1555 2.62 LINK OD2 ASP A 225 MG MG A 403 1555 1555 2.82 LINK O1B ADP A 401 MG MG A 402 1555 1555 2.26 SITE 1 AC1 13 GLY C 11 TYR C 12 GLY C 13 GLN C 14 SITE 2 AC1 13 LYS C 16 GLY C 197 PHE C 198 TYR C 233 SITE 3 AC1 13 GLY C 310 GLY C 311 LYS C 314 VAL C 315 SITE 4 AC1 13 MG C 402 SITE 1 AC2 2 ASP C 195 ADP C 401 SITE 1 AC3 2 GLU C 125 THR C 223 SITE 1 AC4 11 GLY B 11 GLN B 14 LYS B 16 GLY B 197 SITE 2 AC4 11 PHE B 198 TYR B 233 CYS B 259 GLY B 311 SITE 3 AC4 11 LYS B 314 VAL B 315 MG B 402 SITE 1 AC5 3 ASP B 9 ASP B 195 ADP B 401 SITE 1 AC6 13 GLY A 11 GLY A 13 GLN A 14 LYS A 16 SITE 2 AC6 13 GLY A 197 PHE A 198 TYR A 233 GLY A 310 SITE 3 AC6 13 GLY A 311 GLY A 312 LYS A 314 VAL A 315 SITE 4 AC6 13 MG A 402 SITE 1 AC7 2 ASP A 195 ADP A 401 SITE 1 AC8 4 GLU A 125 HIS A 126 THR A 223 ASP A 225 CRYST1 164.153 93.922 114.699 90.00 131.55 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006092 0.000000 0.005399 0.00000 SCALE2 0.000000 0.010647 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011649 0.00000