HEADER TRANSPORT PROTEIN 12-DEC-18 6IY1 TITLE STRUCTURE OF HUMAN RAS-RELATED PROTEIN RAB11 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAS-RELATED PROTEIN RAB-11A; COMPND 3 CHAIN: A, B, C, E; COMPND 4 SYNONYM: RAB-11,YL8; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: RAS-RELATED PROTEIN RAB-11A; COMPND 8 CHAIN: D; COMPND 9 SYNONYM: RAB-11,YL8; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: RAS-RELATED PROTEIN RAB-11A; COMPND 13 CHAIN: F; COMPND 14 SYNONYM: RAB-11,YL8; COMPND 15 ENGINEERED: YES; COMPND 16 OTHER_DETAILS: GDP SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RAB11A, RAB11; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: RAB11A, RAB11; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 17 ORGANISM_COMMON: HUMAN; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 GENE: RAB11A, RAB11; SOURCE 20 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS COMPLEX, TRANSPORT, GTPASE, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.MA,S.LI,J.LI REVDAT 2 22-NOV-23 6IY1 1 REMARK REVDAT 1 18-DEC-19 6IY1 0 JRNL AUTH P.MA,S.LI,J.LI JRNL TITL STRUCTURE OF HUMAN RAS-RELATED PROTEIN RAB11 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.11 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.11 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.73 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 91.1 REMARK 3 NUMBER OF REFLECTIONS : 46212 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2421 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.11 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3073 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 82.20 REMARK 3 BIN R VALUE (WORKING SET) : 0.3420 REMARK 3 BIN FREE R VALUE SET COUNT : 154 REMARK 3 BIN FREE R VALUE : 0.3520 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7841 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 168 REMARK 3 SOLVENT ATOMS : 214 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.01000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.381 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.243 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.915 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8146 ; 0.008 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 11054 ; 1.334 ; 1.667 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 979 ; 5.656 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 448 ;31.946 ;21.518 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1391 ;17.120 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 66 ;16.449 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1096 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6130 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3943 ; 1.774 ; 2.527 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4913 ; 2.969 ; 3.775 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 4203 ; 2.257 ; 2.835 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 12711 ; 5.884 ;34.379 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6IY1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-DEC-18. REMARK 100 THE DEPOSITION ID IS D_1300010108. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-OCT-18 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48648 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.2 REMARK 200 DATA REDUNDANCY : 2.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1OIV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.15M LI2SO4, 0.1M GLYCINE, 0.8M REMARK 280 NAH2PO4 1.2M NA2HPO4, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 75.38100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5, 6 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 6 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU D 7 REMARK 465 GLN D 70 REMARK 465 GLU D 71 REMARK 465 GLN E 70 REMARK 465 GLU E 71 REMARK 465 GLN F 70 REMARK 465 GLU F 71 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU B 128 57.02 -90.06 REMARK 500 SER B 158 7.45 80.68 REMARK 500 ARG C 33 -6.79 -144.84 REMARK 500 LYS C 125 34.87 70.11 REMARK 500 LEU C 128 37.65 -97.51 REMARK 500 ASP D 9 -71.93 -79.18 REMARK 500 LYS D 125 33.74 76.08 REMARK 500 LEU D 128 35.01 -93.69 REMARK 500 SER D 158 -0.97 87.88 REMARK 500 ASP E 56 -133.30 56.63 REMARK 500 LEU E 128 32.01 -95.68 REMARK 500 SER E 158 -0.92 87.53 REMARK 500 GLU F 7 78.09 -114.00 REMARK 500 LYS F 125 33.36 74.91 REMARK 500 LEU F 128 30.58 -96.90 REMARK 500 SER F 158 2.17 83.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP D 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP E 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP F 201 DBREF 6IY1 A 9 173 UNP P62491 RB11A_HUMAN 9 173 DBREF 6IY1 B 9 173 UNP P62491 RB11A_HUMAN 9 173 DBREF 6IY1 C 9 173 UNP P62491 RB11A_HUMAN 9 173 DBREF 6IY1 D 7 173 UNP P62491 RB11A_HUMAN 7 173 DBREF 6IY1 E 9 173 UNP P62491 RB11A_HUMAN 9 173 DBREF 6IY1 F 6 173 UNP P62491 RB11A_HUMAN 6 173 SEQRES 1 A 165 ASP TYR LEU PHE LYS VAL VAL LEU ILE GLY ASP SER GLY SEQRES 2 A 165 VAL GLY LYS SER ASN LEU LEU SER ARG PHE THR ARG ASN SEQRES 3 A 165 GLU PHE ASN LEU GLU SER LYS SER THR ILE GLY VAL GLU SEQRES 4 A 165 PHE ALA THR ARG SER ILE GLN VAL ASP GLY LYS THR ILE SEQRES 5 A 165 LYS ALA GLN ILE TRP ASP THR ALA GLY GLN GLU ARG TYR SEQRES 6 A 165 ARG ALA ILE THR SER ALA TYR TYR ARG GLY ALA VAL GLY SEQRES 7 A 165 ALA LEU LEU VAL TYR ASP ILE ALA LYS HIS LEU THR TYR SEQRES 8 A 165 GLU ASN VAL GLU ARG TRP LEU LYS GLU LEU ARG ASP HIS SEQRES 9 A 165 ALA ASP SER ASN ILE VAL ILE MET LEU VAL GLY ASN LYS SEQRES 10 A 165 SER ASP LEU ARG HIS LEU ARG ALA VAL PRO THR ASP GLU SEQRES 11 A 165 ALA ARG ALA PHE ALA GLU LYS ASN GLY LEU SER PHE ILE SEQRES 12 A 165 GLU THR SER ALA LEU ASP SER THR ASN VAL GLU ALA ALA SEQRES 13 A 165 PHE GLN THR ILE LEU THR GLU ILE TYR SEQRES 1 B 165 ASP TYR LEU PHE LYS VAL VAL LEU ILE GLY ASP SER GLY SEQRES 2 B 165 VAL GLY LYS SER ASN LEU LEU SER ARG PHE THR ARG ASN SEQRES 3 B 165 GLU PHE ASN LEU GLU SER LYS SER THR ILE GLY VAL GLU SEQRES 4 B 165 PHE ALA THR ARG SER ILE GLN VAL ASP GLY LYS THR ILE SEQRES 5 B 165 LYS ALA GLN ILE TRP ASP THR ALA GLY GLN GLU ARG TYR SEQRES 6 B 165 ARG ALA ILE THR SER ALA TYR TYR ARG GLY ALA VAL GLY SEQRES 7 B 165 ALA LEU LEU VAL TYR ASP ILE ALA LYS HIS LEU THR TYR SEQRES 8 B 165 GLU ASN VAL GLU ARG TRP LEU LYS GLU LEU ARG ASP HIS SEQRES 9 B 165 ALA ASP SER ASN ILE VAL ILE MET LEU VAL GLY ASN LYS SEQRES 10 B 165 SER ASP LEU ARG HIS LEU ARG ALA VAL PRO THR ASP GLU SEQRES 11 B 165 ALA ARG ALA PHE ALA GLU LYS ASN GLY LEU SER PHE ILE SEQRES 12 B 165 GLU THR SER ALA LEU ASP SER THR ASN VAL GLU ALA ALA SEQRES 13 B 165 PHE GLN THR ILE LEU THR GLU ILE TYR SEQRES 1 C 165 ASP TYR LEU PHE LYS VAL VAL LEU ILE GLY ASP SER GLY SEQRES 2 C 165 VAL GLY LYS SER ASN LEU LEU SER ARG PHE THR ARG ASN SEQRES 3 C 165 GLU PHE ASN LEU GLU SER LYS SER THR ILE GLY VAL GLU SEQRES 4 C 165 PHE ALA THR ARG SER ILE GLN VAL ASP GLY LYS THR ILE SEQRES 5 C 165 LYS ALA GLN ILE TRP ASP THR ALA GLY GLN GLU ARG TYR SEQRES 6 C 165 ARG ALA ILE THR SER ALA TYR TYR ARG GLY ALA VAL GLY SEQRES 7 C 165 ALA LEU LEU VAL TYR ASP ILE ALA LYS HIS LEU THR TYR SEQRES 8 C 165 GLU ASN VAL GLU ARG TRP LEU LYS GLU LEU ARG ASP HIS SEQRES 9 C 165 ALA ASP SER ASN ILE VAL ILE MET LEU VAL GLY ASN LYS SEQRES 10 C 165 SER ASP LEU ARG HIS LEU ARG ALA VAL PRO THR ASP GLU SEQRES 11 C 165 ALA ARG ALA PHE ALA GLU LYS ASN GLY LEU SER PHE ILE SEQRES 12 C 165 GLU THR SER ALA LEU ASP SER THR ASN VAL GLU ALA ALA SEQRES 13 C 165 PHE GLN THR ILE LEU THR GLU ILE TYR SEQRES 1 D 167 GLU TYR ASP TYR LEU PHE LYS VAL VAL LEU ILE GLY ASP SEQRES 2 D 167 SER GLY VAL GLY LYS SER ASN LEU LEU SER ARG PHE THR SEQRES 3 D 167 ARG ASN GLU PHE ASN LEU GLU SER LYS SER THR ILE GLY SEQRES 4 D 167 VAL GLU PHE ALA THR ARG SER ILE GLN VAL ASP GLY LYS SEQRES 5 D 167 THR ILE LYS ALA GLN ILE TRP ASP THR ALA GLY GLN GLU SEQRES 6 D 167 ARG TYR ARG ALA ILE THR SER ALA TYR TYR ARG GLY ALA SEQRES 7 D 167 VAL GLY ALA LEU LEU VAL TYR ASP ILE ALA LYS HIS LEU SEQRES 8 D 167 THR TYR GLU ASN VAL GLU ARG TRP LEU LYS GLU LEU ARG SEQRES 9 D 167 ASP HIS ALA ASP SER ASN ILE VAL ILE MET LEU VAL GLY SEQRES 10 D 167 ASN LYS SER ASP LEU ARG HIS LEU ARG ALA VAL PRO THR SEQRES 11 D 167 ASP GLU ALA ARG ALA PHE ALA GLU LYS ASN GLY LEU SER SEQRES 12 D 167 PHE ILE GLU THR SER ALA LEU ASP SER THR ASN VAL GLU SEQRES 13 D 167 ALA ALA PHE GLN THR ILE LEU THR GLU ILE TYR SEQRES 1 E 165 ASP TYR LEU PHE LYS VAL VAL LEU ILE GLY ASP SER GLY SEQRES 2 E 165 VAL GLY LYS SER ASN LEU LEU SER ARG PHE THR ARG ASN SEQRES 3 E 165 GLU PHE ASN LEU GLU SER LYS SER THR ILE GLY VAL GLU SEQRES 4 E 165 PHE ALA THR ARG SER ILE GLN VAL ASP GLY LYS THR ILE SEQRES 5 E 165 LYS ALA GLN ILE TRP ASP THR ALA GLY GLN GLU ARG TYR SEQRES 6 E 165 ARG ALA ILE THR SER ALA TYR TYR ARG GLY ALA VAL GLY SEQRES 7 E 165 ALA LEU LEU VAL TYR ASP ILE ALA LYS HIS LEU THR TYR SEQRES 8 E 165 GLU ASN VAL GLU ARG TRP LEU LYS GLU LEU ARG ASP HIS SEQRES 9 E 165 ALA ASP SER ASN ILE VAL ILE MET LEU VAL GLY ASN LYS SEQRES 10 E 165 SER ASP LEU ARG HIS LEU ARG ALA VAL PRO THR ASP GLU SEQRES 11 E 165 ALA ARG ALA PHE ALA GLU LYS ASN GLY LEU SER PHE ILE SEQRES 12 E 165 GLU THR SER ALA LEU ASP SER THR ASN VAL GLU ALA ALA SEQRES 13 E 165 PHE GLN THR ILE LEU THR GLU ILE TYR SEQRES 1 F 168 ASP GLU TYR ASP TYR LEU PHE LYS VAL VAL LEU ILE GLY SEQRES 2 F 168 ASP SER GLY VAL GLY LYS SER ASN LEU LEU SER ARG PHE SEQRES 3 F 168 THR ARG ASN GLU PHE ASN LEU GLU SER LYS SER THR ILE SEQRES 4 F 168 GLY VAL GLU PHE ALA THR ARG SER ILE GLN VAL ASP GLY SEQRES 5 F 168 LYS THR ILE LYS ALA GLN ILE TRP ASP THR ALA GLY GLN SEQRES 6 F 168 GLU ARG TYR ARG ALA ILE THR SER ALA TYR TYR ARG GLY SEQRES 7 F 168 ALA VAL GLY ALA LEU LEU VAL TYR ASP ILE ALA LYS HIS SEQRES 8 F 168 LEU THR TYR GLU ASN VAL GLU ARG TRP LEU LYS GLU LEU SEQRES 9 F 168 ARG ASP HIS ALA ASP SER ASN ILE VAL ILE MET LEU VAL SEQRES 10 F 168 GLY ASN LYS SER ASP LEU ARG HIS LEU ARG ALA VAL PRO SEQRES 11 F 168 THR ASP GLU ALA ARG ALA PHE ALA GLU LYS ASN GLY LEU SEQRES 12 F 168 SER PHE ILE GLU THR SER ALA LEU ASP SER THR ASN VAL SEQRES 13 F 168 GLU ALA ALA PHE GLN THR ILE LEU THR GLU ILE TYR HET GDP A 201 28 HET GDP B 201 28 HET GDP C 201 28 HET GDP D 201 28 HET GDP E 201 28 HET GDP F 201 28 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE FORMUL 7 GDP 6(C10 H15 N5 O11 P2) FORMUL 13 HOH *214(H2 O) HELIX 1 AA1 GLY A 23 ASN A 34 1 12 HELIX 2 AA2 TYR A 73 ARG A 82 1 10 HELIX 3 AA3 LYS A 95 ASN A 101 1 7 HELIX 4 AA4 ASN A 101 ALA A 113 1 13 HELIX 5 AA5 PRO A 135 GLY A 147 1 13 HELIX 6 AA6 ASN A 160 TYR A 173 1 14 HELIX 7 AA7 GLY B 23 ASN B 34 1 12 HELIX 8 AA8 TYR B 73 ARG B 82 1 10 HELIX 9 AA9 LYS B 95 ASN B 101 1 7 HELIX 10 AB1 ASN B 101 ALA B 113 1 13 HELIX 11 AB2 LEU B 128 ARG B 132 5 5 HELIX 12 AB3 PRO B 135 GLY B 147 1 13 HELIX 13 AB4 ASN B 160 TYR B 173 1 14 HELIX 14 AB5 GLY C 23 ASN C 34 1 12 HELIX 15 AB6 TYR C 73 ARG C 82 1 10 HELIX 16 AB7 LYS C 95 ASN C 101 1 7 HELIX 17 AB8 ASN C 101 ALA C 113 1 13 HELIX 18 AB9 LYS C 125 ARG C 132 5 8 HELIX 19 AC1 PRO C 135 GLY C 147 1 13 HELIX 20 AC2 ASN C 160 TYR C 173 1 14 HELIX 21 AC3 GLY D 23 ASN D 34 1 12 HELIX 22 AC4 TYR D 73 ARG D 82 1 10 HELIX 23 AC5 LYS D 95 ASN D 101 1 7 HELIX 24 AC6 ASN D 101 ALA D 113 1 13 HELIX 25 AC7 LYS D 125 ARG D 132 5 8 HELIX 26 AC8 PRO D 135 GLY D 147 1 13 HELIX 27 AC9 ASN D 160 TYR D 173 1 14 HELIX 28 AD1 GLY E 23 ASN E 34 1 12 HELIX 29 AD2 TYR E 73 ARG E 82 1 10 HELIX 30 AD3 LYS E 95 ASN E 101 1 7 HELIX 31 AD4 ASN E 101 ALA E 113 1 13 HELIX 32 AD5 LYS E 125 ARG E 132 5 8 HELIX 33 AD6 PRO E 135 ASN E 146 1 12 HELIX 34 AD7 ASN E 160 TYR E 173 1 14 HELIX 35 AD8 GLY F 23 ASN F 34 1 12 HELIX 36 AD9 TYR F 73 ARG F 82 1 10 HELIX 37 AE1 LYS F 95 ASN F 101 1 7 HELIX 38 AE2 ASN F 101 ALA F 113 1 13 HELIX 39 AE3 LYS F 125 ARG F 132 5 8 HELIX 40 AE4 PRO F 135 ASN F 146 1 12 HELIX 41 AE5 ASN F 160 TYR F 173 1 14 SHEET 1 AA1 6 VAL A 46 VAL A 55 0 SHEET 2 AA1 6 LYS A 58 THR A 67 -1 O ILE A 60 N ILE A 53 SHEET 3 AA1 6 LEU A 11 ILE A 17 1 N PHE A 12 O GLN A 63 SHEET 4 AA1 6 ALA A 84 ASP A 92 1 O VAL A 90 N ILE A 17 SHEET 5 AA1 6 VAL A 118 ASN A 124 1 O MET A 120 N LEU A 89 SHEET 6 AA1 6 SER A 149 GLU A 152 1 O SER A 149 N LEU A 121 SHEET 1 AA212 SER B 149 GLU B 152 0 SHEET 2 AA212 VAL B 118 ASN B 124 1 N LEU B 121 O SER B 149 SHEET 3 AA212 ALA B 84 ASP B 92 1 N LEU B 89 O VAL B 122 SHEET 4 AA212 LEU B 11 ILE B 17 1 N LYS B 13 O VAL B 85 SHEET 5 AA212 LYS B 58 THR B 67 1 O TRP B 65 N LEU B 16 SHEET 6 AA212 VAL B 46 VAL B 55 -1 N VAL B 55 O LYS B 58 SHEET 7 AA212 VAL D 46 VAL D 55 -1 O VAL D 46 N PHE B 48 SHEET 8 AA212 LYS D 58 THR D 67 -1 O ALA D 62 N ARG D 51 SHEET 9 AA212 LEU D 11 ILE D 17 1 N PHE D 12 O GLN D 63 SHEET 10 AA212 ALA D 84 ASP D 92 1 O VAL D 90 N ILE D 17 SHEET 11 AA212 VAL D 118 ASN D 124 1 O ASN D 124 N TYR D 91 SHEET 12 AA212 SER D 149 GLU D 152 1 O SER D 149 N LEU D 121 SHEET 1 AA3 6 VAL C 46 VAL C 55 0 SHEET 2 AA3 6 LYS C 58 THR C 67 -1 O ALA C 62 N ARG C 51 SHEET 3 AA3 6 LEU C 11 GLY C 18 1 N PHE C 12 O GLN C 63 SHEET 4 AA3 6 ALA C 84 ASP C 92 1 O VAL C 90 N ILE C 17 SHEET 5 AA3 6 VAL C 118 ASN C 124 1 O MET C 120 N LEU C 89 SHEET 6 AA3 6 SER C 149 GLU C 152 1 O SER C 149 N LEU C 121 SHEET 1 AA4 6 VAL E 46 VAL E 55 0 SHEET 2 AA4 6 LYS E 58 THR E 67 -1 O ALA E 62 N ARG E 51 SHEET 3 AA4 6 PHE E 12 ILE E 17 1 N VAL E 14 O GLN E 63 SHEET 4 AA4 6 ALA E 84 ASP E 92 1 O VAL E 90 N ILE E 17 SHEET 5 AA4 6 VAL E 118 ASN E 124 1 O MET E 120 N LEU E 89 SHEET 6 AA4 6 SER E 149 GLU E 152 1 O SER E 149 N LEU E 121 SHEET 1 AA5 6 VAL F 46 VAL F 55 0 SHEET 2 AA5 6 LYS F 58 THR F 67 -1 O ILE F 64 N ALA F 49 SHEET 3 AA5 6 TYR F 10 ILE F 17 1 N PHE F 12 O LYS F 61 SHEET 4 AA5 6 ALA F 84 ASP F 92 1 O VAL F 90 N ILE F 17 SHEET 5 AA5 6 VAL F 118 ASN F 124 1 O ASN F 124 N TYR F 91 SHEET 6 AA5 6 SER F 149 GLU F 152 1 O SER F 149 N LEU F 121 SITE 1 AC1 22 SER A 20 GLY A 21 VAL A 22 GLY A 23 SITE 2 AC1 22 LYS A 24 SER A 25 ASN A 26 PHE A 36 SITE 3 AC1 22 ASN A 37 LEU A 38 SER A 40 SER A 42 SITE 4 AC1 22 ASN A 124 LYS A 125 ASP A 127 LEU A 128 SITE 5 AC1 22 SER A 154 ALA A 155 LEU A 156 HOH A 307 SITE 6 AC1 22 HOH A 322 HOH A 327 SITE 1 AC2 21 SER B 20 GLY B 21 VAL B 22 GLY B 23 SITE 2 AC2 21 LYS B 24 SER B 25 ASN B 26 PHE B 36 SITE 3 AC2 21 ASN B 37 LEU B 38 SER B 40 ASN B 124 SITE 4 AC2 21 LYS B 125 ASP B 127 LEU B 128 SER B 154 SITE 5 AC2 21 ALA B 155 LEU B 156 HOH B 311 HOH B 322 SITE 6 AC2 21 HOH B 325 SITE 1 AC3 23 GLY C 21 VAL C 22 GLY C 23 LYS C 24 SITE 2 AC3 23 SER C 25 ASN C 26 PHE C 36 ASN C 37 SITE 3 AC3 23 LEU C 38 SER C 40 SER C 42 ASN C 124 SITE 4 AC3 23 LYS C 125 ASP C 127 LEU C 128 SER C 154 SITE 5 AC3 23 ALA C 155 LEU C 156 HOH C 315 HOH C 316 SITE 6 AC3 23 HOH C 320 HOH C 332 HOH C 336 SITE 1 AC4 20 GLY D 21 VAL D 22 GLY D 23 LYS D 24 SITE 2 AC4 20 SER D 25 ASN D 26 PHE D 36 ASN D 37 SITE 3 AC4 20 LEU D 38 SER D 40 SER D 42 ASN D 124 SITE 4 AC4 20 LYS D 125 ASP D 127 LEU D 128 SER D 154 SITE 5 AC4 20 ALA D 155 LEU D 156 HOH D 304 HOH D 316 SITE 1 AC5 22 GLU B 162 GLY E 21 VAL E 22 GLY E 23 SITE 2 AC5 22 LYS E 24 SER E 25 ASN E 26 PHE E 36 SITE 3 AC5 22 ASN E 37 LEU E 38 SER E 40 SER E 42 SITE 4 AC5 22 ASN E 124 LYS E 125 ASP E 127 LEU E 128 SITE 5 AC5 22 SER E 154 ALA E 155 LEU E 156 HOH E 301 SITE 6 AC5 22 HOH E 308 HOH E 317 SITE 1 AC6 23 SER F 20 GLY F 21 VAL F 22 GLY F 23 SITE 2 AC6 23 LYS F 24 SER F 25 ASN F 26 PHE F 36 SITE 3 AC6 23 ASN F 37 LEU F 38 SER F 40 SER F 42 SITE 4 AC6 23 ASN F 124 LYS F 125 ASP F 127 LEU F 128 SITE 5 AC6 23 SER F 154 ALA F 155 LEU F 156 HOH F 305 SITE 6 AC6 23 HOH F 319 HOH F 320 HOH F 322 CRYST1 52.606 150.762 60.125 90.00 98.46 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019009 0.000000 0.002826 0.00000 SCALE2 0.000000 0.006633 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016815 0.00000