HEADER TRANSFERASE 19-DEC-18 6IZ9 TITLE CRYSTAL STRUCTURE OF THE APO FORM OF A BETA-TRANSAMINASE FROM TITLE 2 MESORHIZOBIUM SP. STRAIN LUK COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-TRANSAMINASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MESORHIZOBIUM SP. LUK; SOURCE 3 ORGANISM_TAXID: 398267; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS PYRIDOXAL 5'-PHOSPHATE, BETA-TRANSAMINASE, APO FORM, MESORHIZOBIUM KEYWDS 2 SP. STRAIN LUK, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR H.H.PARK,S.KWON REVDAT 3 22-NOV-23 6IZ9 1 REMARK REVDAT 2 24-APR-19 6IZ9 1 JRNL REVDAT 1 20-MAR-19 6IZ9 0 JRNL AUTH S.KWON,H.H.PARK JRNL TITL CRYSTAL STRUCTURE OF THE APO FORM OF A BETA-TRANSAMINASE JRNL TITL 2 FROM MESORHIZOBIUM SP. STRAIN LUK. JRNL REF PROTEIN SCI. V. 28 964 2019 JRNL REFN ESSN 1469-896X JRNL PMID 30805955 JRNL DOI 10.1002/PRO.3594 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.22 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 37831 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.247 REMARK 3 R VALUE (WORKING SET) : 0.241 REMARK 3 FREE R VALUE : 0.291 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.920 REMARK 3 FREE R VALUE TEST SET COUNT : 1860 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.3707 - 5.1716 0.95 2734 139 0.2558 0.2688 REMARK 3 2 5.1716 - 4.1093 0.96 2790 130 0.2115 0.2511 REMARK 3 3 4.1093 - 3.5912 0.95 2741 142 0.2132 0.2558 REMARK 3 4 3.5912 - 3.2634 0.96 2761 117 0.2277 0.3165 REMARK 3 5 3.2634 - 3.0298 0.94 2750 171 0.2395 0.3133 REMARK 3 6 3.0298 - 2.8514 0.95 2702 142 0.2570 0.2920 REMARK 3 7 2.8514 - 2.7087 0.95 2728 158 0.2618 0.3073 REMARK 3 8 2.7087 - 2.5909 0.94 2719 172 0.2632 0.3513 REMARK 3 9 2.5909 - 2.4912 0.95 2769 140 0.2698 0.3589 REMARK 3 10 2.4912 - 2.4053 0.95 2735 135 0.2685 0.3643 REMARK 3 11 2.4053 - 2.3302 0.95 2773 132 0.2726 0.2803 REMARK 3 12 2.3302 - 2.2636 0.96 2787 130 0.2649 0.3296 REMARK 3 13 2.2636 - 2.2040 0.95 2730 152 0.2807 0.2847 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.950 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 5772 REMARK 3 ANGLE : 0.696 7834 REMARK 3 CHIRALITY : 0.041 917 REMARK 3 PLANARITY : 0.004 1040 REMARK 3 DIHEDRAL : 7.392 3376 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6IZ9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-DEC-18. REMARK 100 THE DEPOSITION ID IS D_1300010203. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-APR-12 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 7.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 5C (4A) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97937 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37878 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.199 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.14400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.51700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2E7U REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.3 M SODIUM CITRATE TRIBASIC REMARK 280 DIHYDRATE, 0.1 M HEPES (PH 7.6), 0.1 M CADMIUM CHLORIDE HYDRATE, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.01200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 114.02400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -13 REMARK 465 ALA A -12 REMARK 465 SER A -11 REMARK 465 MET A -10 REMARK 465 THR A -9 REMARK 465 GLY A -8 REMARK 465 GLY A -7 REMARK 465 GLN A -6 REMARK 465 GLN A -5 REMARK 465 MET A -4 REMARK 465 GLY A -3 REMARK 465 ARG A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 GLU A 3 REMARK 465 PRO A 4 REMARK 465 ILE A 5 REMARK 465 GLY A 6 REMARK 465 GLU A 7 REMARK 465 PRO A 8 REMARK 465 GLY A 9 REMARK 465 ARG A 10 REMARK 465 SER A 11 REMARK 465 PRO A 12 REMARK 465 ALA A 13 REMARK 465 SER A 14 REMARK 465 ASP A 15 REMARK 465 THR A 16 REMARK 465 MET A 48 REMARK 465 PRO A 49 REMARK 465 GLY A 50 REMARK 465 GLY A 51 REMARK 465 ASN A 52 REMARK 465 THR A 53 REMARK 465 ARG A 54 REMARK 465 SER A 55 REMARK 465 ILE A 56 REMARK 465 LEU A 57 REMARK 465 PHE A 58 REMARK 465 HIS A 59 REMARK 465 ARG A 300 REMARK 465 PHE A 301 REMARK 465 ASP A 302 REMARK 465 PRO A 303 REMARK 465 ALA A 304 REMARK 465 ARG A 305 REMARK 465 ASP A 306 REMARK 465 GLY A 307 REMARK 465 ALA A 308 REMARK 465 PHE A 309 REMARK 465 ALA A 310 REMARK 465 ALA A 389 REMARK 465 ALA A 390 REMARK 465 ALA A 448 REMARK 465 LEU A 449 REMARK 465 GLU A 450 REMARK 465 HIS A 451 REMARK 465 HIS A 452 REMARK 465 HIS A 453 REMARK 465 HIS A 454 REMARK 465 HIS A 455 REMARK 465 HIS A 456 REMARK 465 MET B -13 REMARK 465 ALA B -12 REMARK 465 SER B -11 REMARK 465 MET B -10 REMARK 465 THR B -9 REMARK 465 GLY B -8 REMARK 465 GLY B -7 REMARK 465 GLN B -6 REMARK 465 GLN B -5 REMARK 465 MET B -4 REMARK 465 GLY B -3 REMARK 465 ARG B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 ASN B 2 REMARK 465 GLU B 3 REMARK 465 PRO B 4 REMARK 465 ILE B 5 REMARK 465 GLY B 6 REMARK 465 GLU B 7 REMARK 465 PRO B 8 REMARK 465 GLY B 9 REMARK 465 ARG B 10 REMARK 465 SER B 11 REMARK 465 PRO B 12 REMARK 465 ALA B 13 REMARK 465 SER B 14 REMARK 465 ASP B 15 REMARK 465 THR B 16 REMARK 465 ARG B 46 REMARK 465 SER B 47 REMARK 465 MET B 48 REMARK 465 PRO B 49 REMARK 465 GLY B 50 REMARK 465 GLY B 51 REMARK 465 ASN B 52 REMARK 465 THR B 53 REMARK 465 ARG B 54 REMARK 465 SER B 55 REMARK 465 ILE B 56 REMARK 465 LEU B 57 REMARK 465 PHE B 58 REMARK 465 HIS B 59 REMARK 465 ASP B 302 REMARK 465 PRO B 303 REMARK 465 ALA B 304 REMARK 465 ARG B 305 REMARK 465 ASP B 306 REMARK 465 GLY B 307 REMARK 465 ALA B 308 REMARK 465 PHE B 309 REMARK 465 ALA B 310 REMARK 465 HIS B 311 REMARK 465 ALA B 312 REMARK 465 GLY B 313 REMARK 465 ALA B 389 REMARK 465 ALA B 390 REMARK 465 ALA B 422 REMARK 465 ALA B 448 REMARK 465 LEU B 449 REMARK 465 GLU B 450 REMARK 465 HIS B 451 REMARK 465 HIS B 452 REMARK 465 HIS B 453 REMARK 465 HIS B 454 REMARK 465 HIS B 455 REMARK 465 HIS B 456 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 27 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 28 CG OD1 ND2 REMARK 470 ARG A 32 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 36 CG1 CG2 REMARK 470 ARG A 45 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 46 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 60 CG CD NE CZ NH1 NH2 REMARK 470 PHE A 74 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PHE A 85 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 107 CG CD NE CZ NH1 NH2 REMARK 470 THR A 119 OG1 CG2 REMARK 470 LEU A 124 CG CD1 CD2 REMARK 470 ARG A 140 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 183 CG ND1 CD2 CE1 NE2 REMARK 470 ASP A 205 CG OD1 OD2 REMARK 470 LEU A 238 CG CD1 CD2 REMARK 470 ARG A 245 CG CD NE CZ NH1 NH2 REMARK 470 PHE A 252 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 295 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 311 CG ND1 CD2 CE1 NE2 REMARK 470 TYR A 333 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 354 CG CD NE CZ NH1 NH2 REMARK 470 PHE A 376 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 378 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 382 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 388 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 395 CG CD CE NZ REMARK 470 GLU A 396 CG CD OE1 OE2 REMARK 470 ARG A 404 CG CD NE CZ NH1 NH2 REMARK 470 TYR A 415 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 420 CG CD OE1 OE2 REMARK 470 ARG A 426 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 431 CG CD OE1 OE2 REMARK 470 ASP A 435 CG OD1 OD2 REMARK 470 PHE A 436 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 439 CG CD OE1 OE2 REMARK 470 MET A 445 CG SD CE REMARK 470 GLN B 21 CG CD OE1 NE2 REMARK 470 ARG B 27 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 28 CG OD1 ND2 REMARK 470 ARG B 32 CG CD NE CZ NH1 NH2 REMARK 470 VAL B 36 CG1 CG2 REMARK 470 ARG B 45 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 60 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 73 NH1 NH2 REMARK 470 PHE B 74 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PHE B 85 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG B 102 NH1 NH2 REMARK 470 ARG B 107 NH1 NH2 REMARK 470 THR B 117 OG1 CG2 REMARK 470 GLU B 120 CG CD OE1 OE2 REMARK 470 LEU B 124 CG CD1 CD2 REMARK 470 ARG B 132 NH1 NH2 REMARK 470 ASP B 137 CG OD1 OD2 REMARK 470 ARG B 140 NH1 NH2 REMARK 470 ARG B 162 NH1 NH2 REMARK 470 HIS B 183 CG ND1 CD2 CE1 NE2 REMARK 470 ASP B 205 CG OD1 OD2 REMARK 470 ARG B 209 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 233 NH1 NH2 REMARK 470 LEU B 238 CG CD1 CD2 REMARK 470 GLU B 267 CG CD OE1 OE2 REMARK 470 ARG B 294 NH1 NH2 REMARK 470 ARG B 295 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 300 NH1 NH2 REMARK 470 TYR B 333 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG B 335 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 354 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 360 CG CD OE1 NE2 REMARK 470 PHE B 376 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG B 378 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 382 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 388 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 395 CG CD CE NZ REMARK 470 GLU B 396 CG CD OE1 OE2 REMARK 470 ARG B 412 CG CD NE CZ NH1 NH2 REMARK 470 TYR B 415 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG B 426 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 431 CG CD OE1 OE2 REMARK 470 ASP B 435 CG OD1 OD2 REMARK 470 PHE B 436 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 439 CG CD OE1 OE2 REMARK 470 MET B 445 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 90 -6.34 77.35 REMARK 500 PRO A 189 48.83 -76.38 REMARK 500 THR B 90 -3.45 76.97 REMARK 500 SER B 116 -178.50 -69.26 REMARK 500 ILE B 332 -50.36 -121.05 REMARK 500 PRO B 362 59.93 -90.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 692 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH B 693 DISTANCE = 6.23 ANGSTROMS REMARK 525 HOH B 694 DISTANCE = 7.09 ANGSTROMS DBREF 6IZ9 A 1 445 UNP A3EYF7 A3EYF7_9RHIZ 1 445 DBREF 6IZ9 B 1 445 UNP A3EYF7 A3EYF7_9RHIZ 1 445 SEQADV 6IZ9 MET A -13 UNP A3EYF7 EXPRESSION TAG SEQADV 6IZ9 ALA A -12 UNP A3EYF7 EXPRESSION TAG SEQADV 6IZ9 SER A -11 UNP A3EYF7 EXPRESSION TAG SEQADV 6IZ9 MET A -10 UNP A3EYF7 EXPRESSION TAG SEQADV 6IZ9 THR A -9 UNP A3EYF7 EXPRESSION TAG SEQADV 6IZ9 GLY A -8 UNP A3EYF7 EXPRESSION TAG SEQADV 6IZ9 GLY A -7 UNP A3EYF7 EXPRESSION TAG SEQADV 6IZ9 GLN A -6 UNP A3EYF7 EXPRESSION TAG SEQADV 6IZ9 GLN A -5 UNP A3EYF7 EXPRESSION TAG SEQADV 6IZ9 MET A -4 UNP A3EYF7 EXPRESSION TAG SEQADV 6IZ9 GLY A -3 UNP A3EYF7 EXPRESSION TAG SEQADV 6IZ9 ARG A -2 UNP A3EYF7 EXPRESSION TAG SEQADV 6IZ9 GLY A -1 UNP A3EYF7 EXPRESSION TAG SEQADV 6IZ9 SER A 0 UNP A3EYF7 EXPRESSION TAG SEQADV 6IZ9 ALA A 446 UNP A3EYF7 EXPRESSION TAG SEQADV 6IZ9 ALA A 447 UNP A3EYF7 EXPRESSION TAG SEQADV 6IZ9 ALA A 448 UNP A3EYF7 EXPRESSION TAG SEQADV 6IZ9 LEU A 449 UNP A3EYF7 EXPRESSION TAG SEQADV 6IZ9 GLU A 450 UNP A3EYF7 EXPRESSION TAG SEQADV 6IZ9 HIS A 451 UNP A3EYF7 EXPRESSION TAG SEQADV 6IZ9 HIS A 452 UNP A3EYF7 EXPRESSION TAG SEQADV 6IZ9 HIS A 453 UNP A3EYF7 EXPRESSION TAG SEQADV 6IZ9 HIS A 454 UNP A3EYF7 EXPRESSION TAG SEQADV 6IZ9 HIS A 455 UNP A3EYF7 EXPRESSION TAG SEQADV 6IZ9 HIS A 456 UNP A3EYF7 EXPRESSION TAG SEQADV 6IZ9 MET B -13 UNP A3EYF7 EXPRESSION TAG SEQADV 6IZ9 ALA B -12 UNP A3EYF7 EXPRESSION TAG SEQADV 6IZ9 SER B -11 UNP A3EYF7 EXPRESSION TAG SEQADV 6IZ9 MET B -10 UNP A3EYF7 EXPRESSION TAG SEQADV 6IZ9 THR B -9 UNP A3EYF7 EXPRESSION TAG SEQADV 6IZ9 GLY B -8 UNP A3EYF7 EXPRESSION TAG SEQADV 6IZ9 GLY B -7 UNP A3EYF7 EXPRESSION TAG SEQADV 6IZ9 GLN B -6 UNP A3EYF7 EXPRESSION TAG SEQADV 6IZ9 GLN B -5 UNP A3EYF7 EXPRESSION TAG SEQADV 6IZ9 MET B -4 UNP A3EYF7 EXPRESSION TAG SEQADV 6IZ9 GLY B -3 UNP A3EYF7 EXPRESSION TAG SEQADV 6IZ9 ARG B -2 UNP A3EYF7 EXPRESSION TAG SEQADV 6IZ9 GLY B -1 UNP A3EYF7 EXPRESSION TAG SEQADV 6IZ9 SER B 0 UNP A3EYF7 EXPRESSION TAG SEQADV 6IZ9 ALA B 446 UNP A3EYF7 EXPRESSION TAG SEQADV 6IZ9 ALA B 447 UNP A3EYF7 EXPRESSION TAG SEQADV 6IZ9 ALA B 448 UNP A3EYF7 EXPRESSION TAG SEQADV 6IZ9 LEU B 449 UNP A3EYF7 EXPRESSION TAG SEQADV 6IZ9 GLU B 450 UNP A3EYF7 EXPRESSION TAG SEQADV 6IZ9 HIS B 451 UNP A3EYF7 EXPRESSION TAG SEQADV 6IZ9 HIS B 452 UNP A3EYF7 EXPRESSION TAG SEQADV 6IZ9 HIS B 453 UNP A3EYF7 EXPRESSION TAG SEQADV 6IZ9 HIS B 454 UNP A3EYF7 EXPRESSION TAG SEQADV 6IZ9 HIS B 455 UNP A3EYF7 EXPRESSION TAG SEQADV 6IZ9 HIS B 456 UNP A3EYF7 EXPRESSION TAG SEQRES 1 A 470 MET ALA SER MET THR GLY GLY GLN GLN MET GLY ARG GLY SEQRES 2 A 470 SER MET ASN GLU PRO ILE GLY GLU PRO GLY ARG SER PRO SEQRES 3 A 470 ALA SER ASP THR ALA GLU LYS ALA GLN ALA ILE ALA ALA SEQRES 4 A 470 ALA ARG ASN THR PHE ALA ARG ASP ASN PRO VAL SER ALA SEQRES 5 A 470 GLY HIS HIS GLU ARG ALA ARG ARG SER MET PRO GLY GLY SEQRES 6 A 470 ASN THR ARG SER ILE LEU PHE HIS ARG PRO PHE PRO LEU SEQRES 7 A 470 VAL ILE ALA GLN GLY THR GLY SER ARG PHE GLN ASP VAL SEQRES 8 A 470 ASP GLY HIS ALA TYR VAL ASN PHE LEU GLY GLU TYR THR SEQRES 9 A 470 ALA GLY LEU PHE GLY HIS SER HIS PRO VAL ILE ARG ALA SEQRES 10 A 470 ALA VAL GLU ARG ALA LEU ALA VAL GLY LEU ASN LEU SER SEQRES 11 A 470 THR GLN THR GLU ASN GLU ALA LEU PHE ALA GLU ALA VAL SEQRES 12 A 470 CYS ASP ARG PHE PRO SER ILE ASP LEU VAL ARG PHE THR SEQRES 13 A 470 ASN SER GLY THR GLU ALA ASN LEU MET ALA LEU ALA THR SEQRES 14 A 470 ALA THR ALA ILE THR GLY ARG LYS THR VAL LEU ALA PHE SEQRES 15 A 470 ASP GLY GLY TYR HIS GLY GLY LEU LEU ASN PHE ALA SER SEQRES 16 A 470 GLY HIS ALA PRO THR ASN ALA PRO TYR HIS VAL VAL LEU SEQRES 17 A 470 GLY VAL TYR ASN ASP VAL GLU GLY THR ALA ASP LEU LEU SEQRES 18 A 470 LYS ARG HIS GLY HIS ASP CYS ALA ALA ILE LEU VAL GLU SEQRES 19 A 470 PRO MET LEU GLY ALA GLY GLY CYS VAL PRO ALA GLU ARG SEQRES 20 A 470 ALA PHE LEU ASP LEU LEU ARG ALA GLU ALA SER ARG CYS SEQRES 21 A 470 GLY ALA LEU LEU ILE PHE ASP GLU VAL MET THR SER ARG SEQRES 22 A 470 LEU SER GLY GLY GLY ALA GLN GLU MET LEU GLY ILE SER SEQRES 23 A 470 ALA ASP LEU THR THR LEU GLY LYS TYR ILE GLY GLY GLY SEQRES 24 A 470 MET SER PHE GLY ALA PHE GLY GLY ARG ARG ASP LEU MET SEQRES 25 A 470 GLU ARG PHE ASP PRO ALA ARG ASP GLY ALA PHE ALA HIS SEQRES 26 A 470 ALA GLY THR PHE ASN ASN ASN ILE LEU THR MET SER ALA SEQRES 27 A 470 GLY HIS ALA ALA LEU THR GLN ILE TYR THR ARG GLN ALA SEQRES 28 A 470 ALA SER ASP LEU SER ALA SER GLY ASP ARG PHE ARG ALA SEQRES 29 A 470 ASN LEU ASN ARG ILE ALA VAL GLU ASN GLN ALA PRO LEU SEQRES 30 A 470 GLN PHE THR GLY LEU GLY SER LEU GLY THR ILE HIS PHE SEQRES 31 A 470 SER ARG ALA PRO ILE ARG SER ALA GLY ASP VAL ARG ALA SEQRES 32 A 470 ALA ASP GLN GLN LEU LYS GLU LEU PHE PHE PHE HIS MET SEQRES 33 A 470 LEU ARG LYS GLY ILE TYR LEU ALA PRO ARG GLY MET TYR SEQRES 34 A 470 ALA LEU SER LEU GLU ILE ALA ASP ALA GLY ARG ASP ALA SEQRES 35 A 470 PHE ALA GLU ALA LEU ALA ASP PHE ILE GLY GLU GLN ARG SEQRES 36 A 470 ALA LEU LEU MET ALA ALA ALA LEU GLU HIS HIS HIS HIS SEQRES 37 A 470 HIS HIS SEQRES 1 B 470 MET ALA SER MET THR GLY GLY GLN GLN MET GLY ARG GLY SEQRES 2 B 470 SER MET ASN GLU PRO ILE GLY GLU PRO GLY ARG SER PRO SEQRES 3 B 470 ALA SER ASP THR ALA GLU LYS ALA GLN ALA ILE ALA ALA SEQRES 4 B 470 ALA ARG ASN THR PHE ALA ARG ASP ASN PRO VAL SER ALA SEQRES 5 B 470 GLY HIS HIS GLU ARG ALA ARG ARG SER MET PRO GLY GLY SEQRES 6 B 470 ASN THR ARG SER ILE LEU PHE HIS ARG PRO PHE PRO LEU SEQRES 7 B 470 VAL ILE ALA GLN GLY THR GLY SER ARG PHE GLN ASP VAL SEQRES 8 B 470 ASP GLY HIS ALA TYR VAL ASN PHE LEU GLY GLU TYR THR SEQRES 9 B 470 ALA GLY LEU PHE GLY HIS SER HIS PRO VAL ILE ARG ALA SEQRES 10 B 470 ALA VAL GLU ARG ALA LEU ALA VAL GLY LEU ASN LEU SER SEQRES 11 B 470 THR GLN THR GLU ASN GLU ALA LEU PHE ALA GLU ALA VAL SEQRES 12 B 470 CYS ASP ARG PHE PRO SER ILE ASP LEU VAL ARG PHE THR SEQRES 13 B 470 ASN SER GLY THR GLU ALA ASN LEU MET ALA LEU ALA THR SEQRES 14 B 470 ALA THR ALA ILE THR GLY ARG LYS THR VAL LEU ALA PHE SEQRES 15 B 470 ASP GLY GLY TYR HIS GLY GLY LEU LEU ASN PHE ALA SER SEQRES 16 B 470 GLY HIS ALA PRO THR ASN ALA PRO TYR HIS VAL VAL LEU SEQRES 17 B 470 GLY VAL TYR ASN ASP VAL GLU GLY THR ALA ASP LEU LEU SEQRES 18 B 470 LYS ARG HIS GLY HIS ASP CYS ALA ALA ILE LEU VAL GLU SEQRES 19 B 470 PRO MET LEU GLY ALA GLY GLY CYS VAL PRO ALA GLU ARG SEQRES 20 B 470 ALA PHE LEU ASP LEU LEU ARG ALA GLU ALA SER ARG CYS SEQRES 21 B 470 GLY ALA LEU LEU ILE PHE ASP GLU VAL MET THR SER ARG SEQRES 22 B 470 LEU SER GLY GLY GLY ALA GLN GLU MET LEU GLY ILE SER SEQRES 23 B 470 ALA ASP LEU THR THR LEU GLY LYS TYR ILE GLY GLY GLY SEQRES 24 B 470 MET SER PHE GLY ALA PHE GLY GLY ARG ARG ASP LEU MET SEQRES 25 B 470 GLU ARG PHE ASP PRO ALA ARG ASP GLY ALA PHE ALA HIS SEQRES 26 B 470 ALA GLY THR PHE ASN ASN ASN ILE LEU THR MET SER ALA SEQRES 27 B 470 GLY HIS ALA ALA LEU THR GLN ILE TYR THR ARG GLN ALA SEQRES 28 B 470 ALA SER ASP LEU SER ALA SER GLY ASP ARG PHE ARG ALA SEQRES 29 B 470 ASN LEU ASN ARG ILE ALA VAL GLU ASN GLN ALA PRO LEU SEQRES 30 B 470 GLN PHE THR GLY LEU GLY SER LEU GLY THR ILE HIS PHE SEQRES 31 B 470 SER ARG ALA PRO ILE ARG SER ALA GLY ASP VAL ARG ALA SEQRES 32 B 470 ALA ASP GLN GLN LEU LYS GLU LEU PHE PHE PHE HIS MET SEQRES 33 B 470 LEU ARG LYS GLY ILE TYR LEU ALA PRO ARG GLY MET TYR SEQRES 34 B 470 ALA LEU SER LEU GLU ILE ALA ASP ALA GLY ARG ASP ALA SEQRES 35 B 470 PHE ALA GLU ALA LEU ALA ASP PHE ILE GLY GLU GLN ARG SEQRES 36 B 470 ALA LEU LEU MET ALA ALA ALA LEU GLU HIS HIS HIS HIS SEQRES 37 B 470 HIS HIS FORMUL 3 HOH *379(H2 O) HELIX 1 AA1 ALA A 17 ASN A 34 1 18 HELIX 2 AA2 ASN A 34 ARG A 45 1 12 HELIX 3 AA3 HIS A 98 GLY A 112 1 15 HELIX 4 AA4 THR A 119 PHE A 133 1 15 HELIX 5 AA5 SER A 144 GLY A 161 1 18 HELIX 6 AA6 ASP A 199 GLY A 211 1 13 HELIX 7 AA7 GLU A 232 GLY A 247 1 16 HELIX 8 AA8 MET A 256 SER A 261 5 6 HELIX 9 AA9 GLY A 263 GLY A 270 1 8 HELIX 10 AB1 GLY A 279 GLY A 284 5 6 HELIX 11 AB2 ASN A 318 ILE A 332 1 15 HELIX 12 AB3 THR A 334 ASN A 359 1 26 HELIX 13 AB4 SER A 383 ARG A 388 5 6 HELIX 14 AB5 GLN A 392 LYS A 405 1 14 HELIX 15 AB6 ALA A 422 GLN A 440 1 19 HELIX 16 AB7 ARG A 441 LEU A 444 5 4 HELIX 17 AB8 GLU B 18 ASN B 34 1 17 HELIX 18 AB9 ASN B 34 ARG B 45 1 12 HELIX 19 AC1 HIS B 98 GLY B 112 1 15 HELIX 20 AC2 THR B 119 PHE B 133 1 15 HELIX 21 AC3 SER B 144 GLY B 161 1 18 HELIX 22 AC4 ASP B 199 GLY B 211 1 13 HELIX 23 AC5 GLU B 232 GLY B 247 1 16 HELIX 24 AC6 MET B 256 SER B 261 5 6 HELIX 25 AC7 GLY B 263 GLY B 270 1 8 HELIX 26 AC8 GLY B 279 GLY B 284 5 6 HELIX 27 AC9 ARG B 294 GLU B 299 1 6 HELIX 28 AD1 ASN B 318 ILE B 332 1 15 HELIX 29 AD2 THR B 334 ASN B 359 1 26 HELIX 30 AD3 SER B 383 ARG B 388 5 6 HELIX 31 AD4 GLN B 392 LYS B 405 1 14 HELIX 32 AD5 ALA B 424 GLN B 440 1 17 HELIX 33 AD6 ARG B 441 LEU B 444 5 4 SHEET 1 AA1 4 ILE A 66 THR A 70 0 SHEET 2 AA1 4 ARG A 73 ASP A 76 -1 O GLN A 75 N GLN A 68 SHEET 3 AA1 4 ALA A 81 ASN A 84 -1 O TYR A 82 N PHE A 74 SHEET 4 AA1 4 ILE A 407 TYR A 408 1 O TYR A 408 N VAL A 83 SHEET 1 AA2 7 LEU A 138 THR A 142 0 SHEET 2 AA2 7 GLY A 289 GLY A 293 -1 O GLY A 289 N THR A 142 SHEET 3 AA2 7 LEU A 275 LEU A 278 -1 N LEU A 278 O ALA A 290 SHEET 4 AA2 7 LEU A 249 ASP A 253 1 N PHE A 252 O LEU A 275 SHEET 5 AA2 7 CYS A 214 VAL A 219 1 N ILE A 217 O ILE A 251 SHEET 6 AA2 7 THR A 164 PHE A 168 1 N THR A 164 O ALA A 215 SHEET 7 AA2 7 HIS A 191 GLY A 195 1 O VAL A 193 N VAL A 165 SHEET 1 AA3 2 TYR A 172 GLY A 174 0 SHEET 2 AA3 2 LEU A 177 ASN A 178 -1 O LEU A 177 N HIS A 173 SHEET 1 AA4 2 MET A 222 LEU A 223 0 SHEET 2 AA4 2 VAL A 229 PRO A 230 -1 O VAL A 229 N LEU A 223 SHEET 1 AA5 3 GLN A 364 LEU A 368 0 SHEET 2 AA5 3 LEU A 371 HIS A 375 -1 O THR A 373 N THR A 366 SHEET 3 AA5 3 MET A 414 ALA A 416 -1 O TYR A 415 N GLY A 372 SHEET 1 AA6 4 ILE B 66 THR B 70 0 SHEET 2 AA6 4 ARG B 73 ASP B 76 -1 O GLN B 75 N ALA B 67 SHEET 3 AA6 4 ALA B 81 ASN B 84 -1 O TYR B 82 N PHE B 74 SHEET 4 AA6 4 ILE B 407 TYR B 408 1 O TYR B 408 N VAL B 83 SHEET 1 AA7 7 LEU B 138 THR B 142 0 SHEET 2 AA7 7 GLY B 289 GLY B 293 -1 O GLY B 289 N THR B 142 SHEET 3 AA7 7 LEU B 275 LEU B 278 -1 N LEU B 278 O ALA B 290 SHEET 4 AA7 7 LEU B 249 ASP B 253 1 N LEU B 250 O LEU B 275 SHEET 5 AA7 7 CYS B 214 VAL B 219 1 N ILE B 217 O ILE B 251 SHEET 6 AA7 7 THR B 164 PHE B 168 1 N THR B 164 O ALA B 215 SHEET 7 AA7 7 HIS B 191 GLY B 195 1 O VAL B 193 N VAL B 165 SHEET 1 AA8 2 TYR B 172 GLY B 174 0 SHEET 2 AA8 2 LEU B 177 ASN B 178 -1 O LEU B 177 N HIS B 173 SHEET 1 AA9 2 MET B 222 LEU B 223 0 SHEET 2 AA9 2 VAL B 229 PRO B 230 -1 O VAL B 229 N LEU B 223 SHEET 1 AB1 3 GLN B 364 LEU B 368 0 SHEET 2 AB1 3 LEU B 371 HIS B 375 -1 O HIS B 375 N GLN B 364 SHEET 3 AB1 3 MET B 414 ALA B 416 -1 O TYR B 415 N GLY B 372 CRYST1 62.397 62.397 171.036 90.00 90.00 120.00 P 31 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016026 0.009253 0.000000 0.00000 SCALE2 0.000000 0.018506 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005847 0.00000