HEADER TRANSPORT PROTEIN 20-DEC-18 6IZT TITLE CRYSTAL STRUCTURE OF HAEMOPHILUS INFLUENZAE BAMA POTRA3-5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: OUTER MEMBRANE PROTEIN ASSEMBLY FACTOR BAMA; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 80 KDA D15 ANTIGEN,D-15-AG,OUTER MEMBRANE PROTEIN D15, COMPND 5 PROTECTIVE SURFACE ANTIGEN D15; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HAEMOPHILUS INFLUENZAE; SOURCE 3 ORGANISM_TAXID: 727; SOURCE 4 GENE: BAMA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BETA-BARREL ASSEMBLY MACHINERY, POLY-POTRAS, OMP RECRUITMENT, LIPO- KEYWDS 2 PARTNERS, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR X.MA,Q.WANG,Y.LI,P.TAN,H.WU,P.WANG,X.DONG,L.HONG,G.MENG REVDAT 4 22-NOV-23 6IZT 1 REMARK REVDAT 3 18-DEC-19 6IZT 1 JRNL REVDAT 2 27-NOV-19 6IZT 1 JRNL REVDAT 1 30-OCT-19 6IZT 0 JRNL AUTH X.MA,Q.WANG,Y.LI,P.TAN,H.WU,P.WANG,X.DONG,L.HONG,G.MENG JRNL TITL HOW BAMA RECRUITS OMP SUBSTRATESVIAPOLY-POTRAS DOMAIN. JRNL REF FASEB J. V. 33 14690 2019 JRNL REFN ESSN 1530-6860 JRNL PMID 31702961 JRNL DOI 10.1096/FJ.201900681RR REMARK 2 REMARK 2 RESOLUTION. 2.03 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.03 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.10 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 40985 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 2074 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 55.1000 - 5.0035 1.00 2776 144 0.2183 0.2381 REMARK 3 2 5.0035 - 3.9715 1.00 2663 123 0.1491 0.1893 REMARK 3 3 3.9715 - 3.4695 1.00 2635 136 0.1756 0.1813 REMARK 3 4 3.4695 - 3.1523 1.00 2602 138 0.1949 0.2525 REMARK 3 5 3.1523 - 2.9263 1.00 2617 131 0.2214 0.2544 REMARK 3 6 2.9263 - 2.7538 1.00 2561 154 0.2352 0.2575 REMARK 3 7 2.7538 - 2.6159 1.00 2602 103 0.2378 0.2372 REMARK 3 8 2.6159 - 2.5020 1.00 2582 137 0.2375 0.2683 REMARK 3 9 2.5020 - 2.4057 1.00 2554 153 0.2325 0.2971 REMARK 3 10 2.4057 - 2.3227 1.00 2570 141 0.2371 0.2671 REMARK 3 11 2.3227 - 2.2500 1.00 2549 141 0.2422 0.2226 REMARK 3 12 2.2500 - 2.1857 1.00 2559 132 0.2420 0.3001 REMARK 3 13 2.1857 - 2.1282 1.00 2559 159 0.2464 0.2403 REMARK 3 14 2.1282 - 2.0762 1.00 2542 138 0.2665 0.2937 REMARK 3 15 2.0762 - 2.0300 1.00 2540 144 0.2922 0.3147 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.310 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 4072 REMARK 3 ANGLE : 0.870 5500 REMARK 3 CHIRALITY : 0.051 614 REMARK 3 PLANARITY : 0.004 726 REMARK 3 DIHEDRAL : 14.921 2468 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 13 THROUGH 91 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.1789 -24.5799 -8.5057 REMARK 3 T TENSOR REMARK 3 T11: 0.2992 T22: 0.2220 REMARK 3 T33: 0.2304 T12: -0.0390 REMARK 3 T13: -0.0112 T23: -0.0173 REMARK 3 L TENSOR REMARK 3 L11: 0.1034 L22: 0.0180 REMARK 3 L33: 0.0529 L12: -0.0166 REMARK 3 L13: -0.0137 L23: 0.0165 REMARK 3 S TENSOR REMARK 3 S11: -0.0363 S12: 0.0667 S13: -0.0043 REMARK 3 S21: 0.0597 S22: 0.0244 S23: -0.0087 REMARK 3 S31: 0.2635 S32: -0.0515 S33: -0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 92 THROUGH 207 ) REMARK 3 ORIGIN FOR THE GROUP (A): -35.5079 -2.4883 -0.3743 REMARK 3 T TENSOR REMARK 3 T11: 0.2204 T22: 0.2197 REMARK 3 T33: 0.2377 T12: -0.0273 REMARK 3 T13: 0.0044 T23: 0.0059 REMARK 3 L TENSOR REMARK 3 L11: 0.1255 L22: 0.1651 REMARK 3 L33: 0.0331 L12: 0.0403 REMARK 3 L13: 0.0447 L23: 0.0393 REMARK 3 S TENSOR REMARK 3 S11: -0.0115 S12: -0.0029 S13: 0.0062 REMARK 3 S21: 0.0282 S22: -0.0283 S23: -0.0915 REMARK 3 S31: 0.0368 S32: -0.0043 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 208 THROUGH 266 ) REMARK 3 ORIGIN FOR THE GROUP (A): -50.7509 6.8009 -15.7901 REMARK 3 T TENSOR REMARK 3 T11: 0.2750 T22: 0.2926 REMARK 3 T33: 0.2762 T12: -0.0456 REMARK 3 T13: 0.0266 T23: -0.0347 REMARK 3 L TENSOR REMARK 3 L11: 0.0468 L22: 0.0410 REMARK 3 L33: 0.0602 L12: 0.0199 REMARK 3 L13: 0.0513 L23: 0.0017 REMARK 3 S TENSOR REMARK 3 S11: -0.0133 S12: 0.0175 S13: -0.0324 REMARK 3 S21: -0.2057 S22: -0.0506 S23: -0.0147 REMARK 3 S31: 0.0984 S32: -0.0727 S33: 0.0001 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 13 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.1769 17.9803 -6.3301 REMARK 3 T TENSOR REMARK 3 T11: 0.1675 T22: 0.2103 REMARK 3 T33: 0.1883 T12: 0.0047 REMARK 3 T13: 0.0036 T23: 0.0016 REMARK 3 L TENSOR REMARK 3 L11: 0.1864 L22: 0.1788 REMARK 3 L33: 0.2211 L12: 0.0502 REMARK 3 L13: 0.1528 L23: 0.1958 REMARK 3 S TENSOR REMARK 3 S11: 0.0026 S12: 0.0344 S13: -0.0060 REMARK 3 S21: -0.0078 S22: 0.0166 S23: -0.0130 REMARK 3 S31: -0.0362 S32: -0.0392 S33: -0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 189 THROUGH 266 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.4236 -8.4907 -22.5160 REMARK 3 T TENSOR REMARK 3 T11: 0.4204 T22: 0.3512 REMARK 3 T33: 0.2639 T12: -0.2366 REMARK 3 T13: -0.1767 T23: 0.0615 REMARK 3 L TENSOR REMARK 3 L11: 0.0775 L22: 0.0224 REMARK 3 L33: 0.1501 L12: -0.0357 REMARK 3 L13: -0.0194 L23: -0.0132 REMARK 3 S TENSOR REMARK 3 S11: -0.3054 S12: 0.2339 S13: 0.2535 REMARK 3 S21: -0.2594 S22: 0.1813 S23: 0.1670 REMARK 3 S31: -0.1488 S32: 0.0035 S33: -0.1166 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6IZT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1300010225. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-NOV-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NFPSS REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9785 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41023 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.030 REMARK 200 RESOLUTION RANGE LOW (A) : 55.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 22.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.18300 REMARK 200 FOR THE DATA SET : 15.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.03 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 1.09000 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6J09 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG4000, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.34000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.09000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.95000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.09000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.34000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.95000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 SER A 11 REMARK 465 SER A 12 REMARK 465 ARG A 267 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 SER B 3 REMARK 465 SER B 4 REMARK 465 HIS B 5 REMARK 465 HIS B 6 REMARK 465 HIS B 7 REMARK 465 HIS B 8 REMARK 465 HIS B 9 REMARK 465 HIS B 10 REMARK 465 SER B 11 REMARK 465 SER B 12 REMARK 465 ARG B 267 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH TYR B 74 O HOH B 305 1.41 REMARK 500 HD22 ASN B 121 O HOH B 302 1.41 REMARK 500 O GLN A 47 HG SER A 50 1.44 REMARK 500 HH11 ARG A 237 O HOH A 304 1.47 REMARK 500 O ASN B 93 H LYS B 96 1.51 REMARK 500 O ALA B 207 HG1 THR B 210 1.55 REMARK 500 O ARG A 161 HE ARG A 192 1.57 REMARK 500 O HOH A 315 O HOH A 470 1.89 REMARK 500 O HOH B 424 O HOH B 450 1.90 REMARK 500 O HOH A 463 O HOH A 468 1.98 REMARK 500 O HOH B 422 O HOH B 430 2.01 REMARK 500 OD2 ASP B 104 O HOH B 301 2.01 REMARK 500 ND2 ASN B 121 O HOH B 302 2.04 REMARK 500 O PHE A 200 O HOH A 301 2.11 REMARK 500 OE2 GLU B 257 O HOH B 303 2.13 REMARK 500 O HOH A 452 O HOH A 457 2.14 REMARK 500 O HOH A 474 O HOH A 478 2.15 REMARK 500 O ALA B 207 OG1 THR B 210 2.15 REMARK 500 O GLN A 47 OG SER A 50 2.16 REMARK 500 OE1 GLN B 84 O HOH B 304 2.16 REMARK 500 O HOH A 484 O HOH A 490 2.17 REMARK 500 O HOH A 450 O HOH A 472 2.17 REMARK 500 NH1 ARG A 247 OD1 ASP A 249 2.17 REMARK 500 O HOH B 433 O HOH B 434 2.18 REMARK 500 OE1 GLU A 229 O HOH A 302 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 338 O HOH B 308 1455 1.80 REMARK 500 O HOH A 416 O HOH B 460 2454 1.99 REMARK 500 O HOH B 301 O HOH B 387 4455 2.03 REMARK 500 OE2 GLU A 160 OG SER B 36 4455 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 181 CA - CB - CG ANGL. DEV. = 14.4 DEGREES REMARK 500 ARG B 247 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 49 -1.68 76.67 REMARK 500 LEU A 92 -141.08 -92.21 REMARK 500 ASP A 94 -63.20 84.69 REMARK 500 LYS A 98 116.95 74.69 REMARK 500 VAL B 15 119.92 83.22 REMARK 500 ASP B 49 7.89 83.07 REMARK 500 ASN B 255 -110.87 -47.26 REMARK 500 REMARK 500 REMARK: NULL DBREF 6IZT A 22 267 UNP P46024 BAMA1_HAEIF 173 418 DBREF 6IZT B 22 267 UNP P46024 BAMA1_HAEIF 173 418 SEQADV 6IZT MET A 1 UNP P46024 INITIATING METHIONINE SEQADV 6IZT GLY A 2 UNP P46024 EXPRESSION TAG SEQADV 6IZT SER A 3 UNP P46024 EXPRESSION TAG SEQADV 6IZT SER A 4 UNP P46024 EXPRESSION TAG SEQADV 6IZT HIS A 5 UNP P46024 EXPRESSION TAG SEQADV 6IZT HIS A 6 UNP P46024 EXPRESSION TAG SEQADV 6IZT HIS A 7 UNP P46024 EXPRESSION TAG SEQADV 6IZT HIS A 8 UNP P46024 EXPRESSION TAG SEQADV 6IZT HIS A 9 UNP P46024 EXPRESSION TAG SEQADV 6IZT HIS A 10 UNP P46024 EXPRESSION TAG SEQADV 6IZT SER A 11 UNP P46024 EXPRESSION TAG SEQADV 6IZT SER A 12 UNP P46024 EXPRESSION TAG SEQADV 6IZT GLY A 13 UNP P46024 EXPRESSION TAG SEQADV 6IZT LEU A 14 UNP P46024 EXPRESSION TAG SEQADV 6IZT VAL A 15 UNP P46024 EXPRESSION TAG SEQADV 6IZT PRO A 16 UNP P46024 EXPRESSION TAG SEQADV 6IZT ARG A 17 UNP P46024 EXPRESSION TAG SEQADV 6IZT GLY A 18 UNP P46024 EXPRESSION TAG SEQADV 6IZT SER A 19 UNP P46024 EXPRESSION TAG SEQADV 6IZT HIS A 20 UNP P46024 EXPRESSION TAG SEQADV 6IZT MET A 21 UNP P46024 EXPRESSION TAG SEQADV 6IZT MET B 1 UNP P46024 INITIATING METHIONINE SEQADV 6IZT GLY B 2 UNP P46024 EXPRESSION TAG SEQADV 6IZT SER B 3 UNP P46024 EXPRESSION TAG SEQADV 6IZT SER B 4 UNP P46024 EXPRESSION TAG SEQADV 6IZT HIS B 5 UNP P46024 EXPRESSION TAG SEQADV 6IZT HIS B 6 UNP P46024 EXPRESSION TAG SEQADV 6IZT HIS B 7 UNP P46024 EXPRESSION TAG SEQADV 6IZT HIS B 8 UNP P46024 EXPRESSION TAG SEQADV 6IZT HIS B 9 UNP P46024 EXPRESSION TAG SEQADV 6IZT HIS B 10 UNP P46024 EXPRESSION TAG SEQADV 6IZT SER B 11 UNP P46024 EXPRESSION TAG SEQADV 6IZT SER B 12 UNP P46024 EXPRESSION TAG SEQADV 6IZT GLY B 13 UNP P46024 EXPRESSION TAG SEQADV 6IZT LEU B 14 UNP P46024 EXPRESSION TAG SEQADV 6IZT VAL B 15 UNP P46024 EXPRESSION TAG SEQADV 6IZT PRO B 16 UNP P46024 EXPRESSION TAG SEQADV 6IZT ARG B 17 UNP P46024 EXPRESSION TAG SEQADV 6IZT GLY B 18 UNP P46024 EXPRESSION TAG SEQADV 6IZT SER B 19 UNP P46024 EXPRESSION TAG SEQADV 6IZT HIS B 20 UNP P46024 EXPRESSION TAG SEQADV 6IZT MET B 21 UNP P46024 EXPRESSION TAG SEQRES 1 A 267 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 267 LEU VAL PRO ARG GLY SER HIS MET ALA LYS LEU ALA SER SEQRES 3 A 267 LEU THR PHE LYS GLY ASN GLU SER VAL SER SER SER THR SEQRES 4 A 267 LEU GLN GLU GLN MET GLU LEU GLN PRO ASP SER TRP TRP SEQRES 5 A 267 LYS LEU TRP GLY ASN LYS PHE GLU GLY ALA GLN PHE GLU SEQRES 6 A 267 LYS ASP LEU GLN SER ILE ARG ASP TYR TYR LEU ASN ASN SEQRES 7 A 267 GLY TYR ALA LYS ALA GLN ILE THR LYS THR ASP VAL GLN SEQRES 8 A 267 LEU ASN ASP GLU LYS THR LYS VAL ASN VAL THR ILE ASP SEQRES 9 A 267 VAL ASN GLU GLY LEU GLN TYR ASP LEU ARG SER ALA ARG SEQRES 10 A 267 ILE ILE GLY ASN LEU GLY GLY MET SER ALA GLU LEU GLU SEQRES 11 A 267 PRO LEU LEU SER ALA LEU HIS LEU ASN ASP THR PHE ARG SEQRES 12 A 267 ARG SER ASP ILE ALA ASP VAL GLU ASN ALA ILE LYS ALA SEQRES 13 A 267 LYS LEU GLY GLU ARG GLY TYR GLY SER ALA THR VAL ASN SEQRES 14 A 267 SER VAL PRO ASP PHE ASP ASP ALA ASN LYS THR LEU ALA SEQRES 15 A 267 ILE THR LEU VAL VAL ASP ALA GLY ARG ARG LEU THR VAL SEQRES 16 A 267 ARG GLN LEU ARG PHE GLU GLY ASN THR VAL SER ALA ASP SEQRES 17 A 267 SER THR LEU ARG GLN GLU MET ARG GLN GLN GLU GLY THR SEQRES 18 A 267 TRP TYR ASN SER GLN LEU VAL GLU LEU GLY LYS ILE ARG SEQRES 19 A 267 LEU ASP ARG THR GLY PHE PHE GLU THR VAL GLU ASN ARG SEQRES 20 A 267 ILE ASP PRO ILE ASN GLY SER ASN ASP GLU VAL ASP VAL SEQRES 21 A 267 VAL TYR LYS VAL LYS GLU ARG SEQRES 1 B 267 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 267 LEU VAL PRO ARG GLY SER HIS MET ALA LYS LEU ALA SER SEQRES 3 B 267 LEU THR PHE LYS GLY ASN GLU SER VAL SER SER SER THR SEQRES 4 B 267 LEU GLN GLU GLN MET GLU LEU GLN PRO ASP SER TRP TRP SEQRES 5 B 267 LYS LEU TRP GLY ASN LYS PHE GLU GLY ALA GLN PHE GLU SEQRES 6 B 267 LYS ASP LEU GLN SER ILE ARG ASP TYR TYR LEU ASN ASN SEQRES 7 B 267 GLY TYR ALA LYS ALA GLN ILE THR LYS THR ASP VAL GLN SEQRES 8 B 267 LEU ASN ASP GLU LYS THR LYS VAL ASN VAL THR ILE ASP SEQRES 9 B 267 VAL ASN GLU GLY LEU GLN TYR ASP LEU ARG SER ALA ARG SEQRES 10 B 267 ILE ILE GLY ASN LEU GLY GLY MET SER ALA GLU LEU GLU SEQRES 11 B 267 PRO LEU LEU SER ALA LEU HIS LEU ASN ASP THR PHE ARG SEQRES 12 B 267 ARG SER ASP ILE ALA ASP VAL GLU ASN ALA ILE LYS ALA SEQRES 13 B 267 LYS LEU GLY GLU ARG GLY TYR GLY SER ALA THR VAL ASN SEQRES 14 B 267 SER VAL PRO ASP PHE ASP ASP ALA ASN LYS THR LEU ALA SEQRES 15 B 267 ILE THR LEU VAL VAL ASP ALA GLY ARG ARG LEU THR VAL SEQRES 16 B 267 ARG GLN LEU ARG PHE GLU GLY ASN THR VAL SER ALA ASP SEQRES 17 B 267 SER THR LEU ARG GLN GLU MET ARG GLN GLN GLU GLY THR SEQRES 18 B 267 TRP TYR ASN SER GLN LEU VAL GLU LEU GLY LYS ILE ARG SEQRES 19 B 267 LEU ASP ARG THR GLY PHE PHE GLU THR VAL GLU ASN ARG SEQRES 20 B 267 ILE ASP PRO ILE ASN GLY SER ASN ASP GLU VAL ASP VAL SEQRES 21 B 267 VAL TYR LYS VAL LYS GLU ARG FORMUL 3 HOH *363(H2 O) HELIX 1 AA1 SER A 36 GLN A 43 1 8 HELIX 2 AA2 GLU A 60 ASN A 78 1 19 HELIX 3 AA3 MET A 125 GLU A 130 1 6 HELIX 4 AA4 PRO A 131 LEU A 136 5 6 HELIX 5 AA5 ARG A 143 GLU A 160 1 18 HELIX 6 AA6 ALA A 207 MET A 215 1 9 HELIX 7 AA7 ASN A 224 ARG A 237 1 14 HELIX 8 AA8 SER B 36 GLN B 43 1 8 HELIX 9 AA9 GLY B 61 ASN B 78 1 18 HELIX 10 AB1 MET B 125 GLU B 130 1 6 HELIX 11 AB2 PRO B 131 LEU B 136 5 6 HELIX 12 AB3 ARG B 143 ARG B 161 1 19 HELIX 13 AB4 ALA B 207 GLU B 214 1 8 HELIX 14 AB5 ASN B 224 GLY B 239 1 16 SHEET 1 AA1 5 LYS A 58 PHE A 59 0 SHEET 2 AA1 5 TRP A 51 TRP A 55 -1 N TRP A 55 O LYS A 58 SHEET 3 AA1 5 HIS A 20 LYS A 30 -1 N HIS A 20 O LEU A 54 SHEET 4 AA1 5 VAL A 99 ASN A 106 1 O VAL A 105 N LYS A 30 SHEET 5 AA1 5 GLN A 84 GLN A 91 -1 N LYS A 87 O ASP A 104 SHEET 1 AA2 4 ASP A 140 THR A 141 0 SHEET 2 AA2 4 ASP A 112 ASN A 121 -1 N LEU A 113 O ASP A 140 SHEET 3 AA2 4 THR A 180 ASP A 188 1 O LEU A 185 N ARG A 117 SHEET 4 AA2 4 THR A 167 ASP A 175 -1 N ASN A 169 O VAL A 186 SHEET 1 AA3 4 THR A 221 TRP A 222 0 SHEET 2 AA3 4 THR A 194 GLU A 201 -1 N VAL A 195 O THR A 221 SHEET 3 AA3 4 GLU A 257 LYS A 265 1 O VAL A 258 N ARG A 196 SHEET 4 AA3 4 THR A 243 PRO A 250 -1 N ASP A 249 O ASP A 259 SHEET 1 AA4 5 LYS B 58 PHE B 59 0 SHEET 2 AA4 5 TRP B 51 TRP B 55 -1 N TRP B 55 O LYS B 58 SHEET 3 AA4 5 HIS B 20 LYS B 30 -1 N HIS B 20 O LEU B 54 SHEET 4 AA4 5 LYS B 98 ASN B 106 1 O VAL B 99 N ALA B 25 SHEET 5 AA4 5 GLN B 84 LEU B 92 -1 N GLN B 91 O ASN B 100 SHEET 1 AA5 4 ASP B 140 THR B 141 0 SHEET 2 AA5 4 ASP B 112 ASN B 121 -1 N LEU B 113 O ASP B 140 SHEET 3 AA5 4 THR B 180 ASP B 188 1 O LEU B 185 N ARG B 117 SHEET 4 AA5 4 THR B 167 ASP B 175 -1 N ASN B 169 O VAL B 186 SHEET 1 AA6 3 THR B 194 GLU B 201 0 SHEET 2 AA6 3 GLU B 257 VAL B 264 1 O VAL B 258 N ARG B 196 SHEET 3 AA6 3 VAL B 244 PRO B 250 -1 N GLU B 245 O LYS B 263 CRYST1 62.680 89.900 110.180 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015954 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011123 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009076 0.00000