HEADER TRANSCRIPTION 21-DEC-18 6J05 TITLE STRUCTURES OF TWO ARSR AS(III)-RESPONSIVE REPRESSORS: IMPLICATIONS FOR TITLE 2 THE MECHANISM OF DEREPRESSION COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR ARSR; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACIDITHIOBACILLUS FERROOXIDANS; SOURCE 3 ORGANISM_COMMON: THIOBACILLUS FERROOXIDANS; SOURCE 4 ORGANISM_TAXID: 920; SOURCE 5 GENE: DN052_10610; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: TOP10; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PBAD KEYWDS ARSR, AS-III COMPLEX, REPRESSOR, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR C.PRABAHARAN,P.KANDAVELU,C.PACKIANATHAN,P.B.ROSEN,S.THIYAGARAJAN REVDAT 4 22-NOV-23 6J05 1 REMARK REVDAT 3 23-MAR-22 6J05 1 LINK REVDAT 2 07-AUG-19 6J05 1 JRNL REVDAT 1 03-JUL-19 6J05 0 JRNL AUTH C.PRABAHARAN,P.KANDAVELU,C.PACKIANATHAN,B.P.ROSEN, JRNL AUTH 2 S.THIYAGARAJAN JRNL TITL STRUCTURES OF TWO ARSR AS(III)-RESPONSIVE TRANSCRIPTIONAL JRNL TITL 2 REPRESSORS: IMPLICATIONS FOR THE MECHANISM OF DEREPRESSION. JRNL REF J.STRUCT.BIOL. V. 207 209 2019 JRNL REFN ESSN 1095-8657 JRNL PMID 31136796 JRNL DOI 10.1016/J.JSB.2019.05.009 REMARK 2 REMARK 2 RESOLUTION. 1.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.53 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 3 NUMBER OF REFLECTIONS : 13065 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 698 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.86 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.91 REMARK 3 REFLECTION IN BIN (WORKING SET) : 860 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 83.94 REMARK 3 BIN R VALUE (WORKING SET) : 0.2310 REMARK 3 BIN FREE R VALUE SET COUNT : 39 REMARK 3 BIN FREE R VALUE : 0.3260 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1485 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.03000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.03000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.160 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.158 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.099 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.304 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1546 ; 0.030 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1470 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2096 ; 2.416 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3381 ; 1.258 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 195 ; 6.200 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 76 ;39.292 ;22.763 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 257 ;14.551 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;17.479 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 239 ; 0.153 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1736 ; 0.014 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 318 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 774 ; 1.765 ; 1.849 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 773 ; 1.754 ; 1.847 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 968 ; 2.640 ; 2.747 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 969 ; 2.640 ; 2.750 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 772 ; 2.113 ; 2.124 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 770 ; 2.106 ; 2.120 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1127 ; 3.200 ; 3.104 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1763 ; 5.367 ;22.883 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1741 ; 5.355 ;22.615 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 105 REMARK 3 ORIGIN FOR THE GROUP (A): 6.5725 9.4648 12.1428 REMARK 3 T TENSOR REMARK 3 T11: 0.0726 T22: 0.0487 REMARK 3 T33: 0.0436 T12: 0.0018 REMARK 3 T13: -0.0182 T23: 0.0016 REMARK 3 L TENSOR REMARK 3 L11: 0.3822 L22: 0.0215 REMARK 3 L33: 0.6484 L12: 0.0553 REMARK 3 L13: 0.4792 L23: 0.0771 REMARK 3 S TENSOR REMARK 3 S11: -0.0075 S12: 0.0279 S13: -0.0255 REMARK 3 S21: 0.0248 S22: 0.0143 S23: -0.0012 REMARK 3 S31: -0.0046 S32: 0.0052 S33: -0.0068 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4 B 93 REMARK 3 ORIGIN FOR THE GROUP (A): -13.8841 -0.1130 8.0363 REMARK 3 T TENSOR REMARK 3 T11: 0.0693 T22: 0.1109 REMARK 3 T33: 0.0038 T12: -0.0139 REMARK 3 T13: 0.0114 T23: -0.0169 REMARK 3 L TENSOR REMARK 3 L11: 1.2693 L22: 0.2258 REMARK 3 L33: 0.0415 L12: 0.5072 REMARK 3 L13: 0.2130 L23: 0.0763 REMARK 3 S TENSOR REMARK 3 S11: 0.0858 S12: -0.1421 S13: 0.0333 REMARK 3 S21: 0.0090 S22: -0.0915 S23: 0.0141 REMARK 3 S31: 0.0337 S32: -0.0224 S33: 0.0057 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6J05 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1300010237. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : 7.0-7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5414 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOMAR REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13774 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.860 REMARK 200 RESOLUTION RANGE LOW (A) : 43.530 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 200 DATA REDUNDANCY : 4.040 REMARK 200 R MERGE (I) : 0.07290 REMARK 200 R SYM (I) : 0.07290 REMARK 200 FOR THE DATA SET : 7.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.86 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.88 REMARK 200 R MERGE FOR SHELL (I) : 0.39000 REMARK 200 R SYM FOR SHELL (I) : 0.39000 REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1R1T REMARK 200 REMARK 200 REMARK: CUBOIDAL RODS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 21.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1% TRYPTONE, 20% PEG 3350, PH 7.5, REMARK 280 MICROBATCH, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 21.36350 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 PRO A 3 REMARK 465 LEU A 4 REMARK 465 GLY A 106 REMARK 465 GLU A 107 REMARK 465 THR A 108 REMARK 465 ARG A 109 REMARK 465 SER A 110 REMARK 465 PRO A 111 REMARK 465 SER A 112 REMARK 465 VAL A 113 REMARK 465 GLN A 114 REMARK 465 GLU A 115 REMARK 465 GLY A 116 REMARK 465 ASN A 117 REMARK 465 GLN A 118 REMARK 465 HIS A 119 REMARK 465 HIS A 120 REMARK 465 HIS A 121 REMARK 465 HIS A 122 REMARK 465 HIS A 123 REMARK 465 HIS A 124 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 PRO B 3 REMARK 465 ASN B 94 REMARK 465 CYS B 95 REMARK 465 CYS B 96 REMARK 465 HIS B 97 REMARK 465 GLY B 98 REMARK 465 THR B 99 REMARK 465 ARG B 100 REMARK 465 ASP B 101 REMARK 465 CYS B 102 REMARK 465 ALA B 103 REMARK 465 LEU B 104 REMARK 465 SER B 105 REMARK 465 GLY B 106 REMARK 465 GLU B 107 REMARK 465 THR B 108 REMARK 465 ARG B 109 REMARK 465 SER B 110 REMARK 465 PRO B 111 REMARK 465 SER B 112 REMARK 465 VAL B 113 REMARK 465 GLN B 114 REMARK 465 GLU B 115 REMARK 465 GLY B 116 REMARK 465 ASN B 117 REMARK 465 GLN B 118 REMARK 465 HIS B 119 REMARK 465 HIS B 120 REMARK 465 HIS B 121 REMARK 465 HIS B 122 REMARK 465 HIS B 123 REMARK 465 HIS B 124 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 70 CG CD NE CZ NH1 NH2 REMARK 470 SER A 105 CB OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 24 CD GLU A 24 OE2 -0.100 REMARK 500 GLY A 52 N GLY A 52 CA 0.090 REMARK 500 TYR A 90 CB TYR A 90 CG -0.100 REMARK 500 TYR A 90 CG TYR A 90 CD2 0.085 REMARK 500 SER B 39 CB SER B 39 OG -0.089 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 76 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 VAL A 84 CA - CB - CG1 ANGL. DEV. = -9.4 DEGREES REMARK 500 ARG A 85 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 LEU A 87 CB - CG - CD1 ANGL. DEV. = -10.5 DEGREES REMARK 500 ARG A 100 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ASP B 6 CB - CG - OD2 ANGL. DEV. = -7.4 DEGREES REMARK 500 ARG B 13 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG B 85 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 ARG B 85 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 71 68.79 -153.33 REMARK 500 ARG A 73 -59.96 -28.28 REMARK 500 ALA B 18 47.40 -78.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 202 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 29 O REMARK 620 2 GLU A 33 OE1 112.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 202 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 361 O REMARK 620 2 GLU B 24 OE1 113.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 201 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU B 29 O REMARK 620 2 GLU B 33 OE2 114.4 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ARS A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 202 DBREF1 6J05 A 1 118 UNP A0A2W1K2S1_ACIFR DBREF2 6J05 A A0A2W1K2S1 1 118 DBREF1 6J05 B 1 118 UNP A0A2W1K2S1_ACIFR DBREF2 6J05 B A0A2W1K2S1 1 118 SEQADV 6J05 HIS A 119 UNP A0A2W1K2S EXPRESSION TAG SEQADV 6J05 HIS A 120 UNP A0A2W1K2S EXPRESSION TAG SEQADV 6J05 HIS A 121 UNP A0A2W1K2S EXPRESSION TAG SEQADV 6J05 HIS A 122 UNP A0A2W1K2S EXPRESSION TAG SEQADV 6J05 HIS A 123 UNP A0A2W1K2S EXPRESSION TAG SEQADV 6J05 HIS A 124 UNP A0A2W1K2S EXPRESSION TAG SEQADV 6J05 HIS B 119 UNP A0A2W1K2S EXPRESSION TAG SEQADV 6J05 HIS B 120 UNP A0A2W1K2S EXPRESSION TAG SEQADV 6J05 HIS B 121 UNP A0A2W1K2S EXPRESSION TAG SEQADV 6J05 HIS B 122 UNP A0A2W1K2S EXPRESSION TAG SEQADV 6J05 HIS B 123 UNP A0A2W1K2S EXPRESSION TAG SEQADV 6J05 HIS B 124 UNP A0A2W1K2S EXPRESSION TAG SEQRES 1 A 124 MET GLU PRO LEU GLN ASP PRO ALA GLN ILE VAL ALA ARG SEQRES 2 A 124 LEU GLU ALA LEU ALA SER PRO VAL ARG LEU GLU ILE PHE SEQRES 3 A 124 ARG LEU LEU VAL GLU GLN GLU PRO THR GLY LEU VAL SER SEQRES 4 A 124 GLY ASP ILE ALA GLU HIS LEU GLY GLN PRO HIS ASN GLY SEQRES 5 A 124 ILE SER PHE HIS LEU LYS ASN LEU GLN HIS ALA GLY LEU SEQRES 6 A 124 VAL THR VAL GLN ARG GLU GLY ARG TYR GLN ARG TYR ARG SEQRES 7 A 124 ALA ALA MET PRO VAL VAL ARG ALA LEU VAL ALA TYR LEU SEQRES 8 A 124 THR GLU ASN CYS CYS HIS GLY THR ARG ASP CYS ALA LEU SEQRES 9 A 124 SER GLY GLU THR ARG SER PRO SER VAL GLN GLU GLY ASN SEQRES 10 A 124 GLN HIS HIS HIS HIS HIS HIS SEQRES 1 B 124 MET GLU PRO LEU GLN ASP PRO ALA GLN ILE VAL ALA ARG SEQRES 2 B 124 LEU GLU ALA LEU ALA SER PRO VAL ARG LEU GLU ILE PHE SEQRES 3 B 124 ARG LEU LEU VAL GLU GLN GLU PRO THR GLY LEU VAL SER SEQRES 4 B 124 GLY ASP ILE ALA GLU HIS LEU GLY GLN PRO HIS ASN GLY SEQRES 5 B 124 ILE SER PHE HIS LEU LYS ASN LEU GLN HIS ALA GLY LEU SEQRES 6 B 124 VAL THR VAL GLN ARG GLU GLY ARG TYR GLN ARG TYR ARG SEQRES 7 B 124 ALA ALA MET PRO VAL VAL ARG ALA LEU VAL ALA TYR LEU SEQRES 8 B 124 THR GLU ASN CYS CYS HIS GLY THR ARG ASP CYS ALA LEU SEQRES 9 B 124 SER GLY GLU THR ARG SER PRO SER VAL GLN GLU GLY ASN SEQRES 10 B 124 GLN HIS HIS HIS HIS HIS HIS HET ARS A 201 1 HET NA A 202 1 HET NA B 201 1 HET NA B 202 1 HETNAM ARS ARSENIC HETNAM NA SODIUM ION FORMUL 3 ARS AS FORMUL 4 NA 3(NA 1+) FORMUL 7 HOH *120(H2 O) HELIX 1 AA1 ASP A 6 ALA A 18 1 13 HELIX 2 AA2 SER A 19 GLN A 32 1 14 HELIX 3 AA3 SER A 39 GLY A 47 1 9 HELIX 4 AA4 PRO A 49 ALA A 63 1 15 HELIX 5 AA5 ALA A 80 THR A 92 1 13 HELIX 6 AA6 ASP B 6 ALA B 18 1 13 HELIX 7 AA7 SER B 19 GLN B 32 1 14 HELIX 8 AA8 VAL B 38 GLY B 47 1 10 HELIX 9 AA9 PRO B 49 ALA B 63 1 15 HELIX 10 AB1 ALA B 80 GLU B 93 1 14 SHEET 1 AA1 3 LEU A 37 VAL A 38 0 SHEET 2 AA1 3 TYR A 74 ALA A 79 -1 O TYR A 77 N LEU A 37 SHEET 3 AA1 3 VAL A 66 GLU A 71 -1 N GLN A 69 O ARG A 76 SHEET 1 AA2 2 VAL B 66 GLU B 71 0 SHEET 2 AA2 2 TYR B 74 ALA B 79 -1 O ARG B 76 N GLN B 69 LINK O LEU A 29 NA NA A 202 1555 1555 2.71 LINK OE1 GLU A 33 NA NA A 202 1555 1555 2.61 LINK O HOH A 361 NA NA B 202 1555 1555 2.49 LINK OE1 GLU B 24 NA NA B 202 1555 1555 2.71 LINK O LEU B 29 NA NA B 201 1555 1555 2.67 LINK OE2 GLU B 33 NA NA B 201 1555 1555 2.85 CISPEP 1 GLU A 33 PRO A 34 0 -0.64 CISPEP 2 GLU B 33 PRO B 34 0 -2.49 SITE 1 AC1 3 CYS A 95 CYS A 96 CYS A 102 SITE 1 AC2 5 LEU A 29 GLU A 33 GLY A 36 ARG A 78 SITE 2 AC2 5 ALA A 79 SITE 1 AC3 6 LEU B 29 GLN B 32 GLU B 33 GLY B 36 SITE 2 AC3 6 ARG B 78 ALA B 79 SITE 1 AC4 3 HOH A 361 GLU B 24 ARG B 27 CRYST1 46.922 42.727 49.132 90.00 117.62 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021312 0.000000 0.011151 0.00000 SCALE2 0.000000 0.023404 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022971 0.00000