data_6J0H # _entry.id 6J0H # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.398 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6J0H pdb_00006j0h 10.2210/pdb6j0h/pdb WWPDB D_1300010252 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-07-24 2 'Structure model' 1 1 2019-08-21 3 'Structure model' 1 2 2019-10-30 4 'Structure model' 1 3 2022-03-09 5 'Structure model' 2 0 2023-11-15 6 'Structure model' 3 0 2024-07-10 7 'Structure model' 3 1 2024-11-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Derived calculations' 7 5 'Structure model' Advisory 8 5 'Structure model' 'Atomic model' 9 5 'Structure model' 'Data collection' 10 5 'Structure model' 'Derived calculations' 11 6 'Structure model' 'Data collection' 12 6 'Structure model' 'Derived calculations' 13 6 'Structure model' 'Non-polymer description' 14 6 'Structure model' 'Structure summary' 15 7 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' citation 4 4 'Structure model' database_2 5 4 'Structure model' pdbx_struct_assembly 6 4 'Structure model' pdbx_struct_assembly_gen 7 4 'Structure model' pdbx_struct_conn_angle 8 4 'Structure model' struct_conn 9 4 'Structure model' struct_conn_type 10 5 'Structure model' atom_site 11 5 'Structure model' atom_site_anisotrop 12 5 'Structure model' chem_comp_atom 13 5 'Structure model' chem_comp_bond 14 5 'Structure model' pdbx_validate_close_contact 15 5 'Structure model' struct_conn 16 6 'Structure model' chem_comp 17 6 'Structure model' chem_comp_atom 18 6 'Structure model' chem_comp_bond 19 6 'Structure model' entity 20 6 'Structure model' struct_conn 21 7 'Structure model' pdbx_entry_details 22 7 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_ASTM' 4 2 'Structure model' '_citation.journal_id_CSD' 5 2 'Structure model' '_citation.journal_id_ISSN' 6 2 'Structure model' '_citation.pdbx_database_id_DOI' 7 2 'Structure model' '_citation.pdbx_database_id_PubMed' 8 2 'Structure model' '_citation.title' 9 2 'Structure model' '_citation.year' 10 3 'Structure model' '_citation.journal_volume' 11 3 'Structure model' '_citation.page_first' 12 3 'Structure model' '_citation.page_last' 13 4 'Structure model' '_database_2.pdbx_DOI' 14 4 'Structure model' '_database_2.pdbx_database_accession' 15 4 'Structure model' '_pdbx_struct_assembly.oligomeric_count' 16 4 'Structure model' '_pdbx_struct_assembly.oligomeric_details' 17 4 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 18 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 19 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 20 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 21 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 22 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 23 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 24 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 25 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 26 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 27 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 28 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 29 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 30 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 31 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 32 4 'Structure model' '_pdbx_struct_conn_angle.value' 33 4 'Structure model' '_struct_conn.conn_type_id' 34 4 'Structure model' '_struct_conn.id' 35 4 'Structure model' '_struct_conn.pdbx_dist_value' 36 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 37 4 'Structure model' '_struct_conn.pdbx_value_order' 38 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 39 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 40 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 41 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 42 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 43 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 44 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 45 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 46 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 47 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 48 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 49 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 50 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 51 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 52 4 'Structure model' '_struct_conn.ptnr2_symmetry' 53 4 'Structure model' '_struct_conn_type.id' 54 5 'Structure model' '_atom_site.auth_atom_id' 55 5 'Structure model' '_atom_site.label_atom_id' 56 5 'Structure model' '_atom_site_anisotrop.pdbx_auth_atom_id' 57 5 'Structure model' '_atom_site_anisotrop.pdbx_label_atom_id' 58 5 'Structure model' '_pdbx_validate_close_contact.auth_atom_id_2' 59 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 60 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 61 6 'Structure model' '_chem_comp.formula' 62 6 'Structure model' '_chem_comp.formula_weight' 63 6 'Structure model' '_entity.formula_weight' 64 6 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 65 7 'Structure model' '_pdbx_entry_details.has_protein_modification' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6J0H _pdbx_database_status.recvd_initial_deposition_date 2018-12-24 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Satange, R.B.' 1 ? 'Hou, M.H.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 47 _citation.language ? _citation.page_first 8899 _citation.page_last 8912 _citation.title 'Polymorphic G:G mismatches act as hotspots for inducing right-handed Z DNA by DNA intercalation.' _citation.year 2019 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/nar/gkz653 _citation.pdbx_database_id_PubMed 31361900 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Satange, R.' 1 ? primary 'Chuang, C.Y.' 2 ? primary 'Neidle, S.' 3 ? primary 'Hou, M.H.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(P*TP*TP*GP*GP*CP*GP*AP*A)-3') ; 2466.641 1 ? ? ? ? 2 polymer syn 'Actinomycin D' 1291.446 1 ? ? ? ? 3 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 4 water nat water 18.015 57 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DT)(DT)(DG)(DG)(DC)(DG)(DA)(DA)' TTGGCGAA A ? 2 'polypeptide(L)' no yes 'T(DVA)P(SAR)(MVA)(PXZ)T(DVA)P(SAR)(MVA)' TVPGVXTVPGV B ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'SODIUM ION' NA 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DT n 1 3 DG n 1 4 DG n 1 5 DC n 1 6 DG n 1 7 DA n 1 8 DA n 2 1 THR n 2 2 DVA n 2 3 PRO n 2 4 SAR n 2 5 MVA n 2 6 PXZ n 2 7 THR n 2 8 DVA n 2 9 PRO n 2 10 SAR n 2 11 MVA n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample 1 8 'synthetic construct' ? 32630 ? 2 1 sample 1 11 'Streptomyces sp.' ? 1931 ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 DVA 'D-peptide linking' . D-VALINE ? 'C5 H11 N O2' 117.146 HOH non-polymer . WATER ? 'H2 O' 18.015 MVA 'L-peptide linking' n N-METHYLVALINE ? 'C6 H13 N O2' 131.173 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 PXZ non-polymer . 2-AMINO-1,9-DICARBONYL-4,6-DIMETHYL-10-DEHYDRO-PHENOXAZIN-3-ONE PHENOXAZINE 'C16 H12 N2 O6' 328.276 SAR 'peptide linking' n SARCOSINE ? 'C3 H7 N O2' 89.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 1 1 DT DT A . n A 1 2 DT 2 2 2 DT DT A . n A 1 3 DG 3 3 3 DG DG A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 DC 5 5 5 DC DC A . n A 1 6 DG 6 6 6 DG DG A . n A 1 7 DA 7 7 7 DA DA A . n A 1 8 DA 8 8 8 DA DA A . n B 2 1 THR 1 1 1 THR THR B . n B 2 2 DVA 2 2 2 DVA DVA B . n B 2 3 PRO 3 3 3 PRO PRO B . n B 2 4 SAR 4 4 4 SAR SAR B . n B 2 5 MVA 5 5 5 MVA MVA B . n B 2 6 PXZ 6 6 6 PXZ PXZ B . n B 2 7 THR 7 7 7 THR THR B . n B 2 8 DVA 8 8 8 DVA DVA B . n B 2 9 PRO 9 9 9 PRO PRO B . n B 2 10 SAR 10 10 10 SAR SAR B . n B 2 11 MVA 11 11 11 MVA MVA B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NA 1 101 1 NA NA A . D 4 HOH 1 201 45 HOH HOH A . D 4 HOH 2 202 50 HOH HOH A . D 4 HOH 3 203 28 HOH HOH A . D 4 HOH 4 204 13 HOH HOH A . D 4 HOH 5 205 91 HOH HOH A . D 4 HOH 6 206 18 HOH HOH A . D 4 HOH 7 207 16 HOH HOH A . D 4 HOH 8 208 38 HOH HOH A . D 4 HOH 9 209 34 HOH HOH A . D 4 HOH 10 210 21 HOH HOH A . D 4 HOH 11 211 112 HOH HOH A . D 4 HOH 12 212 14 HOH HOH A . D 4 HOH 13 213 15 HOH HOH A . D 4 HOH 14 214 82 HOH HOH A . D 4 HOH 15 215 30 HOH HOH A . D 4 HOH 16 216 92 HOH HOH A . D 4 HOH 17 217 22 HOH HOH A . D 4 HOH 18 218 48 HOH HOH A . D 4 HOH 19 219 46 HOH HOH A . D 4 HOH 20 220 41 HOH HOH A . D 4 HOH 21 221 98 HOH HOH A . D 4 HOH 22 222 88 HOH HOH A . D 4 HOH 23 223 42 HOH HOH A . D 4 HOH 24 224 43 HOH HOH A . D 4 HOH 25 225 23 HOH HOH A . D 4 HOH 26 226 59 HOH HOH A . D 4 HOH 27 227 105 HOH HOH A . D 4 HOH 28 228 101 HOH HOH A . D 4 HOH 29 229 25 HOH HOH A . D 4 HOH 30 230 32 HOH HOH A . D 4 HOH 31 231 26 HOH HOH A . D 4 HOH 32 232 62 HOH HOH A . D 4 HOH 33 233 37 HOH HOH A . D 4 HOH 34 234 52 HOH HOH A . D 4 HOH 35 235 51 HOH HOH A . D 4 HOH 36 236 39 HOH HOH A . D 4 HOH 37 237 47 HOH HOH A . D 4 HOH 38 238 108 HOH HOH A . D 4 HOH 39 239 31 HOH HOH A . D 4 HOH 40 240 40 HOH HOH A . D 4 HOH 41 241 63 HOH HOH A . D 4 HOH 42 242 36 HOH HOH A . D 4 HOH 43 243 54 HOH HOH A . E 4 HOH 1 101 24 HOH HOH B . E 4 HOH 2 102 17 HOH HOH B . E 4 HOH 3 103 20 HOH HOH B . E 4 HOH 4 104 56 HOH HOH B . E 4 HOH 5 105 29 HOH HOH B . E 4 HOH 6 106 19 HOH HOH B . E 4 HOH 7 107 27 HOH HOH B . E 4 HOH 8 108 33 HOH HOH B . E 4 HOH 9 109 77 HOH HOH B . E 4 HOH 10 110 53 HOH HOH B . E 4 HOH 11 111 86 HOH HOH B . E 4 HOH 12 112 71 HOH HOH B . E 4 HOH 13 113 70 HOH HOH B . E 4 HOH 14 114 35 HOH HOH B . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.10.1_2155 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? . 3 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.10.1_2155 5 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 6J0H _cell.details ? _cell.formula_units_Z ? _cell.length_a 59.500 _cell.length_a_esd ? _cell.length_b 59.500 _cell.length_b_esd ? _cell.length_c 93.489 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 16 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6J0H _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6J0H _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 5.55 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 77.84 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 277.15 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '1.5M Sodium malonate, 100mM lithium chloride, 10mM Manganese(II) chloride, 10mM MES (pH 6.5)' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'Bruker DIP-6040' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2017-12-04 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.90000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SPRING-8 BEAMLINE BL44XU' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.90000 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL44XU _diffrn_source.pdbx_synchrotron_site SPring-8 # _reflns.B_iso_Wilson_estimate 21.640 _reflns.entry_id 6J0H _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.520 _reflns.d_resolution_low 30.000 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 13248 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.800 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 13.000 _reflns.pdbx_Rmerge_I_obs 0.116 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 8.500 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 1.060 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.121 _reflns.pdbx_Rpim_I_all 0.035 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 172564 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split 1.520 1.570 ? ? ? ? ? ? 1298 100.000 ? ? ? ? 2.680 ? ? ? ? ? ? ? ? 12.200 ? 1.097 ? ? 2.796 0.790 ? 1 1 0.762 ? 1.570 1.640 ? ? ? ? ? ? 1295 100.000 ? ? ? ? 1.739 ? ? ? ? ? ? ? ? 13.500 ? 1.094 ? ? 1.807 0.489 ? 2 1 0.899 ? 1.640 1.710 ? ? ? ? ? ? 1299 100.000 ? ? ? ? 1.054 ? ? ? ? ? ? ? ? 14.100 ? 1.074 ? ? 1.094 0.290 ? 3 1 0.966 ? 1.710 1.800 ? ? ? ? ? ? 1311 100.000 ? ? ? ? 0.901 ? ? ? ? ? ? ? ? 14.200 ? 1.075 ? ? 0.935 0.247 ? 4 1 0.963 ? 1.800 1.910 ? ? ? ? ? ? 1313 100.000 ? ? ? ? 0.554 ? ? ? ? ? ? ? ? 14.100 ? 1.035 ? ? 0.575 0.153 ? 5 1 0.981 ? 1.910 2.060 ? ? ? ? ? ? 1306 100.000 ? ? ? ? 0.311 ? ? ? ? ? ? ? ? 13.800 ? 1.079 ? ? 0.324 0.087 ? 6 1 0.992 ? 2.060 2.270 ? ? ? ? ? ? 1321 100.000 ? ? ? ? 0.192 ? ? ? ? ? ? ? ? 13.700 ? 1.086 ? ? 0.200 0.054 ? 7 1 0.995 ? 2.270 2.600 ? ? ? ? ? ? 1340 100.000 ? ? ? ? 0.131 ? ? ? ? ? ? ? ? 13.200 ? 1.042 ? ? 0.136 0.038 ? 8 1 0.996 ? 2.600 3.270 ? ? ? ? ? ? 1353 100.000 ? ? ? ? 0.065 ? ? ? ? ? ? ? ? 12.800 ? 1.011 ? ? 0.068 0.020 ? 9 1 0.998 ? 3.270 30.000 ? ? ? ? ? ? 1412 98.000 ? ? ? ? 0.042 ? ? ? ? ? ? ? ? 8.900 ? 0.984 ? ? 0.045 0.015 ? 10 1 0.999 ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 108.380 _refine.B_iso_mean 32.4932 _refine.B_iso_min 17.360 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6J0H _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.5200 _refine.ls_d_res_low 27.6060 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 13233 _refine.ls_number_reflns_R_free 1324 _refine.ls_number_reflns_R_work 11909 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.4800 _refine.ls_percent_reflns_R_free 10.0100 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2098 _refine.ls_R_factor_R_free 0.2158 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2091 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.350 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 23.1800 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.1500 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 1.5200 _refine_hist.d_res_low 27.6060 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 58 _refine_hist.number_atoms_total 316 _refine_hist.pdbx_number_residues_total 19 _refine_hist.pdbx_B_iso_mean_ligand 40.39 _refine_hist.pdbx_B_iso_mean_solvent 45.83 _refine_hist.pdbx_number_atoms_protein 90 _refine_hist.pdbx_number_atoms_nucleic_acid 167 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.043 ? 279 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 2.868 ? 419 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.279 ? 44 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.018 ? 23 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 36.597 ? 97 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.5199 1.5807 1407 . 140 1267 97.0000 . . . 0.3020 0.0000 0.2887 . . . . . . 9 . . . 'X-RAY DIFFRACTION' 1.5807 1.6526 1452 . 146 1306 100.0000 . . . 0.2645 0.0000 0.2391 . . . . . . 9 . . . 'X-RAY DIFFRACTION' 1.6526 1.7398 1442 . 144 1298 100.0000 . . . 0.2797 0.0000 0.2357 . . . . . . 9 . . . 'X-RAY DIFFRACTION' 1.7398 1.8487 1464 . 147 1317 100.0000 . . . 0.2598 0.0000 0.2509 . . . . . . 9 . . . 'X-RAY DIFFRACTION' 1.8487 1.9914 1448 . 144 1304 100.0000 . . . 0.2781 0.0000 0.2466 . . . . . . 9 . . . 'X-RAY DIFFRACTION' 1.9914 2.1918 1474 . 148 1326 100.0000 . . . 0.2282 0.0000 0.2437 . . . . . . 9 . . . 'X-RAY DIFFRACTION' 2.1918 2.5087 1478 . 147 1331 100.0000 . . . 0.2685 0.0000 0.2472 . . . . . . 9 . . . 'X-RAY DIFFRACTION' 2.5087 3.1600 1503 . 151 1352 100.0000 . . . 0.2550 0.0000 0.2348 . . . . . . 9 . . . 'X-RAY DIFFRACTION' 3.1600 27.6104 1565 . 157 1408 98.0000 . . . 0.1539 0.0000 0.1589 . . . . . . 9 . . . # _struct.entry_id 6J0H _struct.title 'Crystal structure of Actinomycin D- d(TTGGCGAA) complex' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6J0H _struct_keywords.text 'Mismatch DNA, Actinomycin D, Drug-DNA complex, Base flip out, DNA kink, DNA-ANTIBIOTIC complex' _struct_keywords.pdbx_keywords DNA/ANTIBIOTIC # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 6J0H 6J0H ? 1 ? 1 2 PDB 6J0H 6J0H ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6J0H A 1 ? 8 ? 6J0H 1 ? 8 ? 1 8 2 2 6J0H B 1 ? 11 ? 6J0H 1 ? 11 ? 1 11 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D,E 1 2 A,B,C,D,E # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 6_545 x,-y-1/2,-z+1/4 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 -29.7500000000 0.0000000000 0.0000000000 -1.0000000000 23.3722500000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B THR 1 C ? ? ? 1_555 B DVA 2 N ? ? B THR 1 B DVA 2 1_555 ? ? ? ? ? ? ? 1.317 ? ? covale2 covale one ? B THR 1 OG1 ? ? ? 1_555 B MVA 5 C ? ? B THR 1 B MVA 5 1_555 ? ? ? ? ? ? ? 1.116 ? ? covale3 covale both ? B THR 1 N ? ? ? 1_555 B PXZ 6 C0 ? ? B THR 1 B PXZ 6 1_555 ? ? ? ? ? ? ? 1.236 ? ? covale4 covale both ? B DVA 2 C ? ? ? 1_555 B PRO 3 N ? ? B DVA 2 B PRO 3 1_555 ? ? ? ? ? ? ? 1.316 ? ? covale5 covale both ? B PRO 3 C ? ? ? 1_555 B SAR 4 N ? ? B PRO 3 B SAR 4 1_555 ? ? ? ? ? ? ? 1.317 ? ? covale6 covale both ? B SAR 4 C ? ? ? 1_555 B MVA 5 N ? ? B SAR 4 B MVA 5 1_555 ? ? ? ? ? ? ? 1.193 sing ? covale7 covale both ? B PXZ 6 "C0'" ? ? ? 1_555 B THR 7 N ? ? B PXZ 6 B THR 7 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale8 covale both ? B THR 7 C ? ? ? 1_555 B DVA 8 N ? ? B THR 7 B DVA 8 1_555 ? ? ? ? ? ? ? 1.307 ? ? covale9 covale one ? B THR 7 OG1 ? ? ? 1_555 B MVA 11 C ? ? B THR 7 B MVA 11 1_555 ? ? ? ? ? ? ? 1.265 ? ? covale10 covale both ? B DVA 8 C ? ? ? 1_555 B PRO 9 N ? ? B DVA 8 B PRO 9 1_555 ? ? ? ? ? ? ? 1.315 ? ? covale11 covale both ? B PRO 9 C ? ? ? 1_555 B SAR 10 N ? ? B PRO 9 B SAR 10 1_555 ? ? ? ? ? ? ? 1.314 ? ? covale12 covale both ? B SAR 10 C ? ? ? 1_555 B MVA 11 N ? ? B SAR 10 B MVA 11 1_555 ? ? ? ? ? ? ? 1.277 ? ? metalc1 metalc ? ? A DT 1 O4 ? ? ? 1_555 C NA . NA ? ? A DT 1 A NA 101 1_555 ? ? ? ? ? ? ? 2.681 ? ? metalc2 metalc ? ? A DT 1 O4 ? ? ? 1_555 C NA . NA ? ? A DT 1 A NA 101 7_545 ? ? ? ? ? ? ? 2.681 ? ? metalc3 metalc ? ? C NA . NA ? ? ? 1_555 D HOH . O ? ? A NA 101 A HOH 206 1_555 ? ? ? ? ? ? ? 3.138 ? ? metalc4 metalc ? ? C NA . NA ? ? ? 1_555 D HOH . O ? ? A NA 101 A HOH 206 7_545 ? ? ? ? ? ? ? 3.139 ? ? metalc5 metalc ? ? C NA . NA ? ? ? 1_555 D HOH . O ? ? A NA 101 A HOH 242 1_555 ? ? ? ? ? ? ? 2.642 ? ? metalc6 metalc ? ? C NA . NA ? ? ? 1_555 D HOH . O ? ? A NA 101 A HOH 242 7_545 ? ? ? ? ? ? ? 2.642 ? ? hydrog1 hydrog ? ? A DT 2 N3 ? ? ? 1_555 A DA 8 N1 ? ? A DT 2 A DA 8 6_545 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DT 2 O4 ? ? ? 1_555 A DA 8 N6 ? ? A DT 2 A DA 8 6_545 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DA 7 N7 ? ? A DG 3 A DA 7 6_545 ? ? ? ? ? ? TYPE_9_PAIR ? ? ? hydrog4 hydrog ? ? A DG 3 O6 ? ? ? 1_555 A DA 7 N6 ? ? A DG 3 A DA 7 6_545 ? ? ? ? ? ? TYPE_9_PAIR ? ? ? hydrog5 hydrog ? ? A DC 5 N3 ? ? ? 1_555 A DG 6 N1 ? ? A DC 5 A DG 6 6_545 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 5 N4 ? ? ? 1_555 A DG 6 O6 ? ? A DC 5 A DG 6 6_545 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 5 O2 ? ? ? 1_555 A DG 6 N2 ? ? A DC 5 A DG 6 6_545 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A DC 5 N3 ? ? A DG 6 A DC 5 6_545 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DC 5 O2 ? ? A DG 6 A DC 5 6_545 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 6 O6 ? ? ? 1_555 A DC 5 N4 ? ? A DG 6 A DC 5 6_545 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DA 7 N6 ? ? ? 1_555 A DG 3 O6 ? ? A DA 7 A DG 3 6_545 ? ? ? ? ? ? TYPE_9_PAIR ? ? ? hydrog12 hydrog ? ? A DA 7 N7 ? ? ? 1_555 A DG 3 N1 ? ? A DA 7 A DG 3 6_545 ? ? ? ? ? ? TYPE_9_PAIR ? ? ? hydrog13 hydrog ? ? A DA 8 N1 ? ? ? 1_555 A DT 2 N3 ? ? A DA 8 A DT 2 6_545 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 8 N6 ? ? ? 1_555 A DT 2 O4 ? ? A DA 8 A DT 2 6_545 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O4 ? A DT 1 ? A DT 1 ? 1_555 NA ? C NA . ? A NA 101 ? 1_555 O4 ? A DT 1 ? A DT 1 ? 1_555 0.0 ? 2 O4 ? A DT 1 ? A DT 1 ? 1_555 NA ? C NA . ? A NA 101 ? 1_555 O ? D HOH . ? A HOH 206 ? 1_555 84.4 ? 3 O4 ? A DT 1 ? A DT 1 ? 1_555 NA ? C NA . ? A NA 101 ? 1_555 O ? D HOH . ? A HOH 206 ? 1_555 84.4 ? 4 O4 ? A DT 1 ? A DT 1 ? 1_555 NA ? C NA . ? A NA 101 ? 1_555 O ? D HOH . ? A HOH 206 ? 7_545 101.3 ? 5 O4 ? A DT 1 ? A DT 1 ? 1_555 NA ? C NA . ? A NA 101 ? 1_555 O ? D HOH . ? A HOH 206 ? 7_545 101.3 ? 6 O ? D HOH . ? A HOH 206 ? 1_555 NA ? C NA . ? A NA 101 ? 1_555 O ? D HOH . ? A HOH 206 ? 7_545 171.6 ? 7 O4 ? A DT 1 ? A DT 1 ? 1_555 NA ? C NA . ? A NA 101 ? 1_555 O ? D HOH . ? A HOH 242 ? 1_555 131.8 ? 8 O4 ? A DT 1 ? A DT 1 ? 1_555 NA ? C NA . ? A NA 101 ? 1_555 O ? D HOH . ? A HOH 242 ? 1_555 131.8 ? 9 O ? D HOH . ? A HOH 206 ? 1_555 NA ? C NA . ? A NA 101 ? 1_555 O ? D HOH . ? A HOH 242 ? 1_555 85.8 ? 10 O ? D HOH . ? A HOH 206 ? 7_545 NA ? C NA . ? A NA 101 ? 1_555 O ? D HOH . ? A HOH 242 ? 1_555 85.8 ? 11 O4 ? A DT 1 ? A DT 1 ? 1_555 NA ? C NA . ? A NA 101 ? 1_555 O ? D HOH . ? A HOH 242 ? 7_545 131.8 ? 12 O4 ? A DT 1 ? A DT 1 ? 1_555 NA ? C NA . ? A NA 101 ? 1_555 O ? D HOH . ? A HOH 242 ? 7_545 131.8 ? 13 O ? D HOH . ? A HOH 206 ? 1_555 NA ? C NA . ? A NA 101 ? 1_555 O ? D HOH . ? A HOH 242 ? 7_545 85.8 ? 14 O ? D HOH . ? A HOH 206 ? 7_545 NA ? C NA . ? A NA 101 ? 1_555 O ? D HOH . ? A HOH 242 ? 7_545 85.8 ? 15 O ? D HOH . ? A HOH 242 ? 1_555 NA ? C NA . ? A NA 101 ? 1_555 O ? D HOH . ? A HOH 242 ? 7_545 0.0 ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 SAR B 4 ? . . . . SAR B 4 ? 1_555 . . . . . . . GLY 1 SAR Methylation 'Named protein modification' 2 MVA B 5 ? . . . . MVA B 5 ? 1_555 . . . . . . . VAL 1 MVA Methylation 'Named protein modification' 3 SAR B 10 ? . . . . SAR B 10 ? 1_555 . . . . . . . GLY 1 SAR Methylation 'Named protein modification' 4 MVA B 11 ? . . . . MVA B 11 ? 1_555 . . . . . . . VAL 1 MVA Methylation 'Named protein modification' 5 PXZ B 6 ? . . . . PXZ B 6 ? 1_555 . . . . . . . ? 1 PXZ None 'Non-standard residue' 6 THR B 1 ? MVA B 5 ? THR B 1 ? 1_555 MVA B 5 ? 1_555 OG1 C . . . None 'Non-standard linkage' 7 THR B 1 ? PXZ B 6 ? THR B 1 ? 1_555 PXZ B 6 ? 1_555 N C0 . . . None 'Non-standard linkage' 8 THR B 7 ? MVA B 11 ? THR B 7 ? 1_555 MVA B 11 ? 1_555 OG1 C . . . None 'Non-standard linkage' # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 DVA 2 B . ? DVA 2 B PRO 3 B ? PRO 3 B 1 6.79 2 PRO 3 B . ? PRO 3 B SAR 4 B ? SAR 4 B 1 1.31 3 DVA 8 B . ? DVA 8 B PRO 9 B ? PRO 9 B 1 7.11 4 PRO 9 B . ? PRO 9 B SAR 10 B ? SAR 10 B 1 0.84 # _pdbx_entry_details.entry_id 6J0H _pdbx_entry_details.compound_details ;ACTINOMYCIN D IS A BICYCLIC PEPTIDE, A MEMBER OF THE ACTINOMYCIN FAMILY. HERE, ACTINOMYCIN D IS REPRESENTED BY THE SEQUENCE (SEQRES) ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OG1 B THR 1 ? ? O B MVA 5 ? ? 2.07 2 1 N B THR 1 ? ? O1 B PXZ 6 ? ? 2.07 3 1 OG1 B THR 7 ? ? O B MVA 11 ? ? 2.13 4 1 CB B THR 1 ? ? C B MVA 5 ? ? 2.16 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" A DT 2 ? ? P A DG 3 ? ? 1.449 1.607 -0.158 0.012 Y 2 1 C B SAR 4 ? ? N B MVA 5 ? ? 1.193 1.336 -0.143 0.023 Y # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "C3'" _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 DT _pdbx_validate_rmsd_angle.auth_seq_id_1 2 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 "O3'" _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 DT _pdbx_validate_rmsd_angle.auth_seq_id_2 2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 P _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 DG _pdbx_validate_rmsd_angle.auth_seq_id_3 3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 128.15 _pdbx_validate_rmsd_angle.angle_target_value 119.70 _pdbx_validate_rmsd_angle.angle_deviation 8.45 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.20 _pdbx_validate_rmsd_angle.linker_flag Y # _pdbx_validate_polymer_linkage.id 1 _pdbx_validate_polymer_linkage.PDB_model_num 1 _pdbx_validate_polymer_linkage.auth_atom_id_1 C _pdbx_validate_polymer_linkage.auth_asym_id_1 B _pdbx_validate_polymer_linkage.auth_comp_id_1 SAR _pdbx_validate_polymer_linkage.auth_seq_id_1 4 _pdbx_validate_polymer_linkage.PDB_ins_code_1 ? _pdbx_validate_polymer_linkage.label_alt_id_1 ? _pdbx_validate_polymer_linkage.auth_atom_id_2 N _pdbx_validate_polymer_linkage.auth_asym_id_2 B _pdbx_validate_polymer_linkage.auth_comp_id_2 MVA _pdbx_validate_polymer_linkage.auth_seq_id_2 5 _pdbx_validate_polymer_linkage.PDB_ins_code_2 ? _pdbx_validate_polymer_linkage.label_alt_id_2 ? _pdbx_validate_polymer_linkage.dist 1.19 # _pdbx_molecule_features.prd_id PRD_000001 _pdbx_molecule_features.name 'Actinomycin D' _pdbx_molecule_features.type Polypeptide _pdbx_molecule_features.class Antibiotic _pdbx_molecule_features.details ;ACTINOMYCIN D CONSISTS OF TWO PENTAMER RINGS LINKED BY THE CHROMOPHORE (PXZ) ; # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_000001 _pdbx_molecule.asym_id B # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A NA 101 ? C NA . 2 1 A HOH 242 ? D HOH . 3 1 B HOH 102 ? E HOH . # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id B _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 114 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 7.17 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 DVA N N N N 144 DVA CA C N R 145 DVA CB C N N 146 DVA CG1 C N N 147 DVA CG2 C N N 148 DVA C C N N 149 DVA O O N N 150 DVA OXT O N N 151 DVA H H N N 152 DVA H2 H N N 153 DVA HA H N N 154 DVA HB H N N 155 DVA HG11 H N N 156 DVA HG12 H N N 157 DVA HG13 H N N 158 DVA HG21 H N N 159 DVA HG22 H N N 160 DVA HG23 H N N 161 DVA HXT H N N 162 HOH O O N N 163 HOH H1 H N N 164 HOH H2 H N N 165 MVA N N N N 166 MVA CN C N N 167 MVA CA C N S 168 MVA CB C N N 169 MVA CG1 C N N 170 MVA CG2 C N N 171 MVA C C N N 172 MVA O O N N 173 MVA OXT O N N 174 MVA H H N N 175 MVA HN1 H N N 176 MVA HN2 H N N 177 MVA HN3 H N N 178 MVA HA H N N 179 MVA HB H N N 180 MVA HG11 H N N 181 MVA HG12 H N N 182 MVA HG13 H N N 183 MVA HG21 H N N 184 MVA HG22 H N N 185 MVA HG23 H N N 186 MVA HXT H N N 187 NA NA NA N N 188 PRO N N N N 189 PRO CA C N S 190 PRO C C N N 191 PRO O O N N 192 PRO CB C N N 193 PRO CG C N N 194 PRO CD C N N 195 PRO OXT O N N 196 PRO H H N N 197 PRO HA H N N 198 PRO HB2 H N N 199 PRO HB3 H N N 200 PRO HG2 H N N 201 PRO HG3 H N N 202 PRO HD2 H N N 203 PRO HD3 H N N 204 PRO HXT H N N 205 PXZ C1 C N N 206 PXZ C0 C N N 207 PXZ O1 O N N 208 PXZ C2 C N N 209 PXZ N2 N N N 210 PXZ C3 C N N 211 PXZ O3 O N N 212 PXZ C4 C N N 213 PXZ O5 O N N 214 PXZ C6 C Y N 215 PXZ C7 C Y N 216 PXZ C8 C Y N 217 PXZ C9 C Y N 218 PXZ "C0'" C N N 219 PXZ "O1'" O N N 220 PXZ N10 N N N 221 PXZ C11 C N N 222 PXZ C12 C N N 223 PXZ C13 C Y N 224 PXZ C14 C Y N 225 PXZ C15 C N N 226 PXZ C16 C N N 227 PXZ HN21 H N N 228 PXZ HN22 H N N 229 PXZ H7 H N N 230 PXZ H8 H N N 231 PXZ H151 H N N 232 PXZ H152 H N N 233 PXZ H153 H N N 234 PXZ H161 H N N 235 PXZ H162 H N N 236 PXZ H163 H N N 237 PXZ "OXT'" O N N 238 PXZ OXT O N N 239 PXZ "HXT'" H N N 240 PXZ HXT H N N 241 SAR N N N N 242 SAR CA C N N 243 SAR C C N N 244 SAR O O N N 245 SAR CN C N N 246 SAR OXT O N N 247 SAR H H N N 248 SAR HA2 H N N 249 SAR HA3 H N N 250 SAR HN1 H N N 251 SAR HN2 H N N 252 SAR HN3 H N N 253 SAR HXT H N N 254 THR N N N N 255 THR CA C N S 256 THR C C N N 257 THR O O N N 258 THR CB C N R 259 THR OG1 O N N 260 THR CG2 C N N 261 THR OXT O N N 262 THR H H N N 263 THR H2 H N N 264 THR HA H N N 265 THR HB H N N 266 THR HG1 H N N 267 THR HG21 H N N 268 THR HG22 H N N 269 THR HG23 H N N 270 THR HXT H N N 271 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 DVA N CA sing N N 150 DVA N H sing N N 151 DVA N H2 sing N N 152 DVA CA CB sing N N 153 DVA CA C sing N N 154 DVA CA HA sing N N 155 DVA CB CG1 sing N N 156 DVA CB CG2 sing N N 157 DVA CB HB sing N N 158 DVA CG1 HG11 sing N N 159 DVA CG1 HG12 sing N N 160 DVA CG1 HG13 sing N N 161 DVA CG2 HG21 sing N N 162 DVA CG2 HG22 sing N N 163 DVA CG2 HG23 sing N N 164 DVA C O doub N N 165 DVA C OXT sing N N 166 DVA OXT HXT sing N N 167 HOH O H1 sing N N 168 HOH O H2 sing N N 169 MVA N CN sing N N 170 MVA N CA sing N N 171 MVA N H sing N N 172 MVA CN HN1 sing N N 173 MVA CN HN2 sing N N 174 MVA CN HN3 sing N N 175 MVA CA CB sing N N 176 MVA CA C sing N N 177 MVA CA HA sing N N 178 MVA CB CG1 sing N N 179 MVA CB CG2 sing N N 180 MVA CB HB sing N N 181 MVA CG1 HG11 sing N N 182 MVA CG1 HG12 sing N N 183 MVA CG1 HG13 sing N N 184 MVA CG2 HG21 sing N N 185 MVA CG2 HG22 sing N N 186 MVA CG2 HG23 sing N N 187 MVA C O doub N N 188 MVA C OXT sing N N 189 MVA OXT HXT sing N N 190 PRO N CA sing N N 191 PRO N CD sing N N 192 PRO N H sing N N 193 PRO CA C sing N N 194 PRO CA CB sing N N 195 PRO CA HA sing N N 196 PRO C O doub N N 197 PRO C OXT sing N N 198 PRO CB CG sing N N 199 PRO CB HB2 sing N N 200 PRO CB HB3 sing N N 201 PRO CG CD sing N N 202 PRO CG HG2 sing N N 203 PRO CG HG3 sing N N 204 PRO CD HD2 sing N N 205 PRO CD HD3 sing N N 206 PRO OXT HXT sing N N 207 PXZ C1 C0 sing N N 208 PXZ C1 C2 doub N N 209 PXZ C1 C11 sing N N 210 PXZ C0 O1 doub N N 211 PXZ C2 N2 sing N N 212 PXZ C2 C3 sing N N 213 PXZ N2 HN21 sing N N 214 PXZ N2 HN22 sing N N 215 PXZ C3 O3 doub N N 216 PXZ C3 C4 sing N N 217 PXZ C4 C12 doub N N 218 PXZ C4 C15 sing N N 219 PXZ O5 C12 sing N N 220 PXZ O5 C13 sing N N 221 PXZ C6 C7 doub Y N 222 PXZ C6 C13 sing Y N 223 PXZ C6 C16 sing N N 224 PXZ C7 C8 sing Y N 225 PXZ C7 H7 sing N N 226 PXZ C8 C9 doub Y N 227 PXZ C8 H8 sing N N 228 PXZ C9 "C0'" sing N N 229 PXZ C9 C14 sing Y N 230 PXZ "C0'" "O1'" doub N N 231 PXZ N10 C11 doub N N 232 PXZ N10 C14 sing N N 233 PXZ C11 C12 sing N N 234 PXZ C13 C14 doub Y N 235 PXZ C15 H151 sing N N 236 PXZ C15 H152 sing N N 237 PXZ C15 H153 sing N N 238 PXZ C16 H161 sing N N 239 PXZ C16 H162 sing N N 240 PXZ C16 H163 sing N N 241 PXZ "C0'" "OXT'" sing N N 242 PXZ C0 OXT sing N N 243 PXZ "OXT'" "HXT'" sing N N 244 PXZ OXT HXT sing N N 245 SAR N CA sing N N 246 SAR N CN sing N N 247 SAR N H sing N N 248 SAR CA C sing N N 249 SAR CA HA2 sing N N 250 SAR CA HA3 sing N N 251 SAR C O doub N N 252 SAR C OXT sing N N 253 SAR CN HN1 sing N N 254 SAR CN HN2 sing N N 255 SAR CN HN3 sing N N 256 SAR OXT HXT sing N N 257 THR N CA sing N N 258 THR N H sing N N 259 THR N H2 sing N N 260 THR CA C sing N N 261 THR CA CB sing N N 262 THR CA HA sing N N 263 THR C O doub N N 264 THR C OXT sing N N 265 THR CB OG1 sing N N 266 THR CB CG2 sing N N 267 THR CB HB sing N N 268 THR OG1 HG1 sing N N 269 THR CG2 HG21 sing N N 270 THR CG2 HG22 sing N N 271 THR CG2 HG23 sing N N 272 THR OXT HXT sing N N 273 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 6J0H 'double helix' 6J0H 'bulge loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DT 2 1_555 A DA 8 6_545 0.014 -0.139 0.076 -13.088 -6.720 3.685 1 A_DT2:DA8_A A 2 ? A 8 ? 20 1 1 A DG 3 1_555 A DA 7 6_545 -0.039 4.789 -0.066 15.098 3.173 -83.513 2 A_DG3:DA7_A A 3 ? A 7 ? 9 3 1 A DT 2 6_545 A DA 8 1_555 0.014 -0.139 0.076 -13.088 -6.720 3.685 3 A_DT2:DA8_A A 2 ? A 8 ? 20 1 1 A DG 3 6_545 A DA 7 1_555 -0.039 4.789 -0.066 15.098 3.173 -83.513 4 A_DG3:DA7_A A 3 ? A 7 ? 9 3 1 A DC 5 1_555 A DG 6 6_545 0.290 -0.154 -0.033 12.955 19.725 2.583 5 A_DC5:DG6_A A 5 ? A 6 ? 19 1 1 A DG 6 1_555 A DC 5 6_545 -0.290 -0.154 -0.033 -12.955 19.725 2.583 6 A_DG6:DC5_A A 6 ? A 5 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DT 2 1_555 A DA 8 6_545 A DG 3 1_555 A DA 7 6_545 1.214 -1.552 3.116 0.628 9.326 62.588 -1.862 -1.133 2.894 8.924 -0.601 63.212 1 AA_DT2DG3:DA7DA8_AA A 2 ? A 8 ? A 3 ? A 7 ? 1 A DT 2 6_545 A DA 8 1_555 A DG 3 6_545 A DA 7 1_555 1.214 -1.552 3.116 0.628 9.326 62.588 -1.862 -1.133 2.894 8.924 -0.601 63.212 2 AA_DT2DG3:DA7DA8_AA A 2 ? A 8 ? A 3 ? A 7 ? 1 A DC 5 1_555 A DG 6 6_545 A DG 6 1_555 A DC 5 6_545 0.000 2.647 4.586 0.000 41.832 3.517 -6.063 0.000 3.031 85.409 0.000 41.973 3 AA_DC5DG6:DC5DG6_AA A 5 ? A 6 ? A 6 ? A 5 ? # _atom_sites.entry_id 6J0H _atom_sites.fract_transf_matrix[1][1] 0.016807 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016807 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010696 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N NA O P # loop_