HEADER MOTOR PROTEIN 28-DEC-18 6J19 TITLE ATPASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ESX-1 SECRETION SYSTEM PROTEIN ECCCB1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ESX CONSERVED COMPONENT CB1,SNM2 SECRETORY PROTEIN,TYPE VII COMPND 5 SECRETION SYSTEM PROTEIN ECCCB1,T7SS PROTEIN ECCCB1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: ESAT-6-LIKE PROTEIN ESXB; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: 10 KDA CULTURE FILTRATE ANTIGEN CFP-10,CFP-10,SECRETED COMPND 11 ANTIGENIC PROTEIN MTSA-10; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS (STRAIN ATCC 25618 / SOURCE 3 H37RV); SOURCE 4 ORGANISM_TAXID: 83332; SOURCE 5 STRAIN: ATCC 25618 / H37RV; SOURCE 6 GENE: ECCCB1, SNM2, RV3871; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS (STRAIN ATCC 25618 / SOURCE 11 H37RV); SOURCE 12 ORGANISM_TAXID: 83332; SOURCE 13 STRAIN: ATCC 25618 / H37RV; SOURCE 14 GENE: ESXB, CFP10, LHP, MTSA10, RV3874, MTV027.09; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 16 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS ATPASE, MOTOR PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.H.WANG,J.LI,Z.H.RAO REVDAT 3 22-NOV-23 6J19 1 LINK REVDAT 2 29-JAN-20 6J19 1 JRNL REVDAT 1 04-DEC-19 6J19 0 JRNL AUTH S.WANG,K.ZHOU,X.YANG,B.ZHANG,Y.ZHAO,Y.XIAO,X.YANG,H.YANG, JRNL AUTH 2 L.W.GUDDAT,J.LI,Z.RAO JRNL TITL STRUCTURAL INSIGHTS INTO SUBSTRATE RECOGNITION BY THE TYPE JRNL TITL 2 VII SECRETION SYSTEM. JRNL REF PROTEIN CELL V. 11 124 2020 JRNL REFN ESSN 1674-8018 JRNL PMID 31758528 JRNL DOI 10.1007/S13238-019-00671-Z REMARK 2 REMARK 2 RESOLUTION. 1.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.61 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 23744 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.130 REMARK 3 FREE R VALUE TEST SET COUNT : 1218 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.6254 - 4.1131 1.00 2713 119 0.1526 0.1739 REMARK 3 2 4.1131 - 3.2650 1.00 2587 131 0.1436 0.1677 REMARK 3 3 3.2650 - 2.8524 1.00 2533 162 0.1689 0.2199 REMARK 3 4 2.8524 - 2.5916 1.00 2533 143 0.1727 0.2003 REMARK 3 5 2.5916 - 2.4059 1.00 2531 124 0.1873 0.2500 REMARK 3 6 2.4059 - 2.2640 1.00 2532 129 0.1932 0.2322 REMARK 3 7 2.2640 - 2.1506 1.00 2490 164 0.2006 0.2836 REMARK 3 8 2.1506 - 2.0570 0.97 2444 130 0.2212 0.2641 REMARK 3 9 2.0570 - 1.9778 0.86 2163 116 0.2450 0.2707 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.620 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2193 REMARK 3 ANGLE : 0.857 2992 REMARK 3 CHIRALITY : 0.052 329 REMARK 3 PLANARITY : 0.006 389 REMARK 3 DIHEDRAL : 10.417 1327 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 320 THROUGH 343 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.9620 6.8415 -3.4024 REMARK 3 T TENSOR REMARK 3 T11: 0.2921 T22: 0.1663 REMARK 3 T33: 0.2774 T12: -0.0259 REMARK 3 T13: -0.0757 T23: 0.0050 REMARK 3 L TENSOR REMARK 3 L11: 4.9037 L22: 2.9526 REMARK 3 L33: 1.5049 L12: -0.7312 REMARK 3 L13: 0.5677 L23: 0.1311 REMARK 3 S TENSOR REMARK 3 S11: 0.3162 S12: 0.1881 S13: -0.8286 REMARK 3 S21: -0.1758 S22: -0.0716 S23: 0.1729 REMARK 3 S31: 0.3459 S32: 0.0653 S33: -0.2737 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 344 THROUGH 431 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.6278 20.6781 -3.7521 REMARK 3 T TENSOR REMARK 3 T11: 0.1950 T22: 0.1635 REMARK 3 T33: 0.1353 T12: -0.0087 REMARK 3 T13: -0.0211 T23: 0.0052 REMARK 3 L TENSOR REMARK 3 L11: 1.9888 L22: 1.7185 REMARK 3 L33: 1.1299 L12: -0.2195 REMARK 3 L13: 0.4107 L23: 0.0545 REMARK 3 S TENSOR REMARK 3 S11: 0.0525 S12: 0.0873 S13: -0.0136 REMARK 3 S21: -0.0718 S22: 0.0559 S23: 0.0945 REMARK 3 S31: 0.1218 S32: -0.0340 S33: -0.0897 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 432 THROUGH 469 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.0574 34.9734 2.1622 REMARK 3 T TENSOR REMARK 3 T11: 0.1459 T22: 0.1855 REMARK 3 T33: 0.2490 T12: 0.0192 REMARK 3 T13: 0.0032 T23: 0.0299 REMARK 3 L TENSOR REMARK 3 L11: 3.0886 L22: 0.6525 REMARK 3 L33: 2.2657 L12: 0.5894 REMARK 3 L13: -1.1208 L23: -0.3994 REMARK 3 S TENSOR REMARK 3 S11: 0.0115 S12: -0.2212 S13: -0.0862 REMARK 3 S21: 0.1052 S22: -0.0668 S23: -0.1083 REMARK 3 S31: -0.0675 S32: -0.0572 S33: 0.0436 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 470 THROUGH 546 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.8437 29.6532 4.4495 REMARK 3 T TENSOR REMARK 3 T11: 0.2126 T22: 0.1969 REMARK 3 T33: 0.1893 T12: -0.0200 REMARK 3 T13: -0.0129 T23: -0.0167 REMARK 3 L TENSOR REMARK 3 L11: 3.5490 L22: 0.9971 REMARK 3 L33: 1.4689 L12: -0.4439 REMARK 3 L13: 0.8840 L23: 0.1817 REMARK 3 S TENSOR REMARK 3 S11: -0.0262 S12: -0.2352 S13: 0.2737 REMARK 3 S21: 0.0862 S22: 0.0588 S23: -0.0945 REMARK 3 S31: -0.0892 S32: 0.0484 S33: -0.0468 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 547 THROUGH 559 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.2182 15.1752 10.3355 REMARK 3 T TENSOR REMARK 3 T11: 0.2969 T22: 0.2159 REMARK 3 T33: 0.2802 T12: -0.0242 REMARK 3 T13: -0.0527 T23: 0.0089 REMARK 3 L TENSOR REMARK 3 L11: 0.8701 L22: 3.5251 REMARK 3 L33: 5.7873 L12: 0.5654 REMARK 3 L13: 1.7610 L23: 3.8032 REMARK 3 S TENSOR REMARK 3 S11: 0.0372 S12: -0.1626 S13: 0.0102 REMARK 3 S21: 0.5204 S22: -0.1488 S23: 0.0416 REMARK 3 S31: 0.4889 S32: 0.1116 S33: 0.0136 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 560 THROUGH 580 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.9890 12.9794 2.9280 REMARK 3 T TENSOR REMARK 3 T11: 0.2161 T22: 0.1465 REMARK 3 T33: 0.2016 T12: 0.0220 REMARK 3 T13: -0.0346 T23: 0.0265 REMARK 3 L TENSOR REMARK 3 L11: 2.5622 L22: 3.0300 REMARK 3 L33: 3.8953 L12: 0.1920 REMARK 3 L13: 0.4397 L23: 1.1338 REMARK 3 S TENSOR REMARK 3 S11: 0.2423 S12: -0.0915 S13: -0.1102 REMARK 3 S21: -0.0296 S22: 0.0788 S23: -0.0118 REMARK 3 S31: 0.1105 S32: -0.2638 S33: -0.2890 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 87 THROUGH 94 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.9648 49.8335 -11.3656 REMARK 3 T TENSOR REMARK 3 T11: 0.5485 T22: 0.4278 REMARK 3 T33: 0.7403 T12: 0.0444 REMARK 3 T13: 0.0947 T23: 0.1317 REMARK 3 L TENSOR REMARK 3 L11: 1.4011 L22: 9.3821 REMARK 3 L33: 2.3957 L12: -1.0157 REMARK 3 L13: 0.5308 L23: 1.1158 REMARK 3 S TENSOR REMARK 3 S11: 0.1470 S12: 0.1130 S13: 1.4449 REMARK 3 S21: -0.0521 S22: 0.0023 S23: 0.4764 REMARK 3 S31: -1.4136 S32: -0.2777 S33: -0.0299 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 95 THROUGH 100 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.1597 38.1787 -9.9558 REMARK 3 T TENSOR REMARK 3 T11: 0.2523 T22: 0.2396 REMARK 3 T33: 0.2678 T12: 0.0179 REMARK 3 T13: -0.0294 T23: 0.0578 REMARK 3 L TENSOR REMARK 3 L11: 4.4286 L22: 5.0667 REMARK 3 L33: 5.1714 L12: 0.1493 REMARK 3 L13: -0.3083 L23: -0.7410 REMARK 3 S TENSOR REMARK 3 S11: 0.1348 S12: 0.6423 S13: 0.1425 REMARK 3 S21: -0.3114 S22: 0.2403 S23: 0.4689 REMARK 3 S31: -0.4893 S32: -0.7261 S33: -0.3875 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6J19 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1300009608. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97776 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23760 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.980 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 10.50 REMARK 200 R MERGE (I) : 0.18900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 2.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.01 REMARK 200 COMPLETENESS FOR SHELL (%) : 77.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 0.67400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6JD4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES PH 6.5, 0.2 M SODIUM REMARK 280 CHLORIDE, 25% (W/V) PEG3350, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 32.09750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 32.09750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 40.79000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 64.82350 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 40.79000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 64.82350 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 32.09750 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 40.79000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 64.82350 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 32.09750 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 40.79000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 64.82350 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 902 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 311 REMARK 465 PRO A 312 REMARK 465 GLY A 313 REMARK 465 SER A 314 REMARK 465 THR A 315 REMARK 465 GLU A 316 REMARK 465 GLN A 317 REMARK 465 ALA A 318 REMARK 465 PRO A 319 REMARK 465 GLU A 581 REMARK 465 GLU A 582 REMARK 465 VAL A 583 REMARK 465 PHE A 584 REMARK 465 ALA A 585 REMARK 465 ALA A 586 REMARK 465 PRO A 587 REMARK 465 PRO A 588 REMARK 465 SER A 589 REMARK 465 ALA A 590 REMARK 465 GLY A 591 REMARK 465 GLY B -3 REMARK 465 PRO B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 GLU B 3 REMARK 465 MET B 4 REMARK 465 LYS B 5 REMARK 465 THR B 6 REMARK 465 ASP B 7 REMARK 465 ALA B 8 REMARK 465 ALA B 9 REMARK 465 THR B 10 REMARK 465 LEU B 11 REMARK 465 ALA B 12 REMARK 465 GLN B 13 REMARK 465 GLU B 14 REMARK 465 ALA B 15 REMARK 465 GLY B 16 REMARK 465 ASN B 17 REMARK 465 PHE B 18 REMARK 465 GLU B 19 REMARK 465 ARG B 20 REMARK 465 ILE B 21 REMARK 465 SER B 22 REMARK 465 GLY B 23 REMARK 465 ASP B 24 REMARK 465 LEU B 25 REMARK 465 LYS B 26 REMARK 465 THR B 27 REMARK 465 GLN B 28 REMARK 465 ILE B 29 REMARK 465 ASP B 30 REMARK 465 GLN B 31 REMARK 465 VAL B 32 REMARK 465 GLU B 33 REMARK 465 SER B 34 REMARK 465 THR B 35 REMARK 465 ALA B 36 REMARK 465 GLY B 37 REMARK 465 SER B 38 REMARK 465 LEU B 39 REMARK 465 GLN B 40 REMARK 465 GLY B 41 REMARK 465 GLN B 42 REMARK 465 TRP B 43 REMARK 465 ARG B 44 REMARK 465 GLY B 45 REMARK 465 ALA B 46 REMARK 465 ALA B 47 REMARK 465 GLY B 48 REMARK 465 THR B 49 REMARK 465 ALA B 50 REMARK 465 ALA B 51 REMARK 465 GLN B 52 REMARK 465 ALA B 53 REMARK 465 ALA B 54 REMARK 465 VAL B 55 REMARK 465 VAL B 56 REMARK 465 ARG B 57 REMARK 465 PHE B 58 REMARK 465 GLN B 59 REMARK 465 GLU B 60 REMARK 465 ALA B 61 REMARK 465 ALA B 62 REMARK 465 ASN B 63 REMARK 465 LYS B 64 REMARK 465 GLN B 65 REMARK 465 LYS B 66 REMARK 465 GLN B 67 REMARK 465 GLU B 68 REMARK 465 LEU B 69 REMARK 465 ASP B 70 REMARK 465 GLU B 71 REMARK 465 ILE B 72 REMARK 465 SER B 73 REMARK 465 THR B 74 REMARK 465 ASN B 75 REMARK 465 ILE B 76 REMARK 465 ARG B 77 REMARK 465 GLN B 78 REMARK 465 ALA B 79 REMARK 465 GLY B 80 REMARK 465 VAL B 81 REMARK 465 GLN B 82 REMARK 465 TYR B 83 REMARK 465 SER B 84 REMARK 465 ARG B 85 REMARK 465 ALA B 86 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 368 -55.51 -133.00 REMARK 500 PHE A 525 -74.68 -121.37 REMARK 500 LEU A 539 -165.91 -76.64 REMARK 500 GLU B 88 -52.08 -137.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 602 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 383 OG1 REMARK 620 2 ATP A 601 O1G 169.8 REMARK 620 3 ATP A 601 O1B 87.5 90.3 REMARK 620 4 HOH A 722 O 81.8 88.6 95.6 REMARK 620 5 HOH A 733 O 89.8 92.4 177.3 84.0 REMARK 620 6 HOH A 758 O 93.5 96.2 83.8 175.2 96.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ATP A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 602 DBREF 6J19 A 315 591 UNP P9WNB1 ECC1B_MYCTU 315 591 DBREF 6J19 B 1 100 UNP P9WNK5 ESXB_MYCTU 1 100 SEQADV 6J19 GLY A 311 UNP P9WNB1 EXPRESSION TAG SEQADV 6J19 PRO A 312 UNP P9WNB1 EXPRESSION TAG SEQADV 6J19 GLY A 313 UNP P9WNB1 EXPRESSION TAG SEQADV 6J19 SER A 314 UNP P9WNB1 EXPRESSION TAG SEQADV 6J19 GLY B -3 UNP P9WNK5 EXPRESSION TAG SEQADV 6J19 PRO B -2 UNP P9WNK5 EXPRESSION TAG SEQADV 6J19 GLY B -1 UNP P9WNK5 EXPRESSION TAG SEQADV 6J19 SER B 0 UNP P9WNK5 EXPRESSION TAG SEQRES 1 A 281 GLY PRO GLY SER THR GLU GLN ALA PRO PRO VAL ARG VAL SEQRES 2 A 281 LEU PRO GLU ARG ILE HIS LEU HIS GLU LEU ASP PRO ASN SEQRES 3 A 281 PRO PRO GLY PRO GLU SER ASP TYR ARG THR ARG TRP GLU SEQRES 4 A 281 ILE PRO ILE GLY LEU ARG GLU THR ASP LEU THR PRO ALA SEQRES 5 A 281 HIS CYS HIS MET HIS THR ASN PRO HIS LEU LEU ILE PHE SEQRES 6 A 281 GLY ALA ALA LYS SER GLY LYS THR THR ILE ALA HIS ALA SEQRES 7 A 281 ILE ALA ARG ALA ILE CYS ALA ARG ASN SER PRO GLN GLN SEQRES 8 A 281 VAL ARG PHE MET LEU ALA ASP TYR ARG SER GLY LEU LEU SEQRES 9 A 281 ASP ALA VAL PRO ASP THR HIS LEU LEU GLY ALA GLY ALA SEQRES 10 A 281 ILE ASN ARG ASN SER ALA SER LEU ASP GLU ALA VAL GLN SEQRES 11 A 281 ALA LEU ALA VAL ASN LEU LYS LYS ARG LEU PRO PRO THR SEQRES 12 A 281 ASP LEU THR THR ALA GLN LEU ARG SER ARG SER TRP TRP SEQRES 13 A 281 SER GLY PHE ASP VAL VAL LEU LEU VAL ASP ASP TRP HIS SEQRES 14 A 281 MET ILE VAL GLY ALA ALA GLY GLY MET PRO PRO MET ALA SEQRES 15 A 281 PRO LEU ALA PRO LEU LEU PRO ALA ALA ALA ASP ILE GLY SEQRES 16 A 281 LEU HIS ILE ILE VAL THR CYS GLN MET SER GLN ALA TYR SEQRES 17 A 281 LYS ALA THR MET ASP LYS PHE VAL GLY ALA ALA PHE GLY SEQRES 18 A 281 SER GLY ALA PRO THR MET PHE LEU SER GLY GLU LYS GLN SEQRES 19 A 281 GLU PHE PRO SER SER GLU PHE LYS VAL LYS ARG ARG PRO SEQRES 20 A 281 PRO GLY GLN ALA PHE LEU VAL SER PRO ASP GLY LYS GLU SEQRES 21 A 281 VAL ILE GLN ALA PRO TYR ILE GLU PRO PRO GLU GLU VAL SEQRES 22 A 281 PHE ALA ALA PRO PRO SER ALA GLY SEQRES 1 B 104 GLY PRO GLY SER MET ALA GLU MET LYS THR ASP ALA ALA SEQRES 2 B 104 THR LEU ALA GLN GLU ALA GLY ASN PHE GLU ARG ILE SER SEQRES 3 B 104 GLY ASP LEU LYS THR GLN ILE ASP GLN VAL GLU SER THR SEQRES 4 B 104 ALA GLY SER LEU GLN GLY GLN TRP ARG GLY ALA ALA GLY SEQRES 5 B 104 THR ALA ALA GLN ALA ALA VAL VAL ARG PHE GLN GLU ALA SEQRES 6 B 104 ALA ASN LYS GLN LYS GLN GLU LEU ASP GLU ILE SER THR SEQRES 7 B 104 ASN ILE ARG GLN ALA GLY VAL GLN TYR SER ARG ALA ASP SEQRES 8 B 104 GLU GLU GLN GLN GLN ALA LEU SER SER GLN MET GLY PHE HET ATP A 601 31 HET MG A 602 1 HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 3 ATP C10 H16 N5 O13 P3 FORMUL 4 MG MG 2+ FORMUL 5 HOH *221(H2 O) HELIX 1 AA1 HIS A 329 ASP A 334 1 6 HELIX 2 AA2 ASP A 343 TRP A 348 1 6 HELIX 3 AA3 GLY A 381 ASN A 397 1 17 HELIX 4 AA4 PRO A 418 LEU A 422 5 5 HELIX 5 AA5 ASN A 431 LYS A 448 1 18 HELIX 6 AA6 THR A 456 ARG A 463 1 8 HELIX 7 AA7 ASP A 477 ALA A 484 1 8 HELIX 8 AA8 MET A 491 ALA A 495 5 5 HELIX 9 AA9 LEU A 497 PRO A 499 5 3 HELIX 10 AB1 ALA A 500 GLY A 505 1 6 HELIX 11 AB2 MET A 514 THR A 521 1 8 HELIX 12 AB3 PHE A 525 SER A 532 1 8 HELIX 13 AB4 GLU A 542 PHE A 546 5 5 HELIX 14 AB5 LEU B 94 MET B 98 5 5 SHEET 1 AA110 PRO A 361 HIS A 365 0 SHEET 2 AA110 GLU A 349 ARG A 355 -1 N GLY A 353 O ALA A 362 SHEET 3 AA110 GLY A 568 GLN A 573 -1 O GLN A 573 N LEU A 354 SHEET 4 AA110 GLN A 560 SER A 565 -1 N LEU A 563 O GLU A 570 SHEET 5 AA110 THR A 536 PHE A 538 -1 N THR A 536 O VAL A 564 SHEET 6 AA110 LEU A 372 GLY A 376 1 N LEU A 373 O MET A 537 SHEET 7 AA110 LEU A 506 GLN A 513 1 O VAL A 510 N ILE A 374 SHEET 8 AA110 ASP A 470 VAL A 475 1 N LEU A 473 O HIS A 507 SHEET 9 AA110 VAL A 402 ALA A 407 1 N ARG A 403 O VAL A 472 SHEET 10 AA110 ILE A 428 ASN A 429 1 O ASN A 429 N LEU A 406 LINK OG1 THR A 383 MG MG A 602 1555 1555 2.22 LINK O1G ATP A 601 MG MG A 602 1555 1555 2.03 LINK O1B ATP A 601 MG MG A 602 1555 1555 2.04 LINK MG MG A 602 O HOH A 722 1555 1555 2.10 LINK MG MG A 602 O HOH A 733 1555 1555 2.06 LINK MG MG A 602 O HOH A 758 1555 1555 2.02 SITE 1 AC1 25 GLU A 326 ARG A 327 ALA A 378 LYS A 379 SITE 2 AC1 25 SER A 380 GLY A 381 LYS A 382 THR A 383 SITE 3 AC1 25 THR A 384 ARG A 410 PRO A 558 GLN A 573 SITE 4 AC1 25 ALA A 574 PRO A 575 TYR A 576 MG A 602 SITE 5 AC1 25 HOH A 721 HOH A 722 HOH A 731 HOH A 733 SITE 6 AC1 25 HOH A 758 HOH A 772 HOH A 831 HOH A 832 SITE 7 AC1 25 HOH A 846 SITE 1 AC2 5 THR A 383 ATP A 601 HOH A 722 HOH A 733 SITE 2 AC2 5 HOH A 758 CRYST1 81.580 129.647 64.195 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012258 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007713 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015578 0.00000