HEADER BIOSYNTHETIC PROTEIN 28-DEC-18 6J1M TITLE ANISODUS ACUTANGULUS TYPE III POLYKETIDE SYTHASE AAPKS2 IN COMPLEX TITLE 2 WITH 4-CARBOXY-3-OXOBUTANOYL COVALENT TO C166 COMPND MOL_ID: 1; COMPND 2 MOLECULE: A. ACUTANGULUS PKS2; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ANISODUS ACUTANGULUS; SOURCE 3 ORGANISM_TAXID: 402998; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ANISODUS ACUTANGULUS, TYPE III POLYKETIDE SYTHASE, TROPANE ALKALOIDS KEYWDS 2 BIOSYTHESIS, BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.L.FANG,Y.ZHANG REVDAT 3 22-NOV-23 6J1M 1 REMARK REVDAT 2 25-SEP-19 6J1M 1 JRNL REVDAT 1 11-SEP-19 6J1M 0 JRNL AUTH J.P.HUANG,C.FANG,X.MA,L.WANG,J.YANG,J.LUO,Y.YAN,Y.ZHANG, JRNL AUTH 2 S.X.HUANG JRNL TITL TROPANE ALKALOIDS BIOSYNTHESIS INVOLVES AN UNUSUAL TYPE III JRNL TITL 2 POLYKETIDE SYNTHASE AND NON-ENZYMATIC CONDENSATION. JRNL REF NAT COMMUN V. 10 4036 2019 JRNL REFN ESSN 2041-1723 JRNL PMID 31492848 JRNL DOI 10.1038/S41467-019-11987-Z REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.06 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.480 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 85057 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.360 REMARK 3 FREE R VALUE TEST SET COUNT : 2004 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.0708 - 4.8202 1.00 6436 158 0.1601 0.1614 REMARK 3 2 4.8202 - 3.8265 1.00 6234 148 0.1413 0.1551 REMARK 3 3 3.8265 - 3.3429 1.00 6163 151 0.1596 0.1583 REMARK 3 4 3.3429 - 3.0373 1.00 6144 151 0.1772 0.1800 REMARK 3 5 3.0373 - 2.8197 1.00 6114 148 0.1875 0.2190 REMARK 3 6 2.8197 - 2.6534 1.00 6121 149 0.1884 0.2306 REMARK 3 7 2.6534 - 2.5206 1.00 6093 143 0.1890 0.2246 REMARK 3 8 2.5206 - 2.4108 1.00 6054 145 0.1987 0.1898 REMARK 3 9 2.4108 - 2.3180 1.00 6112 147 0.2013 0.2324 REMARK 3 10 2.3180 - 2.2380 1.00 6046 141 0.2130 0.2405 REMARK 3 11 2.2380 - 2.1681 1.00 6041 150 0.2256 0.2454 REMARK 3 12 2.1681 - 2.1061 0.98 5959 141 0.2314 0.2625 REMARK 3 13 2.1061 - 2.0507 0.89 5409 131 0.2574 0.2612 REMARK 3 14 2.0507 - 2.0006 0.68 4127 101 0.2750 0.3187 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.030 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.89 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND ((RESID 16 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 17 THROUGH 56 OR (RESID 57 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB OR NAME CG )) OR RESID 58 OR REMARK 3 RESID 60 THROUGH 79 OR (RESID 80 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB OR NAME CG )) OR RESID 81 THROUGH REMARK 3 94 OR RESID 96 THROUGH 154 OR RESID 156 REMARK 3 THROUGH 286 OR (RESID 287 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB OR REMARK 3 NAME CG OR NAME CD )) OR RESID 288 REMARK 3 THROUGH 360 OR (RESID 361 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB OR REMARK 3 NAME CG OR NAME CD )) OR RESID 362 REMARK 3 THROUGH 391 OR RESID 401)) REMARK 3 SELECTION : (CHAIN B AND (RESID 16 THROUGH 52 OR REMARK 3 (RESID 53 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB OR NAME CG OR NAME REMARK 3 OD1)) OR RESID 54 THROUGH 58 OR RESID 60 REMARK 3 THROUGH 80 OR (RESID 81 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB OR REMARK 3 NAME CG OR NAME CD )) OR RESID 82 THROUGH REMARK 3 94 OR RESID 96 THROUGH 113 OR (RESID 114 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB OR NAME CG OR NAME CD )) OR REMARK 3 RESID 115 THROUGH 154 OR RESID 156 REMARK 3 THROUGH 230 OR (RESID 231 THROUGH 232 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB OR NAME CG OR NAME CD )) OR RESID REMARK 3 233 THROUGH 235 OR (RESID 236 THROUGH 237 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB OR NAME CG OR NAME CD )) OR REMARK 3 RESID 238 THROUGH 270 OR (RESID 271 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB OR NAME CG )) OR RESID 272 REMARK 3 THROUGH 391 OR RESID 401)) REMARK 3 ATOM PAIRS NUMBER : 3527 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6J1M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1300010293. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-OCT-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 87808 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.00 REMARK 200 R MERGE (I) : 0.10400 REMARK 200 R SYM (I) : 0.10400 REMARK 200 FOR THE DATA SET : 24.8920 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MORDA REMARK 200 STARTING MODEL: 1CML REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1% TRYPTONE, 0.05M HEPES 7.0, 20% REMARK 280 PEG3350, 0.001M SODIUM AZIDE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 127.38333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 63.69167 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 63.69167 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 127.38333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 721 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 756 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -35 REMARK 465 GLY A -34 REMARK 465 SER A -33 REMARK 465 SER A -32 REMARK 465 HIS A -31 REMARK 465 HIS A -30 REMARK 465 HIS A -29 REMARK 465 HIS A -28 REMARK 465 HIS A -27 REMARK 465 HIS A -26 REMARK 465 SER A -25 REMARK 465 SER A -24 REMARK 465 GLY A -23 REMARK 465 LEU A -22 REMARK 465 VAL A -21 REMARK 465 PRO A -20 REMARK 465 ARG A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 HIS A -16 REMARK 465 MET A -15 REMARK 465 ALA A -14 REMARK 465 SER A -13 REMARK 465 MET A -12 REMARK 465 THR A -11 REMARK 465 GLY A -10 REMARK 465 GLY A -9 REMARK 465 GLN A -8 REMARK 465 GLN A -7 REMARK 465 MET A -6 REMARK 465 GLY A -5 REMARK 465 ARG A -4 REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 GLU A -1 REMARK 465 PHE A 0 REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 MET A 3 REMARK 465 GLY A 4 REMARK 465 ASN A 5 REMARK 465 GLY A 6 REMARK 465 LYS A 7 REMARK 465 GLN A 8 REMARK 465 ALA A 9 REMARK 465 LEU A 10 REMARK 465 MET B -35 REMARK 465 GLY B -34 REMARK 465 SER B -33 REMARK 465 SER B -32 REMARK 465 HIS B -31 REMARK 465 HIS B -30 REMARK 465 HIS B -29 REMARK 465 HIS B -28 REMARK 465 HIS B -27 REMARK 465 HIS B -26 REMARK 465 SER B -25 REMARK 465 SER B -24 REMARK 465 GLY B -23 REMARK 465 LEU B -22 REMARK 465 VAL B -21 REMARK 465 PRO B -20 REMARK 465 ARG B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 HIS B -16 REMARK 465 MET B -15 REMARK 465 ALA B -14 REMARK 465 SER B -13 REMARK 465 MET B -12 REMARK 465 THR B -11 REMARK 465 GLY B -10 REMARK 465 GLY B -9 REMARK 465 GLN B -8 REMARK 465 GLN B -7 REMARK 465 MET B -6 REMARK 465 GLY B -5 REMARK 465 ARG B -4 REMARK 465 GLY B -3 REMARK 465 SER B -2 REMARK 465 GLU B -1 REMARK 465 PHE B 0 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 MET B 3 REMARK 465 GLY B 4 REMARK 465 ASN B 5 REMARK 465 GLY B 6 REMARK 465 LYS B 7 REMARK 465 GLN B 8 REMARK 465 ALA B 9 REMARK 465 LEU B 10 REMARK 465 LYS B 11 REMARK 465 SER B 12 REMARK 465 GLN B 13 REMARK 465 ARG B 14 REMARK 465 SER B 15 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 11 CG CD CE NZ REMARK 470 ARG A 14 NE CZ NH1 NH2 REMARK 470 ASP A 53 OD2 REMARK 470 LYS A 81 CE NZ REMARK 470 LYS A 114 CE NZ REMARK 470 LYS A 231 CE NZ REMARK 470 LYS A 236 CE NZ REMARK 470 LYS A 271 CD CE NZ REMARK 470 GLU B 16 CG CD OE1 OE2 REMARK 470 LYS B 57 CD CE NZ REMARK 470 LYS B 80 CD CE NZ REMARK 470 LYS B 271 CE NZ REMARK 470 LYS B 287 CE NZ REMARK 470 LYS B 361 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS B 166 CAA 6JN B 401 2.11 REMARK 500 SG CYS A 166 CAA 6JN A 401 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP A 34 CB ASP A 34 CG -0.144 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 16 58.31 -68.91 REMARK 500 SER A 89 22.19 -149.25 REMARK 500 SER A 92 -5.02 -142.16 REMARK 500 ASN A 229 70.85 63.93 REMARK 500 MET A 339 32.41 -99.98 REMARK 500 SER A 340 -129.50 54.56 REMARK 500 SER B 89 22.14 -149.22 REMARK 500 SER B 92 -5.01 -142.23 REMARK 500 ASN B 229 70.77 64.03 REMARK 500 MET B 339 32.42 -99.92 REMARK 500 SER B 340 -129.50 54.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 832 DISTANCE = 5.92 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6JN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide 6JN B 401 and CYS B REMARK 800 166 DBREF 6J1M A -35 391 PDB 6J1M 6J1M -35 391 DBREF 6J1M B -35 391 PDB 6J1M 6J1M -35 391 SEQRES 1 A 427 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 427 LEU VAL PRO ARG GLY SER HIS MET ALA SER MET THR GLY SEQRES 3 A 427 GLY GLN GLN MET GLY ARG GLY SER GLU PHE MET LYS MET SEQRES 4 A 427 GLY ASN GLY LYS GLN ALA LEU LYS SER GLN ARG SER GLU SEQRES 5 A 427 GLY PRO ALA LEU VAL LEU ALA ILE GLY THR ALA THR PRO SEQRES 6 A 427 SER HIS TRP ILE ASP GLN SER SER TYR PRO ASP TYR TYR SEQRES 7 A 427 PHE ARG VAL THR ASN SER ASP HIS LEU VAL ASP LEU LYS SEQRES 8 A 427 GLU LYS PHE ARG ARG ILE CYS SER ARG THR MET ILE LYS SEQRES 9 A 427 LYS ARG HIS MET LEU LEU THR GLU GLU ILE LEU LYS LYS SEQRES 10 A 427 ASN PRO ASN LEU CYS SER PHE SER GLU PRO SER LEU ASP SEQRES 11 A 427 ILE ARG GLN ASP ILE LEU VAL SER GLU ILE PRO LYS LEU SEQRES 12 A 427 GLY LYS GLU ALA ALA LEU LYS ALA ILE GLN GLU TRP ALA SEQRES 13 A 427 GLN PRO LYS SER THR ILE THR HIS LEU VAL PHE CYS THR SEQRES 14 A 427 ARG SER GLY VAL ASP MET PRO GLY ALA ASP TYR GLN LEU SEQRES 15 A 427 ILE LYS LEU LEU GLY LEU GLY PRO SER VAL GLN ARG LEU SEQRES 16 A 427 MET MET TYR GLN GLN GLY CYS PHE ALA GLY GLY THR MET SEQRES 17 A 427 LEU ARG LEU ALA LYS ASP LEU ALA GLU ASN ASN LYS GLY SEQRES 18 A 427 ALA ARG ILE LEU VAL ILE CYS ALA GLU SER SER ALA ILE SEQRES 19 A 427 GLY PHE ARG GLY PRO SER GLU SER HIS VAL ASP ASN LEU SEQRES 20 A 427 VAL ALA GLN ALA LEU PHE GLY ASP GLY ALA ALA ALA ILE SEQRES 21 A 427 ILE VAL GLY SER ASN PRO LYS PRO GLY LEU GLU LYS PRO SEQRES 22 A 427 VAL PHE GLU ILE VAL SER ALA ALA GLN THR PHE VAL PRO SEQRES 23 A 427 ASN GLY ASP CYS HIS LEU ALA LEU HIS LEU ARG GLU MET SEQRES 24 A 427 GLY LEU THR PHE HIS CYS THR LYS ASP VAL PRO PRO THR SEQRES 25 A 427 ILE ALA LYS ASN VAL GLU SER CYS LEU THR LYS ALA LEU SEQRES 26 A 427 GLU PRO LEU GLY ILE SER ASP TRP ASN SER LEU PHE TRP SEQRES 27 A 427 ILE LEU HIS PRO GLY GLY ASN ALA ILE VAL ASP GLN VAL SEQRES 28 A 427 GLU ASN LYS LEU GLY LEU GLU HIS GLU LYS LEU ARG ALA SEQRES 29 A 427 THR ARG ASN ILE LEU ARG ASP PHE GLY ASN MET SER SER SEQRES 30 A 427 ALA CYS VAL LEU PHE ILE LEU ASP GLU ILE ARG LYS LYS SEQRES 31 A 427 SER ALA ARG ASP GLY LEU LYS THR THR GLY GLU GLY LEU SEQRES 32 A 427 ASP PHE GLY VAL LEU LEU SER PHE GLY PRO GLY LEU THR SEQRES 33 A 427 ILE GLU THR VAL VAL LEU HIS SER LYS PRO ILE SEQRES 1 B 427 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 427 LEU VAL PRO ARG GLY SER HIS MET ALA SER MET THR GLY SEQRES 3 B 427 GLY GLN GLN MET GLY ARG GLY SER GLU PHE MET LYS MET SEQRES 4 B 427 GLY ASN GLY LYS GLN ALA LEU LYS SER GLN ARG SER GLU SEQRES 5 B 427 GLY PRO ALA LEU VAL LEU ALA ILE GLY THR ALA THR PRO SEQRES 6 B 427 SER HIS TRP ILE ASP GLN SER SER TYR PRO ASP TYR TYR SEQRES 7 B 427 PHE ARG VAL THR ASN SER ASP HIS LEU VAL ASP LEU LYS SEQRES 8 B 427 GLU LYS PHE ARG ARG ILE CYS SER ARG THR MET ILE LYS SEQRES 9 B 427 LYS ARG HIS MET LEU LEU THR GLU GLU ILE LEU LYS LYS SEQRES 10 B 427 ASN PRO ASN LEU CYS SER PHE SER GLU PRO SER LEU ASP SEQRES 11 B 427 ILE ARG GLN ASP ILE LEU VAL SER GLU ILE PRO LYS LEU SEQRES 12 B 427 GLY LYS GLU ALA ALA LEU LYS ALA ILE GLN GLU TRP ALA SEQRES 13 B 427 GLN PRO LYS SER THR ILE THR HIS LEU VAL PHE CYS THR SEQRES 14 B 427 ARG SER GLY VAL ASP MET PRO GLY ALA ASP TYR GLN LEU SEQRES 15 B 427 ILE LYS LEU LEU GLY LEU GLY PRO SER VAL GLN ARG LEU SEQRES 16 B 427 MET MET TYR GLN GLN GLY CYS PHE ALA GLY GLY THR MET SEQRES 17 B 427 LEU ARG LEU ALA LYS ASP LEU ALA GLU ASN ASN LYS GLY SEQRES 18 B 427 ALA ARG ILE LEU VAL ILE CYS ALA GLU SER SER ALA ILE SEQRES 19 B 427 GLY PHE ARG GLY PRO SER GLU SER HIS VAL ASP ASN LEU SEQRES 20 B 427 VAL ALA GLN ALA LEU PHE GLY ASP GLY ALA ALA ALA ILE SEQRES 21 B 427 ILE VAL GLY SER ASN PRO LYS PRO GLY LEU GLU LYS PRO SEQRES 22 B 427 VAL PHE GLU ILE VAL SER ALA ALA GLN THR PHE VAL PRO SEQRES 23 B 427 ASN GLY ASP CYS HIS LEU ALA LEU HIS LEU ARG GLU MET SEQRES 24 B 427 GLY LEU THR PHE HIS CYS THR LYS ASP VAL PRO PRO THR SEQRES 25 B 427 ILE ALA LYS ASN VAL GLU SER CYS LEU THR LYS ALA LEU SEQRES 26 B 427 GLU PRO LEU GLY ILE SER ASP TRP ASN SER LEU PHE TRP SEQRES 27 B 427 ILE LEU HIS PRO GLY GLY ASN ALA ILE VAL ASP GLN VAL SEQRES 28 B 427 GLU ASN LYS LEU GLY LEU GLU HIS GLU LYS LEU ARG ALA SEQRES 29 B 427 THR ARG ASN ILE LEU ARG ASP PHE GLY ASN MET SER SER SEQRES 30 B 427 ALA CYS VAL LEU PHE ILE LEU ASP GLU ILE ARG LYS LYS SEQRES 31 B 427 SER ALA ARG ASP GLY LEU LYS THR THR GLY GLU GLY LEU SEQRES 32 B 427 ASP PHE GLY VAL LEU LEU SER PHE GLY PRO GLY LEU THR SEQRES 33 B 427 ILE GLU THR VAL VAL LEU HIS SER LYS PRO ILE HET 6JN A 401 9 HET EDO A 402 4 HET EDO A 403 4 HET EDO A 404 4 HET 6JN B 401 9 HET EDO B 402 4 HETNAM 6JN 3-OXOPENTANEDIOIC ACID HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 6JN 2(C5 H6 O5) FORMUL 4 EDO 4(C2 H6 O2) FORMUL 9 HOH *627(H2 O) HELIX 1 AA1 SER A 37 THR A 46 1 10 HELIX 2 AA2 LEU A 51 THR A 65 1 15 HELIX 3 AA3 THR A 75 ASN A 82 1 8 HELIX 4 AA4 ASN A 82 SER A 87 1 6 HELIX 5 AA5 SER A 92 ALA A 120 1 29 HELIX 6 AA6 PRO A 122 ILE A 126 5 5 HELIX 7 AA7 GLY A 141 GLY A 151 1 11 HELIX 8 AA8 PHE A 167 ASN A 183 1 17 HELIX 9 AA9 SER A 195 GLY A 199 5 5 HELIX 10 AB1 ASP A 209 PHE A 217 1 9 HELIX 11 AB2 ASN A 251 CYS A 254 5 4 HELIX 12 AB3 ASP A 272 GLU A 290 1 19 HELIX 13 AB4 PRO A 291 GLY A 293 5 3 HELIX 14 AB5 ASP A 296 LEU A 300 5 5 HELIX 15 AB6 GLY A 308 GLY A 320 1 13 HELIX 16 AB7 LEU A 326 GLY A 337 1 12 HELIX 17 AB8 MET A 339 SER A 341 5 3 HELIX 18 AB9 ALA A 342 ASP A 358 1 17 HELIX 19 AC1 SER B 37 THR B 46 1 10 HELIX 20 AC2 LEU B 51 MET B 66 1 16 HELIX 21 AC3 THR B 75 ASN B 82 1 8 HELIX 22 AC4 ASN B 82 SER B 87 1 6 HELIX 23 AC5 SER B 92 ALA B 120 1 29 HELIX 24 AC6 PRO B 122 ILE B 126 5 5 HELIX 25 AC7 GLY B 141 GLY B 151 1 11 HELIX 26 AC8 PHE B 167 ASN B 183 1 17 HELIX 27 AC9 SER B 195 GLY B 199 5 5 HELIX 28 AD1 ASP B 209 PHE B 217 1 9 HELIX 29 AD2 ASN B 251 CYS B 254 5 4 HELIX 30 AD3 ASP B 272 GLU B 290 1 19 HELIX 31 AD4 PRO B 291 GLY B 293 5 3 HELIX 32 AD5 ASP B 296 LEU B 300 5 5 HELIX 33 AD6 GLY B 308 GLY B 320 1 13 HELIX 34 AD7 LEU B 326 GLY B 337 1 12 HELIX 35 AD8 MET B 339 SER B 341 5 3 HELIX 36 AD9 ALA B 342 ASP B 358 1 17 SHEET 1 AA1 9 GLN A 157 TYR A 162 0 SHEET 2 AA1 9 HIS A 128 THR A 133 1 N PHE A 131 O MET A 161 SHEET 3 AA1 9 ARG A 187 GLU A 194 1 O ILE A 191 N VAL A 130 SHEET 4 AA1 9 GLY A 220 GLY A 227 -1 O VAL A 226 N ILE A 188 SHEET 5 AA1 9 LEU A 20 ALA A 27 -1 N LEU A 22 O ILE A 225 SHEET 6 AA1 9 PHE A 239 PHE A 248 -1 O PHE A 239 N VAL A 21 SHEET 7 AA1 9 THR A 380 SER A 388 -1 O THR A 383 N ALA A 245 SHEET 8 AA1 9 PHE A 369 GLY A 376 -1 N LEU A 372 O VAL A 384 SHEET 9 AA1 9 PHE A 301 LEU A 304 1 N ILE A 303 O LEU A 373 SHEET 1 AA2 2 TRP A 32 ASP A 34 0 SHEET 2 AA2 2 LYS A 69 HIS A 71 -1 O ARG A 70 N ILE A 33 SHEET 1 AA3 2 LEU A 256 ALA A 257 0 SHEET 2 AA3 2 HIS A 268 CYS A 269 -1 O HIS A 268 N ALA A 257 SHEET 1 AA4 2 LEU A 260 ARG A 261 0 SHEET 2 AA4 2 GLY A 264 LEU A 265 -1 O GLY A 264 N ARG A 261 SHEET 1 AA5 9 GLN B 157 TYR B 162 0 SHEET 2 AA5 9 HIS B 128 THR B 133 1 N PHE B 131 O MET B 161 SHEET 3 AA5 9 ARG B 187 GLU B 194 1 O ILE B 191 N VAL B 130 SHEET 4 AA5 9 GLY B 220 GLY B 227 -1 O VAL B 226 N ILE B 188 SHEET 5 AA5 9 LEU B 20 ALA B 27 -1 N LEU B 22 O ILE B 225 SHEET 6 AA5 9 PHE B 239 PHE B 248 -1 O PHE B 239 N VAL B 21 SHEET 7 AA5 9 THR B 380 SER B 388 -1 O THR B 383 N ALA B 245 SHEET 8 AA5 9 PHE B 369 GLY B 376 -1 N LEU B 372 O VAL B 384 SHEET 9 AA5 9 PHE B 301 LEU B 304 1 N ILE B 303 O LEU B 373 SHEET 1 AA6 2 TRP B 32 ASP B 34 0 SHEET 2 AA6 2 LYS B 69 HIS B 71 -1 O ARG B 70 N ILE B 33 SHEET 1 AA7 2 LEU B 256 ALA B 257 0 SHEET 2 AA7 2 HIS B 268 CYS B 269 -1 O HIS B 268 N ALA B 257 SHEET 1 AA8 2 LEU B 260 ARG B 261 0 SHEET 2 AA8 2 GLY B 264 LEU B 265 -1 O GLY B 264 N ARG B 261 LINK SG CYS A 166 CAB 6JN A 401 1555 1555 1.95 LINK SG CYS B 166 CAB 6JN B 401 1555 1555 1.95 CISPEP 1 MET A 139 PRO A 140 0 -2.20 CISPEP 2 MET B 139 PRO B 140 0 -2.27 SITE 1 AC1 12 ARG A 134 GLY A 165 CYS A 166 PHE A 217 SITE 2 AC1 12 LEU A 258 HIS A 305 GLY A 307 ASN A 338 SITE 3 AC1 12 SER A 340 GLY A 376 PRO A 377 HOH A 508 SITE 1 AC2 6 HIS A 259 ARG A 261 GLN B 97 ASP B 138 SITE 2 AC2 6 HOH B 550 HOH B 610 SITE 1 AC3 7 GLU A 16 GLY A 17 GLU A 181 SER A 228 SITE 2 AC3 7 HOH A 624 HOH A 628 ASN B 182 SITE 1 AC4 7 LYS A 236 PRO A 237 ARG A 352 THR A 363 SITE 2 AC4 7 PRO A 390 HOH A 557 HOH A 612 SITE 1 AC5 6 SER B 243 ALA B 244 ALA B 245 ALA B 288 SITE 2 AC5 6 THR B 383 HOH B 570 SITE 1 AC6 14 ARG B 134 GLY B 165 PHE B 167 ALA B 168 SITE 2 AC6 14 PHE B 217 LEU B 258 HIS B 305 GLY B 307 SITE 3 AC6 14 ASN B 338 SER B 340 PHE B 375 GLY B 376 SITE 4 AC6 14 PRO B 377 HOH B 531 CRYST1 108.144 108.144 191.075 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009247 0.005339 0.000000 0.00000 SCALE2 0.000000 0.010677 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005234 0.00000