HEADER MEMBRANE PROTEIN 10-JAN-19 6J5A TITLE CRYO-EM STRUCTURE OF THE MAMMALIAN DP-STATE ATP SYNTHASE FO SECTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP SYNTHASE PERIPHERAL STALK-MEMBRANE SUBUNIT B; COMPND 3 CHAIN: b; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: ATP SYNTHASE SUBUNIT D, MITOCHONDRIAL; COMPND 6 CHAIN: d; COMPND 7 MOL_ID: 3; COMPND 8 MOLECULE: ATP SYNTHASE SUBUNIT E, MITOCHONDRIAL; COMPND 9 CHAIN: e; COMPND 10 MOL_ID: 4; COMPND 11 MOLECULE: ATP SYNTHASE SUBUNIT F, MITOCHONDRIAL; COMPND 12 CHAIN: f; COMPND 13 SYNONYM: ATP SYNTHASE MEMBRANE SUBUNIT F; COMPND 14 MOL_ID: 5; COMPND 15 MOLECULE: ATP SYNTHASE SUBUNIT G, MITOCHONDRIAL; COMPND 16 CHAIN: g; COMPND 17 MOL_ID: 6; COMPND 18 MOLECULE: ATP SYNTHASE MEMBRANE SUBUNIT DAPIT; COMPND 19 CHAIN: i; COMPND 20 MOL_ID: 7; COMPND 21 MOLECULE: SUBUNIT K ANALOG; COMPND 22 CHAIN: k; COMPND 23 MOL_ID: 8; COMPND 24 MOLECULE: ATP SYNTHASE PROTEIN 8; COMPND 25 CHAIN: 8; COMPND 26 SYNONYM: A6L,F-ATPASE SUBUNIT 8; COMPND 27 MOL_ID: 9; COMPND 28 MOLECULE: ATP SYNTHASE SUBUNIT A; COMPND 29 CHAIN: a; COMPND 30 SYNONYM: F-ATPASE PROTEIN 6; COMPND 31 MOL_ID: 10; COMPND 32 MOLECULE: MITOCHONDRIAL H+ TRANSPORTING ATP SYNTHASE SUBUNIT C COMPND 33 ISOFORM 1; COMPND 34 CHAIN: K, L, M, N, O, P, Q, R; COMPND 35 MOL_ID: 11; COMPND 36 MOLECULE: ATP SYNTHASE MEMBRANE SUBUNIT 6.8PL; COMPND 37 CHAIN: u SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 3 ORGANISM_COMMON: PIG; SOURCE 4 ORGANISM_TAXID: 9823; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 7 ORGANISM_COMMON: PIG; SOURCE 8 ORGANISM_TAXID: 9823; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 11 ORGANISM_TAXID: 9823; SOURCE 12 MOL_ID: 4; SOURCE 13 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 14 ORGANISM_COMMON: PIG; SOURCE 15 ORGANISM_TAXID: 9823; SOURCE 16 MOL_ID: 5; SOURCE 17 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 18 ORGANISM_COMMON: PIG; SOURCE 19 ORGANISM_TAXID: 9823; SOURCE 20 MOL_ID: 6; SOURCE 21 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 22 ORGANISM_COMMON: PIG; SOURCE 23 ORGANISM_TAXID: 9823; SOURCE 24 MOL_ID: 7; SOURCE 25 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 26 ORGANISM_TAXID: 9823; SOURCE 27 MOL_ID: 8; SOURCE 28 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 29 ORGANISM_COMMON: PIG; SOURCE 30 ORGANISM_TAXID: 9823; SOURCE 31 MOL_ID: 9; SOURCE 32 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 33 ORGANISM_COMMON: PIG; SOURCE 34 ORGANISM_TAXID: 9823; SOURCE 35 MOL_ID: 10; SOURCE 36 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 37 ORGANISM_COMMON: PIG; SOURCE 38 ORGANISM_TAXID: 9823; SOURCE 39 MOL_ID: 11; SOURCE 40 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 41 ORGANISM_COMMON: PIG; SOURCE 42 ORGANISM_TAXID: 9823 KEYWDS MEMBRANE PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR J.GU,L.ZHANG,J.YI,M.YANG REVDAT 3 27-MAR-24 6J5A 1 REMARK REVDAT 2 06-NOV-19 6J5A 1 CRYST1 REVDAT 1 26-JUN-19 6J5A 0 JRNL AUTH J.GU,L.ZHANG,S.ZONG,R.GUO,T.LIU,J.YI,P.WANG,W.ZHUO,M.YANG JRNL TITL CRYO-EM STRUCTURE OF THE MAMMALIAN ATP SYNTHASE TETRAMER JRNL TITL 2 BOUND WITH INHIBITORY PROTEIN IF1. JRNL REF SCIENCE V. 364 1068 2019 JRNL REFN ESSN 1095-9203 JRNL PMID 31197009 JRNL DOI 10.1126/SCIENCE.AAW4852 REMARK 2 REMARK 2 RESOLUTION. 4.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 4.350 REMARK 3 NUMBER OF PARTICLES : 114103 REMARK 3 CTF CORRECTION METHOD : NONE REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 6J5A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1300010495. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : CRYO-EM STRUCTURE OF THE REMARK 245 MAMMALIAN DP-STATE ATP SYNTHASE REMARK 245 FO SECTION REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K2 SUMMIT (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 156.00 REMARK 245 ILLUMINATION MODE : OTHER REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTADECAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: b, d, e, f, g, i, k, 8, a, K, REMARK 350 AND CHAINS: L, M, N, O, P, Q, R, u REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET a 1 REMARK 465 ASN a 225 REMARK 465 THR a 226 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO b 3 CG CD REMARK 470 PRO b 4 CG CD REMARK 470 LEU b 5 CG CD1 CD2 REMARK 470 PRO b 6 CG CD REMARK 470 GLU b 7 CG CD OE1 OE2 REMARK 470 HIS b 8 CG ND1 CD2 CE1 NE2 REMARK 470 LYS b 11 CG CD CE NZ REMARK 470 VAL b 12 CG1 CG2 REMARK 470 ARG b 13 CG CD NE CZ NH1 NH2 REMARK 470 LEU b 14 CG CD1 CD2 REMARK 470 LEU b 16 CG CD1 CD2 REMARK 470 ILE b 17 CG1 CG2 CD1 REMARK 470 PRO b 18 CG CD REMARK 470 GLU b 19 CG CD OE1 OE2 REMARK 470 GLU b 20 CG CD OE1 OE2 REMARK 470 PHE b 21 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PHE b 22 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN b 23 CG CD OE1 NE2 REMARK 470 PHE b 24 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU b 25 CG CD1 CD2 REMARK 470 TYR b 26 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 PRO b 27 CG CD REMARK 470 LYS b 28 CG CD CE NZ REMARK 470 THR b 29 OG1 CG2 REMARK 470 VAL b 31 CG1 CG2 REMARK 470 THR b 32 OG1 CG2 REMARK 470 PRO b 34 CG CD REMARK 470 TYR b 35 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 VAL b 36 CG1 CG2 REMARK 470 LEU b 37 CG CD1 CD2 REMARK 470 THR b 39 OG1 CG2 REMARK 470 LEU b 41 CG CD1 CD2 REMARK 470 ILE b 42 CG1 CG2 CD1 REMARK 470 LEU b 43 CG CD1 CD2 REMARK 470 TYR b 44 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU b 45 CG CD1 CD2 REMARK 470 LEU b 46 CG CD1 CD2 REMARK 470 SER b 47 OG REMARK 470 LYS b 48 CG CD CE NZ REMARK 470 GLU b 49 CG CD OE1 OE2 REMARK 470 ILE b 50 CG1 CG2 CD1 REMARK 470 TYR b 51 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 VAL b 52 CG1 CG2 REMARK 470 ILE b 53 CG1 CG2 CD1 REMARK 470 THR b 54 OG1 CG2 REMARK 470 GLU b 56 CG CD OE1 OE2 REMARK 470 THR b 57 OG1 CG2 REMARK 470 PHE b 58 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ILE b 61 CG1 CG2 CD1 REMARK 470 THR b 63 OG1 CG2 REMARK 470 ILE b 64 CG1 CG2 CD1 REMARK 470 TYR b 74 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 PHE b 81 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PRO d 126 CG CD REMARK 470 PHE d 127 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP d 128 CG OD1 OD2 REMARK 470 GLN d 129 CG CD OE1 NE2 REMARK 470 MET d 130 CG SD CE REMARK 470 THR d 131 OG1 CG2 REMARK 470 ILE d 132 CG1 CG2 CD1 REMARK 470 GLU d 133 CG CD OE1 OE2 REMARK 470 ASP d 134 CG OD1 OD2 REMARK 470 LEU d 135 CG CD1 CD2 REMARK 470 ASN d 136 CG OD1 ND2 REMARK 470 GLU d 137 CG CD OE1 OE2 REMARK 470 VAL d 138 CG1 CG2 REMARK 470 PHE d 139 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PRO d 140 CG CD REMARK 470 GLU d 141 CG CD OE1 OE2 REMARK 470 THR d 142 OG1 CG2 REMARK 470 LYS d 143 CG CD CE NZ REMARK 470 LEU d 144 CG CD1 CD2 REMARK 470 ASP d 145 CG OD1 OD2 REMARK 470 LYS d 146 CG CD CE NZ REMARK 470 LYS d 147 CG CD CE NZ REMARK 470 LYS d 148 CG CD CE NZ REMARK 470 TYR d 149 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 SER f 2 OG REMARK 470 VAL f 3 CG1 CG2 REMARK 470 VAL f 4 CG1 CG2 REMARK 470 PRO f 5 CG CD REMARK 470 LEU f 6 CG CD1 CD2 REMARK 470 LYS f 7 CG CD CE NZ REMARK 470 ASP f 8 CG OD1 OD2 REMARK 470 ARG f 9 CG CD NE CZ NH1 NH2 REMARK 470 ARG f 10 CG CD NE CZ NH1 NH2 REMARK 470 LEU f 11 CG CD1 CD2 REMARK 470 LEU f 12 CG CD1 CD2 REMARK 470 GLU f 13 CG CD OE1 OE2 REMARK 470 VAL f 14 CG1 CG2 REMARK 470 LYS f 15 CG CD CE NZ REMARK 470 LEU f 16 CG CD1 CD2 REMARK 470 GLU f 18 CG CD OE1 OE2 REMARK 470 LEU f 19 CG CD1 CD2 REMARK 470 PRO f 20 CG CD REMARK 470 SER f 21 OG REMARK 470 TRP f 22 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP f 22 CZ3 CH2 REMARK 470 ILE f 23 CG1 CG2 CD1 REMARK 470 LEU f 24 CG CD1 CD2 REMARK 470 MET f 25 CG SD CE REMARK 470 ARG f 26 CG CD NE CZ NH1 NH2 REMARK 470 ASP f 27 CG OD1 OD2 REMARK 470 PHE f 28 CG CD1 CD2 CE1 CE2 CZ REMARK 470 THR f 29 OG1 CG2 REMARK 470 PRO f 30 CG CD REMARK 470 SER f 31 OG REMARK 470 ILE f 33 CG1 CG2 CD1 REMARK 470 PHE f 37 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN f 38 CG CD OE1 NE2 REMARK 470 ARG f 39 CG CD NE CZ NH1 NH2 REMARK 470 TYR f 41 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 TYR f 42 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG f 43 CG CD NE CZ NH1 NH2 REMARK 470 TYR f 44 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 TYR f 45 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASN f 46 CG OD1 ND2 REMARK 470 LYS f 47 CG CD CE NZ REMARK 470 TYR f 48 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 VAL f 49 CG1 CG2 REMARK 470 ASN f 50 CG OD1 ND2 REMARK 470 VAL f 51 CG1 CG2 REMARK 470 LYS f 52 CG CD CE NZ REMARK 470 LYS f 53 CG CD CE NZ REMARK 470 LYS f 85 CG CD CE NZ REMARK 470 TYR f 86 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN i 8 N REMARK 470 LYS i 15 CG CD CE NZ REMARK 470 LYS i 16 CG CD CE NZ REMARK 470 TYR i 34 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU i 42 CG CD1 CD2 REMARK 470 TYR i 43 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG i 47 CG CD NE CZ NH1 NH2 REMARK 470 LYS i 49 CG CD CE NZ REMARK 470 ASN a 4 CG OD1 ND2 REMARK 470 PHE a 9 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ILE a 10 CG1 CG2 CD1 REMARK 470 PRO a 34 CG CD REMARK 470 LYS a 35 CG CD CE NZ REMARK 470 ARG a 36 CG CD NE CZ NH1 NH2 REMARK 470 PHE a 204 CG CD1 CD2 CE1 CE2 CZ REMARK 470 MET N 60 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O UNK e 21 N UNK e 25 1.78 REMARK 500 O LYS f 53 O ARG a 41 1.88 REMARK 500 O UNK e 21 CB UNK e 25 1.94 REMARK 500 O GLU f 13 N GLU f 18 1.96 REMARK 500 O UNK e 22 CB UNK e 26 1.97 REMARK 500 O UNK e 22 N UNK e 26 2.03 REMARK 500 CA VAL f 14 O GLU f 18 2.05 REMARK 500 CB TRP f 22 O LYS a 35 2.05 REMARK 500 CB LEU a 173 CE MET O 66 2.13 REMARK 500 CD1 ILE R 9 CB UNK u 26 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 UNK g 38 C - N - CA ANGL. DEV. = 15.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR b 51 -71.59 -98.99 REMARK 500 VAL b 52 -6.25 -141.35 REMARK 500 ALA b 55 -162.13 -160.13 REMARK 500 GLN d 129 41.18 -97.43 REMARK 500 ASN d 136 30.70 -95.33 REMARK 500 UNK e 2 110.72 60.50 REMARK 500 LEU f 19 43.80 -176.27 REMARK 500 PRO f 20 -175.11 -36.26 REMARK 500 SER f 21 -146.70 -87.61 REMARK 500 TRP f 22 80.98 70.19 REMARK 500 LEU f 24 -1.95 83.47 REMARK 500 MET f 25 17.54 -147.59 REMARK 500 TYR f 44 -83.35 -81.99 REMARK 500 TYR f 45 -67.76 -137.17 REMARK 500 ASN f 46 -20.62 -146.53 REMARK 500 LEU f 78 44.67 -102.15 REMARK 500 HIS f 80 -6.50 63.22 REMARK 500 LEU f 83 48.86 -88.63 REMARK 500 ARG f 84 -165.32 -165.23 REMARK 500 UNK g 34 33.31 -97.22 REMARK 500 UNK g 38 92.34 130.92 REMARK 500 UNK g 40 179.84 51.02 REMARK 500 UNK g 41 53.79 -140.53 REMARK 500 UNK g 46 -13.91 -153.37 REMARK 500 UNK g 47 80.82 54.57 REMARK 500 UNK g 49 -88.71 -101.52 REMARK 500 ARG i 26 58.43 -95.23 REMARK 500 UNK k 6 -166.01 -73.31 REMARK 500 UNK k 7 -103.40 -71.62 REMARK 500 UNK k 9 179.25 57.64 REMARK 500 UNK k 10 -66.61 51.92 REMARK 500 SER 8 7 -87.25 -63.99 REMARK 500 THR 8 8 166.58 159.89 REMARK 500 TRP 8 9 -20.60 72.61 REMARK 500 PHE 8 10 3.34 57.55 REMARK 500 THR 8 12 -141.22 -73.38 REMARK 500 ILE 8 13 -32.84 -25.19 REMARK 500 GLU a 3 -60.24 -97.58 REMARK 500 PRO a 27 21.59 -77.37 REMARK 500 LYS a 35 53.11 -97.40 REMARK 500 ASN a 39 -167.70 -107.76 REMARK 500 ARG a 41 15.67 53.70 REMARK 500 TYR a 119 -41.42 -130.45 REMARK 500 THR a 121 -11.96 71.42 REMARK 500 THR a 133 113.11 -39.59 REMARK 500 LEU a 137 50.90 -141.92 REMARK 500 ALA a 180 34.45 -97.10 REMARK 500 LEU a 181 50.48 -116.50 REMARK 500 SER K 41 51.65 -118.17 REMARK 500 GLN K 44 -159.81 -78.75 REMARK 500 REMARK 500 THIS ENTRY HAS 62 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ILE f 23 LEU f 24 -133.31 REMARK 500 TYR f 44 TYR f 45 146.48 REMARK 500 THR 8 6 SER 8 7 -131.76 REMARK 500 SER 8 7 THR 8 8 142.49 REMARK 500 THR 8 8 TRP 8 9 140.95 REMARK 500 THR 8 12 ILE 8 13 -146.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-0670 RELATED DB: EMDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE OF THE CHAIN E CORRESPONDS TO Q03654 IN THE UNIPROT REMARK 999 DATABASE. THE SEQUENCE OF THE CHAIN G CORRESPONDS TO A0A480XS10 IN REMARK 999 THE UNIPROT DATABASE. THE SEQUENCE OF THE CHAIN U CORRESPONDS TO REMARK 999 F1S9V7 IN THE UNIPROT DATABASE. HOWEVER, THERE ARE UNK (UNKNOWN REMARK 999 RESIDUES) IN THESE CHAINS, AS THE AUTHORS DO NOT KNOW HOW THE REMARK 999 COORDINATES ALIGN WITH THE SEQUENCES. THEREFORE THE RESIDUES REMARK 999 NUMBERS ARE MEANINGLESS. AS FOR K CHAIN, THE AUTHORS DON’T REMARK 999 KNOW THE REFERENCE SEQUENCE IN THE UNIPROT DATABASE. DBREF1 6J5A b 3 84 UNP A0A286ZYM6_PIG DBREF2 6J5A b A0A286ZYM6 45 126 DBREF1 6J5A d 126 149 UNP A0A287B4I0_PIG DBREF2 6J5A d A0A287B4I0 127 150 DBREF 6J5A e 1 63 PDB 6J5A 6J5A 1 63 DBREF 6J5A f 1 87 UNP Q95339 ATPK_PIG 2 88 DBREF 6J5A g 1 84 PDB 6J5A 6J5A 1 84 DBREF 6J5A i 8 49 UNP F1RFD4 F1RFD4_PIG 9 50 DBREF 6J5A k 1 29 PDB 6J5A 6J5A 1 29 DBREF 6J5A 8 5 34 UNP Q35914 ATP8_PIG 5 34 DBREF 6J5A a 1 226 UNP Q35915 ATP6_PIG 1 226 DBREF 6J5A K 2 73 UNP Q4VT52 Q4VT52_PIG 63 134 DBREF 6J5A L 2 73 UNP Q4VT52 Q4VT52_PIG 63 134 DBREF 6J5A M 2 73 UNP Q4VT52 Q4VT52_PIG 63 134 DBREF 6J5A N 2 73 UNP Q4VT52 Q4VT52_PIG 63 134 DBREF 6J5A O 2 73 UNP Q4VT52 Q4VT52_PIG 63 134 DBREF 6J5A P 2 73 UNP Q4VT52 Q4VT52_PIG 63 134 DBREF 6J5A Q 2 73 UNP Q4VT52 Q4VT52_PIG 63 134 DBREF 6J5A R 2 73 UNP Q4VT52 Q4VT52_PIG 63 134 DBREF 6J5A u 1 42 PDB 6J5A 6J5A 1 42 SEQRES 1 b 82 PRO PRO LEU PRO GLU HIS GLY GLY LYS VAL ARG LEU GLY SEQRES 2 b 82 LEU ILE PRO GLU GLU PHE PHE GLN PHE LEU TYR PRO LYS SEQRES 3 b 82 THR GLY VAL THR GLY PRO TYR VAL LEU GLY THR GLY LEU SEQRES 4 b 82 ILE LEU TYR LEU LEU SER LYS GLU ILE TYR VAL ILE THR SEQRES 5 b 82 ALA GLU THR PHE SER ALA ILE SER THR ILE GLY VAL LEU SEQRES 6 b 82 VAL TYR ILE VAL LYS LYS TYR GLY ALA SER ILE GLY ALA SEQRES 7 b 82 PHE ALA ASP LYS SEQRES 1 d 24 PRO PHE ASP GLN MET THR ILE GLU ASP LEU ASN GLU VAL SEQRES 2 d 24 PHE PRO GLU THR LYS LEU ASP LYS LYS LYS TYR SEQRES 1 e 63 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 2 e 63 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 3 e 63 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 4 e 63 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 5 e 63 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 1 f 87 ALA SER VAL VAL PRO LEU LYS ASP ARG ARG LEU LEU GLU SEQRES 2 f 87 VAL LYS LEU GLY GLU LEU PRO SER TRP ILE LEU MET ARG SEQRES 3 f 87 ASP PHE THR PRO SER GLY ILE ALA GLY ALA PHE GLN ARG SEQRES 4 f 87 GLY TYR TYR ARG TYR TYR ASN LYS TYR VAL ASN VAL LYS SEQRES 5 f 87 LYS GLY SER VAL ALA GLY LEU SER MET VAL LEU ALA ALA SEQRES 6 f 87 TYR VAL VAL PHE ASN TYR CYS ARG SER TYR LYS GLU LEU SEQRES 7 f 87 LYS HIS GLU ARG LEU ARG LYS TYR HIS SEQRES 1 g 84 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 2 g 84 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 3 g 84 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 4 g 84 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 5 g 84 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 6 g 84 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 7 g 84 UNK UNK UNK UNK UNK UNK SEQRES 1 i 42 GLN PHE GLN PHE THR GLY ILE LYS LYS TYR PHE ASN SER SEQRES 2 i 42 TYR THR LEU THR GLY ARG MET ASN CYS VAL LEU ALA THR SEQRES 3 i 42 TYR GLY GLY ILE ALA LEU LEU VAL LEU TYR PHE LYS LEU SEQRES 4 i 42 ARG SER LYS SEQRES 1 k 29 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 2 k 29 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 3 k 29 UNK UNK UNK SEQRES 1 8 30 ASP THR SER THR TRP PHE ILE THR ILE THR SER MET ILE SEQRES 2 8 30 MET THR LEU PHE ILE LEU PHE GLN LEU LYS ILE SER ASN SEQRES 3 8 30 TYR SER TYR PRO SEQRES 1 a 226 MET ASN GLU ASN LEU PHE ALA SER PHE ILE ALA PRO THR SEQRES 2 a 226 MET MET GLY LEU PRO ILE VAL THR LEU ILE ILE MET PHE SEQRES 3 a 226 PRO SER LEU LEU PHE PRO THR PRO LYS ARG LEU ILE ASN SEQRES 4 a 226 ASN ARG THR ILE SER ILE GLN GLN TRP LEU ILE GLN LEU SEQRES 5 a 226 THR SER LYS GLN MET MET ALA ILE HIS ASN GLN LYS GLY SEQRES 6 a 226 GLN THR TRP SER LEU MET LEU MET SER LEU ILE MET PHE SEQRES 7 a 226 ILE GLY SER THR ASN ILE LEU GLY LEU LEU PRO HIS SER SEQRES 8 a 226 PHE THR PRO THR THR GLN LEU SER MET ASN LEU GLY MET SEQRES 9 a 226 ALA ILE PRO LEU TRP SER ALA THR VAL PHE THR GLY PHE SEQRES 10 a 226 ARG TYR LYS THR LYS THR SER LEU ALA HIS PHE LEU PRO SEQRES 11 a 226 GLN GLY THR PRO ALA LEU LEU ILE PRO MET LEU VAL ILE SEQRES 12 a 226 ILE GLU THR ILE SER LEU PHE ILE GLN PRO VAL ALA LEU SEQRES 13 a 226 ALA VAL ARG LEU THR ALA ASN ILE THR ALA GLY HIS LEU SEQRES 14 a 226 LEU ILE HIS LEU ILE GLY GLY ALA THR LEU ALA LEU LEU SEQRES 15 a 226 ASN ILE ASN THR MET THR ALA PHE ILE THR PHE THR ILE SEQRES 16 a 226 LEU ILE LEU LEU THR ILE LEU GLU PHE ALA VAL ALA LEU SEQRES 17 a 226 ILE GLN ALA TYR VAL PHE THR LEU LEU VAL SER LEU TYR SEQRES 18 a 226 LEU HIS ASP ASN THR SEQRES 1 K 72 ILE ASP THR ALA ALA LYS PHE ILE GLY ALA GLY ALA ALA SEQRES 2 K 72 THR VAL GLY VAL ALA GLY SER GLY ALA GLY ILE GLY THR SEQRES 3 K 72 VAL PHE GLY SER MET ILE ILE GLY TYR ALA ARG ASN PRO SEQRES 4 K 72 SER LEU LYS GLN GLN LEU PHE SER TYR ALA ILE LEU GLY SEQRES 5 K 72 PHE ALA LEU SER GLU ALA MET GLY LEU PHE CYS LEU MET SEQRES 6 K 72 VAL ALA PHE LEU ILE LEU PHE SEQRES 1 L 72 ILE ASP THR ALA ALA LYS PHE ILE GLY ALA GLY ALA ALA SEQRES 2 L 72 THR VAL GLY VAL ALA GLY SER GLY ALA GLY ILE GLY THR SEQRES 3 L 72 VAL PHE GLY SER MET ILE ILE GLY TYR ALA ARG ASN PRO SEQRES 4 L 72 SER LEU LYS GLN GLN LEU PHE SER TYR ALA ILE LEU GLY SEQRES 5 L 72 PHE ALA LEU SER GLU ALA MET GLY LEU PHE CYS LEU MET SEQRES 6 L 72 VAL ALA PHE LEU ILE LEU PHE SEQRES 1 M 72 ILE ASP THR ALA ALA LYS PHE ILE GLY ALA GLY ALA ALA SEQRES 2 M 72 THR VAL GLY VAL ALA GLY SER GLY ALA GLY ILE GLY THR SEQRES 3 M 72 VAL PHE GLY SER MET ILE ILE GLY TYR ALA ARG ASN PRO SEQRES 4 M 72 SER LEU LYS GLN GLN LEU PHE SER TYR ALA ILE LEU GLY SEQRES 5 M 72 PHE ALA LEU SER GLU ALA MET GLY LEU PHE CYS LEU MET SEQRES 6 M 72 VAL ALA PHE LEU ILE LEU PHE SEQRES 1 N 72 ILE ASP THR ALA ALA LYS PHE ILE GLY ALA GLY ALA ALA SEQRES 2 N 72 THR VAL GLY VAL ALA GLY SER GLY ALA GLY ILE GLY THR SEQRES 3 N 72 VAL PHE GLY SER MET ILE ILE GLY TYR ALA ARG ASN PRO SEQRES 4 N 72 SER LEU LYS GLN GLN LEU PHE SER TYR ALA ILE LEU GLY SEQRES 5 N 72 PHE ALA LEU SER GLU ALA MET GLY LEU PHE CYS LEU MET SEQRES 6 N 72 VAL ALA PHE LEU ILE LEU PHE SEQRES 1 O 72 ILE ASP THR ALA ALA LYS PHE ILE GLY ALA GLY ALA ALA SEQRES 2 O 72 THR VAL GLY VAL ALA GLY SER GLY ALA GLY ILE GLY THR SEQRES 3 O 72 VAL PHE GLY SER MET ILE ILE GLY TYR ALA ARG ASN PRO SEQRES 4 O 72 SER LEU LYS GLN GLN LEU PHE SER TYR ALA ILE LEU GLY SEQRES 5 O 72 PHE ALA LEU SER GLU ALA MET GLY LEU PHE CYS LEU MET SEQRES 6 O 72 VAL ALA PHE LEU ILE LEU PHE SEQRES 1 P 72 ILE ASP THR ALA ALA LYS PHE ILE GLY ALA GLY ALA ALA SEQRES 2 P 72 THR VAL GLY VAL ALA GLY SER GLY ALA GLY ILE GLY THR SEQRES 3 P 72 VAL PHE GLY SER MET ILE ILE GLY TYR ALA ARG ASN PRO SEQRES 4 P 72 SER LEU LYS GLN GLN LEU PHE SER TYR ALA ILE LEU GLY SEQRES 5 P 72 PHE ALA LEU SER GLU ALA MET GLY LEU PHE CYS LEU MET SEQRES 6 P 72 VAL ALA PHE LEU ILE LEU PHE SEQRES 1 Q 72 ILE ASP THR ALA ALA LYS PHE ILE GLY ALA GLY ALA ALA SEQRES 2 Q 72 THR VAL GLY VAL ALA GLY SER GLY ALA GLY ILE GLY THR SEQRES 3 Q 72 VAL PHE GLY SER MET ILE ILE GLY TYR ALA ARG ASN PRO SEQRES 4 Q 72 SER LEU LYS GLN GLN LEU PHE SER TYR ALA ILE LEU GLY SEQRES 5 Q 72 PHE ALA LEU SER GLU ALA MET GLY LEU PHE CYS LEU MET SEQRES 6 Q 72 VAL ALA PHE LEU ILE LEU PHE SEQRES 1 R 72 ILE ASP THR ALA ALA LYS PHE ILE GLY ALA GLY ALA ALA SEQRES 2 R 72 THR VAL GLY VAL ALA GLY SER GLY ALA GLY ILE GLY THR SEQRES 3 R 72 VAL PHE GLY SER MET ILE ILE GLY TYR ALA ARG ASN PRO SEQRES 4 R 72 SER LEU LYS GLN GLN LEU PHE SER TYR ALA ILE LEU GLY SEQRES 5 R 72 PHE ALA LEU SER GLU ALA MET GLY LEU PHE CYS LEU MET SEQRES 6 R 72 VAL ALA PHE LEU ILE LEU PHE SEQRES 1 u 42 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 2 u 42 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 3 u 42 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 4 u 42 UNK UNK UNK HELIX 1 AA1 PRO b 3 VAL b 31 1 29 HELIX 2 AA2 LEU b 37 ILE b 42 1 6 HELIX 3 AA3 LEU b 43 LYS b 48 1 6 HELIX 4 AA4 GLU b 49 TYR b 51 5 3 HELIX 5 AA5 ILE b 61 ASP b 83 1 23 HELIX 6 AA6 GLU d 133 GLU d 137 5 5 HELIX 7 AA7 UNK e 5 UNK e 63 1 59 HELIX 8 AA8 SER f 2 LYS f 15 1 14 HELIX 9 AA9 ASP f 27 GLY f 35 1 9 HELIX 10 AB1 ALA f 36 TYR f 41 1 6 HELIX 11 AB2 TYR f 42 TYR f 44 5 3 HELIX 12 AB3 SER f 55 SER f 60 1 6 HELIX 13 AB4 MET f 61 TYR f 75 1 15 HELIX 14 AB5 UNK g 2 UNK g 32 1 31 HELIX 15 AB6 UNK g 60 UNK g 65 1 6 HELIX 16 AB7 UNK g 65 UNK g 84 1 20 HELIX 17 AB8 ILE i 14 ARG i 26 1 13 HELIX 18 AB9 MET i 27 SER i 48 1 22 HELIX 19 AC1 UNK k 12 UNK k 29 1 18 HELIX 20 AC2 THR 8 12 MET 8 16 5 5 HELIX 21 AC3 THR 8 19 ILE 8 28 1 10 HELIX 22 AC4 ILE a 19 ILE a 24 1 6 HELIX 23 AC5 MET a 25 LEU a 29 5 5 HELIX 24 AC6 ILE a 43 SER a 54 1 12 HELIX 25 AC7 TRP a 68 MET a 73 1 6 HELIX 26 AC8 MET a 73 THR a 82 1 10 HELIX 27 AC9 ILE a 84 LEU a 88 5 5 HELIX 28 AD1 THR a 93 THR a 96 5 4 HELIX 29 AD2 GLN a 97 LEU a 102 1 6 HELIX 30 AD3 ALA a 105 PHE a 117 1 13 HELIX 31 AD4 PHE a 150 ALA a 180 1 31 HELIX 32 AD5 THR a 186 LEU a 202 1 17 HELIX 33 AD6 VAL a 206 LEU a 222 1 17 HELIX 34 AD7 ASP K 3 THR K 15 1 13 HELIX 35 AD8 VAL K 18 ALA K 37 1 20 HELIX 36 AD9 GLN K 44 PHE K 73 1 30 HELIX 37 AE1 ASP L 3 THR L 15 1 13 HELIX 38 AE2 ALA L 19 GLY L 24 1 6 HELIX 39 AE3 GLY L 24 PHE L 29 1 6 HELIX 40 AE4 GLY L 30 GLY L 35 1 6 HELIX 41 AE5 GLN L 44 PHE L 73 1 30 HELIX 42 AE6 ASP M 3 ALA M 14 1 12 HELIX 43 AE7 GLY M 17 PHE M 29 1 13 HELIX 44 AE8 MET M 32 ASN M 39 1 8 HELIX 45 AE9 GLN M 44 LEU M 56 1 13 HELIX 46 AF1 GLY M 61 ILE M 71 1 11 HELIX 47 AF2 ASP N 3 ALA N 13 1 11 HELIX 48 AF3 ALA N 14 ALA N 19 5 6 HELIX 49 AF4 GLY N 20 ALA N 37 1 18 HELIX 50 AF5 GLN N 44 PHE N 63 1 20 HELIX 51 AF6 LEU N 65 PHE N 73 1 9 HELIX 52 AF7 ASP O 3 GLY O 12 1 10 HELIX 53 AF8 SER O 21 SER O 31 1 11 HELIX 54 AF9 MET O 32 ALA O 37 1 6 HELIX 55 AG1 GLN O 44 ILE O 71 1 28 HELIX 56 AG2 ASP P 3 ALA P 14 1 12 HELIX 57 AG3 GLY P 17 GLY P 26 1 10 HELIX 58 AG4 GLY P 26 SER P 31 1 6 HELIX 59 AG5 MET P 32 ALA P 37 1 6 HELIX 60 AG6 GLN P 44 PHE P 73 1 30 HELIX 61 AG7 THR Q 4 THR Q 15 1 12 HELIX 62 AG8 VAL Q 18 GLY Q 24 1 7 HELIX 63 AG9 THR Q 27 ALA Q 37 1 11 HELIX 64 AH1 GLN Q 44 PHE Q 73 1 30 HELIX 65 AH2 THR R 4 VAL R 16 1 13 HELIX 66 AH3 GLY R 17 ALA R 37 1 21 HELIX 67 AH4 GLN R 44 PHE R 73 1 30 HELIX 68 AH5 UNK u 3 UNK u 9 1 7 HELIX 69 AH6 UNK u 16 UNK u 35 1 20 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000