HEADER TRANSFERASE 12-JAN-19 6J61 TITLE CRYSTAL STRUCTURE OF THYMIDYLATE SYNTHASE, THY1, FROM THERMUS TITLE 2 THERMOPHILUS HAVING AN EXTRA C TERMINAL DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: FLAVIN-DEPENDENT THYMIDYLATE SYNTHASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: FDTS,FAD-DEPENDENT THYMIDYLATE SYNTHASE,THYMIDYLATE SYNTHASE COMPND 5 THYX,TSASE; COMPND 6 EC: 2.1.1.148; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS (STRAIN HB8 / ATCC 27634 / SOURCE 3 DSM 579); SOURCE 4 ORGANISM_TAXID: 300852; SOURCE 5 STRAIN: HB8 / ATCC 27634 / DSM 579; SOURCE 6 GENE: THYX, TTHA1096; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET-11A KEYWDS THYMIDYLATE SYNTHASE, PYRIMIDINE NUCLEOTIDE BIOSYNTHETIC PATHWAY, C- KEYWDS 2 TERMINAL DOMAIN, STRUCTURAL GENOMICS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.OGAWA,G.SAMPEI,G.KAWAI REVDAT 3 22-NOV-23 6J61 1 REMARK REVDAT 2 03-JUL-19 6J61 1 JRNL REVDAT 1 26-JUN-19 6J61 0 JRNL AUTH A.OGAWA,G.SAMPEI,G.KAWAI JRNL TITL CRYSTAL STRUCTURE OF THE FLAVIN-DEPENDENT THYMIDYLATE JRNL TITL 2 SYNTHASE THY1 FROM THERMUS THERMOPHILUS WITH AN EXTRA JRNL TITL 3 C-TERMINAL DOMAIN. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 75 450 2019 JRNL REFN ESSN 2053-230X JRNL PMID 31204692 JRNL DOI 10.1107/S2053230X19007192 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.3 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.37 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 367087.330 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 93.3 REMARK 3 NUMBER OF REFLECTIONS : 74813 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.279 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.800 REMARK 3 FREE R VALUE TEST SET COUNT : 7335 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.66 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 84.10 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 10240 REMARK 3 BIN R VALUE (WORKING SET) : 0.3090 REMARK 3 BIN FREE R VALUE : 0.3620 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 1012 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.011 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7920 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 252 REMARK 3 SOLVENT ATOMS : 72 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -8.29000 REMARK 3 B22 (A**2) : 17.56000 REMARK 3 B33 (A**2) : -9.27000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -2.75000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.33 REMARK 3 ESD FROM SIGMAA (A) : 0.39 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.42 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.46 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 20.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.800 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.230 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.040 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.920 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.890 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : 0.38 REMARK 3 BSOL : 56.61 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : CNS_TOPPAR/PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : CNS_TOPPAR/WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : CNS_TOPPAR/ION.PARAM REMARK 3 PARAMETER FILE 4 : CNS_TOPPAR/FAD.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : CNS_TOPPAR/PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : CNS_TOPPAR/WATER.TOP REMARK 3 TOPOLOGY FILE 3 : CNS_TOPPAR/ION.TOP REMARK 3 TOPOLOGY FILE 4 : FAD.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 6J61 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1300010406. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-DEC-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU JUPITER 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 1.97.9 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 1.97.7 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 79925 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.9700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.42500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.770 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1O2B REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50% 2-ETHOXYETHANOL, 0.1 M NA/K REMARK 280 PHOSPHATE (PH6.2), PH 8.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 72.01350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.18100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 72.01350 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 34.18100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 28060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -191.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 GLY A 3 REMARK 465 PRO A 4 REMARK 465 ALA A 112 REMARK 465 LYS A 113 REMARK 465 ARG A 114 REMARK 465 ASN A 115 REMARK 465 LYS A 116 REMARK 465 GLN A 117 REMARK 465 ALA A 118 REMARK 465 SER A 119 REMARK 465 GLU A 120 REMARK 465 GLY A 121 REMARK 465 ALA A 122 REMARK 465 LEU A 123 REMARK 465 LEU A 124 REMARK 465 ASP A 125 REMARK 465 GLU A 126 REMARK 465 GLU A 127 REMARK 465 ALA A 128 REMARK 465 LEU A 129 REMARK 465 ALA A 130 REMARK 465 PRO A 266 REMARK 465 GLY A 267 REMARK 465 GLU A 268 REMARK 465 ALA A 269 REMARK 465 LEU A 270 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 GLY B 3 REMARK 465 PRO B 4 REMARK 465 LYS B 110 REMARK 465 GLN B 111 REMARK 465 ALA B 112 REMARK 465 LYS B 113 REMARK 465 ARG B 114 REMARK 465 ASN B 115 REMARK 465 LYS B 116 REMARK 465 GLN B 117 REMARK 465 ALA B 118 REMARK 465 SER B 119 REMARK 465 GLU B 120 REMARK 465 GLY B 121 REMARK 465 ALA B 122 REMARK 465 LEU B 123 REMARK 465 LEU B 124 REMARK 465 ASP B 125 REMARK 465 GLU B 126 REMARK 465 GLU B 127 REMARK 465 ALA B 128 REMARK 465 LEU B 129 REMARK 465 ALA B 130 REMARK 465 GLY B 265 REMARK 465 PRO B 266 REMARK 465 GLY B 267 REMARK 465 GLU B 268 REMARK 465 ALA B 269 REMARK 465 LEU B 270 REMARK 465 MET C 1 REMARK 465 GLU C 2 REMARK 465 GLY C 3 REMARK 465 PRO C 4 REMARK 465 LYS C 110 REMARK 465 GLN C 111 REMARK 465 ALA C 112 REMARK 465 LYS C 113 REMARK 465 ARG C 114 REMARK 465 ASN C 115 REMARK 465 LYS C 116 REMARK 465 GLN C 117 REMARK 465 ALA C 118 REMARK 465 SER C 119 REMARK 465 GLU C 120 REMARK 465 GLY C 121 REMARK 465 ALA C 122 REMARK 465 LEU C 123 REMARK 465 LEU C 124 REMARK 465 ASP C 125 REMARK 465 GLU C 126 REMARK 465 GLU C 127 REMARK 465 ALA C 128 REMARK 465 LEU C 129 REMARK 465 ALA C 130 REMARK 465 PRO C 266 REMARK 465 GLY C 267 REMARK 465 GLU C 268 REMARK 465 ALA C 269 REMARK 465 LEU C 270 REMARK 465 MET D 1 REMARK 465 GLU D 2 REMARK 465 GLY D 3 REMARK 465 PRO D 4 REMARK 465 ALA D 112 REMARK 465 LYS D 113 REMARK 465 ARG D 114 REMARK 465 ASN D 115 REMARK 465 LYS D 116 REMARK 465 GLN D 117 REMARK 465 ALA D 118 REMARK 465 SER D 119 REMARK 465 GLU D 120 REMARK 465 GLY D 121 REMARK 465 ALA D 122 REMARK 465 LEU D 123 REMARK 465 LEU D 124 REMARK 465 ASP D 125 REMARK 465 GLU D 126 REMARK 465 GLU D 127 REMARK 465 ALA D 128 REMARK 465 LEU D 129 REMARK 465 ALA D 130 REMARK 465 PRO D 266 REMARK 465 GLY D 267 REMARK 465 GLU D 268 REMARK 465 ALA D 269 REMARK 465 LEU D 270 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 10 -163.45 58.61 REMARK 500 LYS A 40 -124.13 -144.48 REMARK 500 ARG A 157 2.50 -63.06 REMARK 500 LEU B 10 -179.66 68.99 REMARK 500 LYS B 12 -14.99 -144.75 REMARK 500 PHE B 14 165.99 178.80 REMARK 500 LYS B 40 -158.01 -155.34 REMARK 500 THR B 85 41.37 -78.57 REMARK 500 PRO B 105 152.47 -48.97 REMARK 500 LEU B 220 -73.95 -42.90 REMARK 500 LEU B 236 -61.50 -91.91 REMARK 500 LEU C 10 -157.44 60.06 REMARK 500 LYS C 40 -121.61 -134.81 REMARK 500 PHE C 81 1.37 -69.97 REMARK 500 LEU C 219 -79.49 -106.38 REMARK 500 PRO C 239 -36.98 -38.00 REMARK 500 SER C 248 13.91 -68.44 REMARK 500 PHE C 264 -86.72 -118.19 REMARK 500 LEU D 10 -145.52 62.39 REMARK 500 LYS D 12 -4.20 -144.50 REMARK 500 LYS D 40 -89.90 -98.17 REMARK 500 GLU D 100 74.72 -58.01 REMARK 500 LEU D 219 -58.01 -157.01 REMARK 500 LEU D 237 -169.90 -117.27 REMARK 500 PHE D 264 61.11 -117.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 C 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 C 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD D 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 D 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 D 302 DBREF 6J61 A 1 270 UNP Q5SJB8 THYX_THET8 1 270 DBREF 6J61 B 1 270 UNP Q5SJB8 THYX_THET8 1 270 DBREF 6J61 C 1 270 UNP Q5SJB8 THYX_THET8 1 270 DBREF 6J61 D 1 270 UNP Q5SJB8 THYX_THET8 1 270 SEQRES 1 A 270 MET GLU GLY PRO LEU THR ILE PRO VAL LEU ASP LYS GLY SEQRES 2 A 270 PHE VAL ARG LEU VAL ASP GLN MET GLY ASP ASP ARG ALA SEQRES 3 A 270 ILE VAL GLN ALA ALA ARG VAL SER TYR GLY GLU GLY THR SEQRES 4 A 270 LYS THR VAL ARG GLU ASP ALA ALA LEU ILE ASP TYR LEU SEQRES 5 A 270 MET ARG HIS ARG HIS THR SER PRO PHE GLU MET VAL VAL SEQRES 6 A 270 PHE LYS PHE HIS VAL LYS ALA PRO ILE PHE VAL ALA ARG SEQRES 7 A 270 GLN TRP PHE ARG HIS ARG THR ALA SER VAL ASN GLU ILE SEQRES 8 A 270 SER GLY ARG TYR SER ILE LEU LYS GLU GLU PHE TYR GLU SEQRES 9 A 270 PRO GLU ALA PHE ARG LYS GLN ALA LYS ARG ASN LYS GLN SEQRES 10 A 270 ALA SER GLU GLY ALA LEU LEU ASP GLU GLU ALA LEU ALA SEQRES 11 A 270 LEU LEU ARG LYS VAL GLN GLN GLU ALA TYR GLY ALA TYR SEQRES 12 A 270 ARG ALA LEU LEU GLU LYS GLY VAL ALA ARG GLU MET ALA SEQRES 13 A 270 ARG MET VAL LEU PRO LEU ASN LEU TYR THR GLU PHE TYR SEQRES 14 A 270 TRP LYS GLN ASP LEU HIS ASN LEU PHE HIS PHE LEU LYS SEQRES 15 A 270 LEU ARG LEU ALA PRO GLU ALA GLN TRP GLU ILE ARG GLN SEQRES 16 A 270 TYR ALA ARG ALA ILE ALA GLU ILE VAL LYS GLU ARG VAL SEQRES 17 A 270 PRO LEU ALA TRP ALA ALA PHE GLU GLU HIS LEU LEU GLU SEQRES 18 A 270 GLY ALA PHE LEU SER ARG THR GLU LEU ARG ALA LEU ARG SEQRES 19 A 270 GLY LEU LEU THR PRO GLU VAL TYR GLU LYS ALA LEU SER SEQRES 20 A 270 SER LEU GLY LEU GLY GLY SER ARG LEU LYS GLU ALA LEU SEQRES 21 A 270 GLU LYS VAL PHE GLY PRO GLY GLU ALA LEU SEQRES 1 B 270 MET GLU GLY PRO LEU THR ILE PRO VAL LEU ASP LYS GLY SEQRES 2 B 270 PHE VAL ARG LEU VAL ASP GLN MET GLY ASP ASP ARG ALA SEQRES 3 B 270 ILE VAL GLN ALA ALA ARG VAL SER TYR GLY GLU GLY THR SEQRES 4 B 270 LYS THR VAL ARG GLU ASP ALA ALA LEU ILE ASP TYR LEU SEQRES 5 B 270 MET ARG HIS ARG HIS THR SER PRO PHE GLU MET VAL VAL SEQRES 6 B 270 PHE LYS PHE HIS VAL LYS ALA PRO ILE PHE VAL ALA ARG SEQRES 7 B 270 GLN TRP PHE ARG HIS ARG THR ALA SER VAL ASN GLU ILE SEQRES 8 B 270 SER GLY ARG TYR SER ILE LEU LYS GLU GLU PHE TYR GLU SEQRES 9 B 270 PRO GLU ALA PHE ARG LYS GLN ALA LYS ARG ASN LYS GLN SEQRES 10 B 270 ALA SER GLU GLY ALA LEU LEU ASP GLU GLU ALA LEU ALA SEQRES 11 B 270 LEU LEU ARG LYS VAL GLN GLN GLU ALA TYR GLY ALA TYR SEQRES 12 B 270 ARG ALA LEU LEU GLU LYS GLY VAL ALA ARG GLU MET ALA SEQRES 13 B 270 ARG MET VAL LEU PRO LEU ASN LEU TYR THR GLU PHE TYR SEQRES 14 B 270 TRP LYS GLN ASP LEU HIS ASN LEU PHE HIS PHE LEU LYS SEQRES 15 B 270 LEU ARG LEU ALA PRO GLU ALA GLN TRP GLU ILE ARG GLN SEQRES 16 B 270 TYR ALA ARG ALA ILE ALA GLU ILE VAL LYS GLU ARG VAL SEQRES 17 B 270 PRO LEU ALA TRP ALA ALA PHE GLU GLU HIS LEU LEU GLU SEQRES 18 B 270 GLY ALA PHE LEU SER ARG THR GLU LEU ARG ALA LEU ARG SEQRES 19 B 270 GLY LEU LEU THR PRO GLU VAL TYR GLU LYS ALA LEU SER SEQRES 20 B 270 SER LEU GLY LEU GLY GLY SER ARG LEU LYS GLU ALA LEU SEQRES 21 B 270 GLU LYS VAL PHE GLY PRO GLY GLU ALA LEU SEQRES 1 C 270 MET GLU GLY PRO LEU THR ILE PRO VAL LEU ASP LYS GLY SEQRES 2 C 270 PHE VAL ARG LEU VAL ASP GLN MET GLY ASP ASP ARG ALA SEQRES 3 C 270 ILE VAL GLN ALA ALA ARG VAL SER TYR GLY GLU GLY THR SEQRES 4 C 270 LYS THR VAL ARG GLU ASP ALA ALA LEU ILE ASP TYR LEU SEQRES 5 C 270 MET ARG HIS ARG HIS THR SER PRO PHE GLU MET VAL VAL SEQRES 6 C 270 PHE LYS PHE HIS VAL LYS ALA PRO ILE PHE VAL ALA ARG SEQRES 7 C 270 GLN TRP PHE ARG HIS ARG THR ALA SER VAL ASN GLU ILE SEQRES 8 C 270 SER GLY ARG TYR SER ILE LEU LYS GLU GLU PHE TYR GLU SEQRES 9 C 270 PRO GLU ALA PHE ARG LYS GLN ALA LYS ARG ASN LYS GLN SEQRES 10 C 270 ALA SER GLU GLY ALA LEU LEU ASP GLU GLU ALA LEU ALA SEQRES 11 C 270 LEU LEU ARG LYS VAL GLN GLN GLU ALA TYR GLY ALA TYR SEQRES 12 C 270 ARG ALA LEU LEU GLU LYS GLY VAL ALA ARG GLU MET ALA SEQRES 13 C 270 ARG MET VAL LEU PRO LEU ASN LEU TYR THR GLU PHE TYR SEQRES 14 C 270 TRP LYS GLN ASP LEU HIS ASN LEU PHE HIS PHE LEU LYS SEQRES 15 C 270 LEU ARG LEU ALA PRO GLU ALA GLN TRP GLU ILE ARG GLN SEQRES 16 C 270 TYR ALA ARG ALA ILE ALA GLU ILE VAL LYS GLU ARG VAL SEQRES 17 C 270 PRO LEU ALA TRP ALA ALA PHE GLU GLU HIS LEU LEU GLU SEQRES 18 C 270 GLY ALA PHE LEU SER ARG THR GLU LEU ARG ALA LEU ARG SEQRES 19 C 270 GLY LEU LEU THR PRO GLU VAL TYR GLU LYS ALA LEU SER SEQRES 20 C 270 SER LEU GLY LEU GLY GLY SER ARG LEU LYS GLU ALA LEU SEQRES 21 C 270 GLU LYS VAL PHE GLY PRO GLY GLU ALA LEU SEQRES 1 D 270 MET GLU GLY PRO LEU THR ILE PRO VAL LEU ASP LYS GLY SEQRES 2 D 270 PHE VAL ARG LEU VAL ASP GLN MET GLY ASP ASP ARG ALA SEQRES 3 D 270 ILE VAL GLN ALA ALA ARG VAL SER TYR GLY GLU GLY THR SEQRES 4 D 270 LYS THR VAL ARG GLU ASP ALA ALA LEU ILE ASP TYR LEU SEQRES 5 D 270 MET ARG HIS ARG HIS THR SER PRO PHE GLU MET VAL VAL SEQRES 6 D 270 PHE LYS PHE HIS VAL LYS ALA PRO ILE PHE VAL ALA ARG SEQRES 7 D 270 GLN TRP PHE ARG HIS ARG THR ALA SER VAL ASN GLU ILE SEQRES 8 D 270 SER GLY ARG TYR SER ILE LEU LYS GLU GLU PHE TYR GLU SEQRES 9 D 270 PRO GLU ALA PHE ARG LYS GLN ALA LYS ARG ASN LYS GLN SEQRES 10 D 270 ALA SER GLU GLY ALA LEU LEU ASP GLU GLU ALA LEU ALA SEQRES 11 D 270 LEU LEU ARG LYS VAL GLN GLN GLU ALA TYR GLY ALA TYR SEQRES 12 D 270 ARG ALA LEU LEU GLU LYS GLY VAL ALA ARG GLU MET ALA SEQRES 13 D 270 ARG MET VAL LEU PRO LEU ASN LEU TYR THR GLU PHE TYR SEQRES 14 D 270 TRP LYS GLN ASP LEU HIS ASN LEU PHE HIS PHE LEU LYS SEQRES 15 D 270 LEU ARG LEU ALA PRO GLU ALA GLN TRP GLU ILE ARG GLN SEQRES 16 D 270 TYR ALA ARG ALA ILE ALA GLU ILE VAL LYS GLU ARG VAL SEQRES 17 D 270 PRO LEU ALA TRP ALA ALA PHE GLU GLU HIS LEU LEU GLU SEQRES 18 D 270 GLY ALA PHE LEU SER ARG THR GLU LEU ARG ALA LEU ARG SEQRES 19 D 270 GLY LEU LEU THR PRO GLU VAL TYR GLU LYS ALA LEU SER SEQRES 20 D 270 SER LEU GLY LEU GLY GLY SER ARG LEU LYS GLU ALA LEU SEQRES 21 D 270 GLU LYS VAL PHE GLY PRO GLY GLU ALA LEU HET FAD A 301 53 HET PO4 A 302 5 HET PO4 A 303 5 HET PO4 B 302 5 HET PO4 B 303 5 HET FAD B 301 53 HET FAD C 301 53 HET PO4 C 303 5 HET PO4 C 302 5 HET FAD D 301 53 HET PO4 D 303 5 HET PO4 D 302 5 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM PO4 PHOSPHATE ION FORMUL 5 FAD 4(C27 H33 N9 O15 P2) FORMUL 6 PO4 8(O4 P 3-) FORMUL 17 HOH *72(H2 O) HELIX 1 AA1 ASP A 23 VAL A 33 1 11 HELIX 2 AA2 THR A 41 HIS A 55 1 15 HELIX 3 AA3 THR A 58 MET A 63 5 6 HELIX 4 AA4 ILE A 74 PHE A 81 1 8 HELIX 5 AA5 LEU A 132 LYS A 149 1 18 HELIX 6 AA6 ALA A 152 ARG A 157 1 6 HELIX 7 AA7 MET A 158 LEU A 160 5 3 HELIX 8 AA8 LEU A 174 LEU A 185 1 12 HELIX 9 AA9 GLN A 190 VAL A 208 1 19 HELIX 10 AB1 VAL A 208 LEU A 219 1 12 HELIX 11 AB2 SER A 226 LEU A 237 1 12 HELIX 12 AB3 THR A 238 LEU A 249 1 12 HELIX 13 AB4 GLY A 252 PHE A 264 1 13 HELIX 14 AB5 ASP B 23 VAL B 33 1 11 HELIX 15 AB6 THR B 41 HIS B 55 1 15 HELIX 16 AB7 THR B 58 MET B 63 1 6 HELIX 17 AB8 ILE B 74 PHE B 81 1 8 HELIX 18 AB9 LEU B 132 LYS B 149 1 18 HELIX 19 AC1 ALA B 152 ARG B 157 1 6 HELIX 20 AC2 MET B 158 LEU B 160 5 3 HELIX 21 AC3 LEU B 174 ALA B 186 1 13 HELIX 22 AC4 GLN B 190 VAL B 208 1 19 HELIX 23 AC5 VAL B 208 LEU B 219 1 12 HELIX 24 AC6 SER B 226 LEU B 237 1 12 HELIX 25 AC7 THR B 238 SER B 248 1 11 HELIX 26 AC8 GLY B 253 LYS B 262 1 10 HELIX 27 AC9 ASP C 23 ARG C 32 1 10 HELIX 28 AD1 THR C 41 HIS C 55 1 15 HELIX 29 AD2 SER C 59 MET C 63 5 5 HELIX 30 AD3 ILE C 74 PHE C 81 1 8 HELIX 31 AD4 LEU C 132 LYS C 149 1 18 HELIX 32 AD5 ALA C 152 ARG C 157 1 6 HELIX 33 AD6 MET C 158 LEU C 160 5 3 HELIX 34 AD7 LEU C 174 LEU C 185 1 12 HELIX 35 AD8 GLN C 190 VAL C 208 1 19 HELIX 36 AD9 VAL C 208 LEU C 219 1 12 HELIX 37 AE1 SER C 226 ARG C 234 1 9 HELIX 38 AE2 THR C 238 SER C 248 1 11 HELIX 39 AE3 GLY C 252 PHE C 264 1 13 HELIX 40 AE4 ASP D 23 VAL D 33 1 11 HELIX 41 AE5 THR D 41 HIS D 55 1 15 HELIX 42 AE6 SER D 59 MET D 63 5 5 HELIX 43 AE7 ILE D 74 PHE D 81 1 8 HELIX 44 AE8 LEU D 132 LYS D 149 1 18 HELIX 45 AE9 ALA D 152 ARG D 157 1 6 HELIX 46 AF1 MET D 158 LEU D 160 5 3 HELIX 47 AF2 LEU D 174 ALA D 186 1 13 HELIX 48 AF3 GLN D 190 VAL D 208 1 19 HELIX 49 AF4 VAL D 208 LEU D 219 1 12 HELIX 50 AF5 SER D 226 LEU D 237 1 12 HELIX 51 AF6 THR D 238 LEU D 249 1 12 HELIX 52 AF7 GLY D 253 LYS D 262 1 10 SHEET 1 AA1 5 THR A 6 VAL A 9 0 SHEET 2 AA1 5 GLY A 13 MET A 21 -1 O VAL A 15 N ILE A 7 SHEET 3 AA1 5 VAL A 65 PRO A 73 -1 O LYS A 67 N VAL A 18 SHEET 4 AA1 5 TYR A 165 ASP A 173 -1 O TRP A 170 N PHE A 68 SHEET 5 AA1 5 SER A 87 GLU A 90 -1 N SER A 87 O LYS A 171 SHEET 1 AA2 2 ALA A 223 LEU A 225 0 SHEET 2 AA2 2 ALA D 223 LEU D 225 -1 O ALA D 223 N LEU A 225 SHEET 1 AA3 5 THR B 6 VAL B 9 0 SHEET 2 AA3 5 GLY B 13 MET B 21 -1 O VAL B 15 N ILE B 7 SHEET 3 AA3 5 VAL B 65 PRO B 73 -1 O HIS B 69 N ARG B 16 SHEET 4 AA3 5 TYR B 165 ASP B 173 -1 O PHE B 168 N VAL B 70 SHEET 5 AA3 5 SER B 87 GLU B 90 -1 N SER B 87 O LYS B 171 SHEET 1 AA4 2 ALA B 223 LEU B 225 0 SHEET 2 AA4 2 ALA C 223 LEU C 225 -1 O LEU C 225 N ALA B 223 SHEET 1 AA5 5 THR C 6 VAL C 9 0 SHEET 2 AA5 5 GLY C 13 MET C 21 -1 O VAL C 15 N ILE C 7 SHEET 3 AA5 5 VAL C 65 PRO C 73 -1 O LYS C 67 N VAL C 18 SHEET 4 AA5 5 TYR C 165 ASP C 173 -1 O THR C 166 N ALA C 72 SHEET 5 AA5 5 SER C 87 GLU C 90 -1 N ASN C 89 O TYR C 169 SHEET 1 AA6 5 THR D 6 VAL D 9 0 SHEET 2 AA6 5 GLY D 13 MET D 21 -1 O VAL D 15 N ILE D 7 SHEET 3 AA6 5 VAL D 65 PRO D 73 -1 O LYS D 67 N VAL D 18 SHEET 4 AA6 5 TYR D 165 ASP D 173 -1 O PHE D 168 N VAL D 70 SHEET 5 AA6 5 SER D 87 GLU D 90 -1 N SER D 87 O LYS D 171 SITE 1 AC1 21 HIS A 55 HIS A 57 SER A 59 GLU A 62 SITE 2 AC1 21 ASP A 173 HIS A 175 ASN A 176 HOH A 404 SITE 3 AC1 21 HOH A 409 ARG B 84 THR B 85 ALA B 86 SITE 4 AC1 21 ASN B 89 GLU B 90 ARG D 82 HIS D 83 SITE 5 AC1 21 ARG D 84 THR D 85 HIS D 179 FAD D 301 SITE 6 AC1 21 PO4 D 302 SITE 1 AC2 5 GLN A 79 ARG A 82 ARG A 184 PO4 C 303 SITE 2 AC2 5 FAD D 301 SITE 1 AC3 9 SER A 92 GLY A 93 ARG A 94 ARG A 157 SITE 2 AC3 9 HOH A 407 ARG C 78 GLN C 79 ARG C 82 SITE 3 AC3 9 PO4 C 302 SITE 1 AC4 5 GLN B 79 ARG B 82 ARG B 184 FAD C 301 SITE 2 AC4 5 PO4 D 303 SITE 1 AC5 7 SER B 92 GLY B 93 ARG B 94 ARG B 157 SITE 2 AC5 7 GLN D 79 ARG D 82 PO4 D 302 SITE 1 AC6 17 ARG A 84 THR A 85 ALA A 86 ASN A 89 SITE 2 AC6 17 GLU A 90 HIS B 55 HIS B 57 SER B 59 SITE 3 AC6 17 HIS B 175 ASN B 176 ARG C 82 HIS C 83 SITE 4 AC6 17 ARG C 84 THR C 85 HIS C 179 FAD C 301 SITE 5 AC6 17 PO4 C 302 SITE 1 AC7 20 ARG B 82 HIS B 83 ARG B 84 THR B 85 SITE 2 AC7 20 HIS B 179 LEU B 183 FAD B 301 PO4 B 302 SITE 3 AC7 20 HIS C 55 HIS C 57 SER C 59 THR C 85 SITE 4 AC7 20 ASP C 173 HIS C 175 ASN C 176 ARG D 84 SITE 5 AC7 20 THR D 85 ALA D 86 ASN D 89 GLU D 90 SITE 1 AC8 7 GLN A 79 ARG A 82 PO4 A 302 SER C 92 SITE 2 AC8 7 GLY C 93 ARG C 94 ARG C 157 SITE 1 AC9 5 PO4 A 303 FAD B 301 GLN C 79 ARG C 82 SITE 2 AC9 5 ARG C 184 SITE 1 AD1 21 ARG A 82 HIS A 83 ARG A 84 THR A 85 SITE 2 AD1 21 HIS A 179 FAD A 301 PO4 A 302 ARG C 84 SITE 3 AD1 21 THR C 85 ALA C 86 ASN C 89 GLU C 90 SITE 4 AD1 21 SER C 92 TYR C 95 HIS D 57 SER D 59 SITE 5 AD1 21 HIS D 175 ASN D 176 HOH D 402 HOH D 405 SITE 6 AD1 21 HOH D 410 SITE 1 AD2 7 GLN B 79 ARG B 82 PO4 B 302 SER D 92 SITE 2 AD2 7 GLY D 93 ARG D 94 ARG D 157 SITE 1 AD3 5 FAD A 301 PO4 B 303 GLN D 79 ARG D 82 SITE 2 AD3 5 ARG D 184 CRYST1 144.027 68.362 134.083 90.00 115.12 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006943 0.000000 0.003255 0.00000 SCALE2 0.000000 0.014628 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008237 0.00000