HEADER LIPID BINDING PROTEIN 16-JAN-19 6J6X TITLE CRYSTAL STRUCTURE OF APO GGTASEIII COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN PRENYLTRANSFERASE ALPHA SUBUNIT REPEAT-CONTAINING COMPND 3 PROTEIN 1; COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: GERANYLGERANYL TRANSFERASE TYPE-2 SUBUNIT BETA; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: GERANYLGERANYL TRANSFERASE TYPE II SUBUNIT BETA,GGTASE-II- COMPND 10 BETA,RAB GERANYL-GERANYLTRANSFERASE SUBUNIT BETA,RAB GGTASE BETA,RAB COMPND 11 GERANYLGERANYLTRANSFERASE SUBUNIT BETA,TYPE II PROTEIN GERANYL- COMPND 12 GERANYLTRANSFERASE SUBUNIT BETA; COMPND 13 EC: 2.5.1.60; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PTAR1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: RABGGTB, GGTB; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LIPID TRANSFERASE, LIPID BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.GOTO-ITO,A.YAMAGATA,Y.SATO,S.FUKAI REVDAT 2 22-NOV-23 6J6X 1 REMARK REVDAT 1 22-JAN-20 6J6X 0 JRNL AUTH S.GOTO-ITO,R.SHIRAKAWA,S.FUKAI JRNL TITL CRYSTAL STRUCTURE OF APO GGTASEIII JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.96 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.96 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.48 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.410 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 32986 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.267 REMARK 3 R VALUE (WORKING SET) : 0.266 REMARK 3 FREE R VALUE : 0.298 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.740 REMARK 3 FREE R VALUE TEST SET COUNT : 1565 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.4815 - 6.5826 0.99 3199 150 0.2278 0.2785 REMARK 3 2 6.5826 - 5.2267 1.00 2927 159 0.2924 0.3415 REMARK 3 3 5.2267 - 4.5665 1.00 2906 147 0.2597 0.2879 REMARK 3 4 4.5665 - 4.1492 1.00 2838 151 0.2536 0.2697 REMARK 3 5 4.1492 - 3.8520 1.00 2832 128 0.2709 0.2637 REMARK 3 6 3.8520 - 3.6249 1.00 2845 141 0.2807 0.2936 REMARK 3 7 3.6249 - 3.4434 1.00 2797 127 0.2776 0.2948 REMARK 3 8 3.4434 - 3.2936 1.00 2779 142 0.2891 0.3019 REMARK 3 9 3.2936 - 3.1668 1.00 2767 132 0.3153 0.3452 REMARK 3 10 3.1668 - 3.0575 1.00 2799 135 0.3291 0.3477 REMARK 3 11 3.0575 - 2.9619 1.00 2732 153 0.3430 0.3817 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.430 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.370 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 4792 REMARK 3 ANGLE : 0.517 6499 REMARK 3 CHIRALITY : 0.020 719 REMARK 3 PLANARITY : 0.002 817 REMARK 3 DIHEDRAL : 10.334 1739 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6J6X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1300010434. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.044 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33185 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.960 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 69.80 REMARK 200 R MERGE (I) : 0.20400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.96 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.01 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 59.50 REMARK 200 R MERGE FOR SHELL (I) : 1.84800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3DSS, 1DCE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 77.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.04M MGCL2, 0.05M NACACODYLATE PH 6, REMARK 280 5% MPD, 8MM CHAPS, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 431.72067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 215.86033 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 323.79050 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 107.93017 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 539.65083 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 431.72067 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 215.86033 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 107.93017 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 323.79050 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 539.65083 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 153 REMARK 465 THR A 154 REMARK 465 SER A 155 REMARK 465 LEU A 156 REMARK 465 PRO A 157 REMARK 465 SER A 158 REMARK 465 PHE A 159 REMARK 465 VAL A 160 REMARK 465 THR A 161 REMARK 465 LYS A 162 REMARK 465 GLY A 163 REMARK 465 ASN A 164 REMARK 465 LEU A 165 REMARK 465 GLY A 166 REMARK 465 THR A 167 REMARK 465 ILE A 168 REMARK 465 ILE A 253 REMARK 465 ASP A 254 REMARK 465 SER A 255 REMARK 465 SER A 256 REMARK 465 VAL A 257 REMARK 465 MET A 258 REMARK 465 GLU A 259 REMARK 465 GLN A 260 REMARK 465 ASN A 261 REMARK 465 PRO A 262 REMARK 465 LEU A 263 REMARK 465 ARG A 264 REMARK 465 SER A 265 REMARK 465 GLU A 266 REMARK 465 PRO A 267 REMARK 465 ALA A 268 REMARK 465 LEU A 269 REMARK 465 VAL A 270 REMARK 465 PRO A 271 REMARK 465 PRO A 272 REMARK 465 LYS A 273 REMARK 465 ASP A 274 REMARK 465 GLU A 275 REMARK 465 GLU A 276 REMARK 465 ALA A 277 REMARK 465 ALA A 278 REMARK 465 VAL A 279 REMARK 465 SER A 280 REMARK 465 THR A 281 REMARK 465 GLU A 282 REMARK 465 GLU A 283 REMARK 465 PRO A 284 REMARK 465 GLY A 328 REMARK 465 ARG A 329 REMARK 465 PHE A 330 REMARK 465 PRO A 331 REMARK 465 HIS A 332 REMARK 465 SER A 333 REMARK 465 MET A 334 REMARK 465 THR A 335 REMARK 465 GLN A 336 REMARK 465 LEU A 337 REMARK 465 SER A 338 REMARK 465 PRO A 339 REMARK 465 ALA A 340 REMARK 465 ASP A 341 REMARK 465 SER A 342 REMARK 465 PRO A 343 REMARK 465 GLY A 344 REMARK 465 GLY A 345 REMARK 465 THR A 346 REMARK 465 LEU A 347 REMARK 465 SER A 348 REMARK 465 ASP A 349 REMARK 465 LEU A 350 REMARK 465 HIS A 351 REMARK 465 LEU A 352 REMARK 465 ILE A 353 REMARK 465 PRO A 354 REMARK 465 ALA A 355 REMARK 465 GLY A 356 REMARK 465 SER A 357 REMARK 465 GLN A 358 REMARK 465 LEU A 359 REMARK 465 SER A 360 REMARK 465 GLN A 361 REMARK 465 ALA A 362 REMARK 465 MET A 363 REMARK 465 GLU A 364 REMARK 465 VAL A 365 REMARK 465 ASP A 366 REMARK 465 GLY B -4 REMARK 465 PRO B -3 REMARK 465 LEU B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 THR B 3 REMARK 465 PRO B 4 REMARK 465 GLN B 5 REMARK 465 LYS B 6 REMARK 465 ASP B 7 REMARK 465 VAL B 8 REMARK 465 ILE B 9 REMARK 465 ILE B 10 REMARK 465 LYS B 11 REMARK 465 SER B 12 REMARK 465 ASP B 13 REMARK 465 ALA B 14 REMARK 465 PRO B 225 REMARK 465 SER B 226 REMARK 465 GLY B 227 REMARK 465 GLY B 228 REMARK 465 LEU B 229 REMARK 465 ASN B 230 REMARK 465 GLY B 231 REMARK 465 ARG B 232 REMARK 465 PRO B 233 REMARK 465 GLU B 234 REMARK 465 LYS B 235 REMARK 465 LEU B 236 REMARK 465 VAL B 325 REMARK 465 GLN B 326 REMARK 465 PRO B 327 REMARK 465 GLU B 328 REMARK 465 LEU B 329 REMARK 465 VAL B 330 REMARK 465 SER B 331 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU B 224 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 136 108.58 -49.97 REMARK 500 SER B 110 75.99 -156.22 REMARK 500 ARG B 254 58.53 -101.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD B 402 DBREF 6J6X A 1 366 UNP Q7Z6K3 PTAR1_HUMAN 1 339 DBREF 6J6X B 1 331 UNP P53611 PGTB2_HUMAN 1 331 SEQADV 6J6X GLY A 328 UNP Q7Z6K3 INSERTION SEQADV 6J6X ARG A 329 UNP Q7Z6K3 INSERTION SEQADV 6J6X PHE A 330 UNP Q7Z6K3 INSERTION SEQADV 6J6X PRO A 331 UNP Q7Z6K3 INSERTION SEQADV 6J6X HIS A 332 UNP Q7Z6K3 INSERTION SEQADV 6J6X SER A 333 UNP Q7Z6K3 INSERTION SEQADV 6J6X MET A 334 UNP Q7Z6K3 INSERTION SEQADV 6J6X THR A 335 UNP Q7Z6K3 INSERTION SEQADV 6J6X GLN A 336 UNP Q7Z6K3 INSERTION SEQADV 6J6X LEU A 337 UNP Q7Z6K3 INSERTION SEQADV 6J6X SER A 338 UNP Q7Z6K3 INSERTION SEQADV 6J6X PRO A 339 UNP Q7Z6K3 INSERTION SEQADV 6J6X ALA A 340 UNP Q7Z6K3 INSERTION SEQADV 6J6X ASP A 341 UNP Q7Z6K3 INSERTION SEQADV 6J6X SER A 342 UNP Q7Z6K3 INSERTION SEQADV 6J6X PRO A 343 UNP Q7Z6K3 INSERTION SEQADV 6J6X GLY A 344 UNP Q7Z6K3 INSERTION SEQADV 6J6X GLY A 345 UNP Q7Z6K3 INSERTION SEQADV 6J6X THR A 346 UNP Q7Z6K3 INSERTION SEQADV 6J6X LEU A 347 UNP Q7Z6K3 INSERTION SEQADV 6J6X SER A 348 UNP Q7Z6K3 INSERTION SEQADV 6J6X ASP A 349 UNP Q7Z6K3 INSERTION SEQADV 6J6X LEU A 350 UNP Q7Z6K3 INSERTION SEQADV 6J6X HIS A 351 UNP Q7Z6K3 INSERTION SEQADV 6J6X LEU A 352 UNP Q7Z6K3 INSERTION SEQADV 6J6X ILE A 353 UNP Q7Z6K3 INSERTION SEQADV 6J6X PRO A 354 UNP Q7Z6K3 INSERTION SEQADV 6J6X GLY B -4 UNP P53611 EXPRESSION TAG SEQADV 6J6X PRO B -3 UNP P53611 EXPRESSION TAG SEQADV 6J6X LEU B -2 UNP P53611 EXPRESSION TAG SEQADV 6J6X GLY B -1 UNP P53611 EXPRESSION TAG SEQADV 6J6X SER B 0 UNP P53611 EXPRESSION TAG SEQRES 1 A 366 MET ALA GLU THR SER GLU GLU VAL ALA VAL LEU VAL GLN SEQRES 2 A 366 ARG VAL VAL LYS ASP ILE THR ASN ALA PHE ARG ARG ASN SEQRES 3 A 366 PRO HIS ILE ASP GLU ILE GLY LEU ILE PRO CYS PRO GLU SEQRES 4 A 366 ALA ARG TYR ASN ARG SER PRO ILE VAL LEU VAL GLU ASN SEQRES 5 A 366 LYS LEU GLY VAL GLU SER TRP CAS VAL LYS PHE LEU LEU SEQRES 6 A 366 PRO TYR VAL HIS ASN LYS LEU LEU LEU TYR ARG THR ARG SEQRES 7 A 366 LYS GLN TRP LEU ASN ARG ASP GLU LEU ILE ASP VAL THR SEQRES 8 A 366 CAS THR LEU LEU LEU LEU ASN PRO ASP PHE THR THR ALA SEQRES 9 A 366 TRP ASN VAL ARG LYS GLU LEU ILE LEU SER GLY THR LEU SEQRES 10 A 366 ASN PRO ILE LYS ASP LEU HIS LEU GLY LYS LEU ALA LEU SEQRES 11 A 366 THR LYS PHE PRO LYS SER PRO GLU THR TRP ILE HIS ARG SEQRES 12 A 366 ARG TRP VAL LEU GLN GLN LEU ILE GLN GLU THR SER LEU SEQRES 13 A 366 PRO SER PHE VAL THR LYS GLY ASN LEU GLY THR ILE PRO SEQRES 14 A 366 THR GLU ARG ALA GLN ARG LEU ILE GLN GLU GLU MET GLU SEQRES 15 A 366 VAL CYS GLY GLU ALA ALA GLY ARG TYR PRO SER ASN TYR SEQRES 16 A 366 ASN ALA TRP SER HIS ARG ILE TRP VAL LEU GLN HIS LEU SEQRES 17 A 366 ALA LYS LEU ASP VAL LYS ILE LEU LEU ASP GLU LEU SER SEQRES 18 A 366 SER THR LYS HIS TRP ALA SER MET HIS VAL SER ASP HIS SEQRES 19 A 366 SER GLY PHE HIS TYR ARG GLN PHE LEU LEU LYS SER LEU SEQRES 20 A 366 ILE SER GLN THR VAL ILE ASP SER SER VAL MET GLU GLN SEQRES 21 A 366 ASN PRO LEU ARG SER GLU PRO ALA LEU VAL PRO PRO LYS SEQRES 22 A 366 ASP GLU GLU ALA ALA VAL SER THR GLU GLU PRO ARG ILE SEQRES 23 A 366 ASN LEU PRO HIS LEU LEU GLU GLU GLU VAL GLU PHE SER SEQRES 24 A 366 THR ASP LEU ILE ASP SER TYR PRO GLY HIS GLU THR LEU SEQRES 25 A 366 TRP CYS HIS ARG ARG HIS ILE PHE TYR LEU GLN HIS HIS SEQRES 26 A 366 LEU ASN GLY ARG PHE PRO HIS SER MET THR GLN LEU SER SEQRES 27 A 366 PRO ALA ASP SER PRO GLY GLY THR LEU SER ASP LEU HIS SEQRES 28 A 366 LEU ILE PRO ALA GLY SER GLN LEU SER GLN ALA MET GLU SEQRES 29 A 366 VAL ASP SEQRES 1 B 336 GLY PRO LEU GLY SER MET GLY THR PRO GLN LYS ASP VAL SEQRES 2 B 336 ILE ILE LYS SER ASP ALA PRO ASP THR LEU LEU LEU GLU SEQRES 3 B 336 LYS HIS ALA ASP TYR ILE ALA SER TYR GLY SER LYS LYS SEQRES 4 B 336 ASP ASP TYR GLU TYR CYS MET SER GLU TYR LEU ARG MET SEQRES 5 B 336 SER GLY ILE TYR TRP GLY LEU THR VAL MET ASP LEU MET SEQRES 6 B 336 GLY GLN LEU HIS ARG MET ASN ARG GLU GLU ILE LEU ALA SEQRES 7 B 336 PHE ILE LYS SER CYS GLN HIS GLU CYS GLY GLY ILE SER SEQRES 8 B 336 ALA SER ILE GLY HIS ASP PRO HIS LEU LEU TYR THR LEU SEQRES 9 B 336 SER ALA VAL GLN ILE LEU THR LEU TYR ASP SER ILE ASN SEQRES 10 B 336 VAL ILE ASP VAL ASN LYS VAL VAL GLU TYR VAL LYS GLY SEQRES 11 B 336 LEU GLN LYS GLU ASP GLY SER PHE ALA GLY ASP ILE TRP SEQRES 12 B 336 GLY GLU ILE ASP THR ARG PHE SER PHE CYS ALA VAL ALA SEQRES 13 B 336 THR LEU ALA LEU LEU GLY LYS LEU ASP ALA ILE ASN VAL SEQRES 14 B 336 GLU LYS ALA ILE GLU PHE VAL LEU SER CYS MET ASN PHE SEQRES 15 B 336 ASP GLY GLY PHE GLY CYS ARG PRO GLY SER GLU SER HIS SEQRES 16 B 336 ALA GLY GLN ILE TYR CYS CYS THR GLY PHE LEU ALA ILE SEQRES 17 B 336 THR SER GLN LEU HIS GLN VAL ASN SER ASP LEU LEU GLY SEQRES 18 B 336 TRP TRP LEU CYS GLU ARG GLN LEU PRO SER GLY GLY LEU SEQRES 19 B 336 ASN GLY ARG PRO GLU LYS LEU PRO ASP VAL CYS TYR SER SEQRES 20 B 336 TRP TRP VAL LEU ALA SER LEU LYS ILE ILE GLY ARG LEU SEQRES 21 B 336 HIS TRP ILE ASP ARG GLU LYS LEU ARG ASN PHE ILE LEU SEQRES 22 B 336 ALA CYS GLN ASP GLU GLU THR GLY GLY PHE ALA ASP ARG SEQRES 23 B 336 PRO GLY ASP MET VAL ASP PRO PHE HIS THR LEU PHE GLY SEQRES 24 B 336 ILE ALA GLY LEU SER LEU LEU GLY GLU GLU GLN ILE LYS SEQRES 25 B 336 PRO VAL ASN PRO VAL PHE CYS MET PRO GLU GLU VAL LEU SEQRES 26 B 336 GLN ARG VAL ASN VAL GLN PRO GLU LEU VAL SER MODRES 6J6X CAS A 60 CYS MODIFIED RESIDUE MODRES 6J6X CAS A 92 CYS MODIFIED RESIDUE HET CAS A 60 9 HET CAS A 92 9 HET MPD A 401 8 HET MG B 401 1 HET MPD B 402 8 HETNAM CAS S-(DIMETHYLARSENIC)CYSTEINE HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM MG MAGNESIUM ION FORMUL 1 CAS 2(C5 H12 AS N O2 S) FORMUL 3 MPD 2(C6 H14 O2) FORMUL 4 MG MG 2+ HELIX 1 AA1 GLU A 3 ASN A 26 1 24 HELIX 2 AA2 GLU A 57 THR A 77 1 21 HELIX 3 AA3 ASN A 83 LEU A 96 1 14 HELIX 4 AA4 PHE A 101 LEU A 113 1 13 HELIX 5 AA5 ASN A 118 THR A 131 1 14 HELIX 6 AA6 SER A 136 ILE A 151 1 16 HELIX 7 AA7 THR A 170 ALA A 187 1 18 HELIX 8 AA8 ASN A 194 LEU A 208 1 15 HELIX 9 AA9 ASP A 212 THR A 223 1 12 HELIX 10 AB1 THR A 223 HIS A 230 1 8 HELIX 11 AB2 ASP A 233 GLN A 250 1 18 HELIX 12 AB3 ASN A 287 TYR A 306 1 20 HELIX 13 AB4 HIS A 309 LEU A 326 1 18 HELIX 14 AB5 LEU B 20 SER B 29 1 10 HELIX 15 AB6 TYR B 37 SER B 42 1 6 HELIX 16 AB7 LEU B 45 MET B 60 1 16 HELIX 17 AB8 GLN B 62 MET B 66 5 5 HELIX 18 AB9 ASN B 67 SER B 77 1 11 HELIX 19 AC1 LEU B 95 TYR B 108 1 14 HELIX 20 AC2 SER B 110 ILE B 114 5 5 HELIX 21 AC3 ASP B 115 GLY B 125 1 11 HELIX 22 AC4 ASP B 142 GLY B 157 1 16 HELIX 23 AC5 LYS B 158 ILE B 162 5 5 HELIX 24 AC6 ASN B 163 SER B 173 1 11 HELIX 25 AC7 HIS B 190 THR B 204 1 15 HELIX 26 AC8 GLN B 206 VAL B 210 5 5 HELIX 27 AC9 ASN B 211 ARG B 222 1 12 HELIX 28 AD1 ASP B 238 GLY B 253 1 16 HELIX 29 AD2 ASP B 259 CYS B 270 1 12 HELIX 30 AD3 ASP B 287 GLY B 302 1 16 SHEET 1 AA1 3 GLU A 31 GLY A 33 0 SHEET 2 AA1 3 LYS A 53 VAL A 56 1 O LEU A 54 N GLY A 33 SHEET 3 AA1 3 ILE A 47 LEU A 49 -1 N VAL A 48 O GLY A 55 LINK C TRP A 59 N CAS A 60 1555 1555 1.33 LINK C CAS A 60 N VAL A 61 1555 1555 1.33 LINK C THR A 91 N CAS A 92 1555 1555 1.33 LINK C CAS A 92 N THR A 93 1555 1555 1.33 SITE 1 AC1 1 GLU A 7 SITE 1 AC2 3 ASP B 109 GLU B 318 VAL B 319 SITE 1 AC3 1 ARG B 46 CRYST1 88.540 88.540 647.581 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011294 0.006521 0.000000 0.00000 SCALE2 0.000000 0.013042 0.000000 0.00000 SCALE3 0.000000 0.000000 0.001544 0.00000