HEADER TOXIN 18-JAN-19 6J7T TITLE CRYSTAL STRUCTURE OF TOXIN TGLT (UNUSUAL TYPE GUANYLYLTRANSFERASE-LIKE TITLE 2 TOXIN, RV1045) MUTANT D82A FROM MYCOBACTERIUM TUBERCULOSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: GUANYLYLTRANSFERASE-LIKE TOXIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS (STRAIN ATCC 25618 / SOURCE 3 H37RV); SOURCE 4 ORGANISM_TAXID: 83332; SOURCE 5 STRAIN: ATCC 25618 / H37RV; SOURCE 6 GENE: RV1045; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS GUANYLYLTRANSFERASE;GUANYLYLTRANSFERASE-LIKE TOXIN;TA, TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR X.YU,X.GAO,K.ZHU,J.A.WOJDYLA,M.WANG,S.CUI REVDAT 2 20-MAY-20 6J7T 1 JRNL REVDAT 1 13-MAY-20 6J7T 0 JRNL AUTH X.YU,X.GAO,K.ZHU,H.YIN,X.MAO,J.A.WOJDYLA,B.QIN,H.HUANG, JRNL AUTH 2 M.WANG,Y.C.SUN,S.CUI JRNL TITL CHARACTERIZATION OF A TOXIN-ANTITOXIN SYSTEM IN JRNL TITL 2 MYCOBACTERIUM TUBERCULOSIS SUGGESTS NEUTRALIZATION BY JRNL TITL 3 PHOSPHORYLATION AS THE ANTITOXICITY MECHANISM. JRNL REF COMMUN BIOL V. 3 216 2020 JRNL REFN ESSN 2399-3642 JRNL PMID 32382148 JRNL DOI 10.1038/S42003-020-0941-1 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.37 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 48568 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.680 REMARK 3 FREE R VALUE TEST SET COUNT : 3732 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.3894 - 5.7064 0.98 1648 133 0.1943 0.2016 REMARK 3 2 5.7064 - 4.5303 1.00 1658 139 0.1565 0.1666 REMARK 3 3 4.5303 - 3.9579 1.00 1681 138 0.1497 0.1368 REMARK 3 4 3.9579 - 3.5962 1.00 1663 132 0.1589 0.1843 REMARK 3 5 3.5962 - 3.3385 1.00 1664 131 0.1585 0.2220 REMARK 3 6 3.3385 - 3.1417 1.00 1664 142 0.1640 0.1950 REMARK 3 7 3.1417 - 2.9844 1.00 1649 140 0.1661 0.1530 REMARK 3 8 2.9844 - 2.8545 1.00 1670 142 0.1763 0.2122 REMARK 3 9 2.8545 - 2.7446 1.00 1667 138 0.1689 0.2130 REMARK 3 10 2.7446 - 2.6499 1.00 1667 134 0.1700 0.1835 REMARK 3 11 2.6499 - 2.5670 1.00 1648 136 0.1779 0.1651 REMARK 3 12 2.5670 - 2.4937 1.00 1683 144 0.1745 0.1973 REMARK 3 13 2.4937 - 2.4280 1.00 1639 138 0.1771 0.2015 REMARK 3 14 2.4280 - 2.3688 1.00 1631 140 0.1855 0.1965 REMARK 3 15 2.3688 - 2.3149 1.00 1699 138 0.1976 0.2162 REMARK 3 16 2.3149 - 2.2657 1.00 1660 140 0.1994 0.2392 REMARK 3 17 2.2657 - 2.2203 1.00 1662 142 0.2804 0.3118 REMARK 3 18 2.2203 - 2.1784 1.00 1705 146 0.2093 0.2480 REMARK 3 19 2.1784 - 2.1395 1.00 1595 140 0.2096 0.2298 REMARK 3 20 2.1395 - 2.1033 1.00 1678 136 0.2153 0.2279 REMARK 3 21 2.1033 - 2.0693 1.00 1701 128 0.2624 0.2888 REMARK 3 22 2.0693 - 2.0375 1.00 1677 142 0.2874 0.3054 REMARK 3 23 2.0375 - 2.0075 1.00 1630 140 0.2453 0.2429 REMARK 3 24 2.0075 - 1.9793 1.00 1664 140 0.2586 0.2654 REMARK 3 25 1.9793 - 1.9525 1.00 1649 138 0.3060 0.2896 REMARK 3 26 1.9525 - 1.9271 1.00 1640 138 0.3302 0.3918 REMARK 3 27 1.9271 - 1.9031 0.97 1644 137 0.4065 0.4211 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.800 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.76 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 2308 REMARK 3 ANGLE : 0.706 3159 REMARK 3 CHIRALITY : 0.042 370 REMARK 3 PLANARITY : 0.005 416 REMARK 3 DIHEDRAL : 11.895 1420 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6J7T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1300010483. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9779 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50528 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.860 REMARK 200 RESOLUTION RANGE LOW (A) : 49.373 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 18.67 REMARK 200 R MERGE (I) : 0.17600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.9400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.86 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.4 REMARK 200 DATA REDUNDANCY IN SHELL : 12.47 REMARK 200 R MERGE FOR SHELL (I) : 1.33000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.650 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: ROD-LIKE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS PH=6.5, 0.2M MAGNESIUM REMARK 280 CHLORIDE HEXAHYDRATE AND 25% POLYETHYLENE GLYCOL 3,350 (V/V)., REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.22400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 20.61200 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 20.61200 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 41.22400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 460 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MSE A 1 REMARK 465 THR A 2 REMARK 465 ARG A 293 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 3 CG CD CE NZ REMARK 470 SER A 7 OG REMARK 470 ASP A 118 CG OD1 OD2 REMARK 470 VAL A 119 CG1 CG2 REMARK 470 LYS A 125 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH12 ARG A 138 O HOH A 404 1.29 REMARK 500 HD1 HIS A 207 O HOH A 406 1.45 REMARK 500 HD1 HIS A 36 O HOH A 408 1.51 REMARK 500 OE1 GLN A 44 O HOH A 401 1.81 REMARK 500 OE2 GLU A 101 O HOH A 402 1.93 REMARK 500 O HOH A 417 O HOH A 556 1.95 REMARK 500 OD2 ASP A 204 O HOH A 403 1.96 REMARK 500 O HOH A 474 O HOH A 560 1.98 REMARK 500 NH1 ARG A 138 O HOH A 404 1.99 REMARK 500 O HOH A 500 O HOH A 532 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 440 O HOH A 449 4556 1.90 REMARK 500 O HOH A 436 O HOH A 505 4556 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 26 27.10 -142.61 REMARK 500 ALA A 152 -129.08 50.11 REMARK 500 ARG A 205 38.60 -85.33 REMARK 500 GLN A 240 -117.30 -104.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 312 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 20 O REMARK 620 2 HOH A 520 O 170.4 REMARK 620 3 HOH A 538 O 102.1 68.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 307 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 112 OG1 REMARK 620 2 ALA A 113 O 108.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 306 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 193 O REMARK 620 2 ALA A 248 O 122.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 313 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 258 O REMARK 620 2 GLU A 262 OE1 107.7 REMARK 620 3 HOH A 480 O 114.2 114.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 309 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 421 O REMARK 620 2 HOH A 475 O 64.7 REMARK 620 3 HOH A 480 O 117.8 99.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 311 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 496 O REMARK 620 2 HOH A 542 O 123.4 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 313 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 314 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 315 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 316 DBREF 6J7T A 2 293 UNP P96356 P96356_MYCTU 2 293 SEQADV 6J7T MSE A -19 UNP P96356 EXPRESSION TAG SEQADV 6J7T GLY A -18 UNP P96356 EXPRESSION TAG SEQADV 6J7T SER A -17 UNP P96356 EXPRESSION TAG SEQADV 6J7T SER A -16 UNP P96356 EXPRESSION TAG SEQADV 6J7T HIS A -15 UNP P96356 EXPRESSION TAG SEQADV 6J7T HIS A -14 UNP P96356 EXPRESSION TAG SEQADV 6J7T HIS A -13 UNP P96356 EXPRESSION TAG SEQADV 6J7T HIS A -12 UNP P96356 EXPRESSION TAG SEQADV 6J7T HIS A -11 UNP P96356 EXPRESSION TAG SEQADV 6J7T HIS A -10 UNP P96356 EXPRESSION TAG SEQADV 6J7T SER A -9 UNP P96356 EXPRESSION TAG SEQADV 6J7T SER A -8 UNP P96356 EXPRESSION TAG SEQADV 6J7T GLY A -7 UNP P96356 EXPRESSION TAG SEQADV 6J7T LEU A -6 UNP P96356 EXPRESSION TAG SEQADV 6J7T VAL A -5 UNP P96356 EXPRESSION TAG SEQADV 6J7T PRO A -4 UNP P96356 EXPRESSION TAG SEQADV 6J7T ARG A -3 UNP P96356 EXPRESSION TAG SEQADV 6J7T GLY A -2 UNP P96356 EXPRESSION TAG SEQADV 6J7T SER A -1 UNP P96356 EXPRESSION TAG SEQADV 6J7T HIS A 0 UNP P96356 EXPRESSION TAG SEQADV 6J7T MSE A 1 UNP P96356 EXPRESSION TAG SEQADV 6J7T ALA A 82 UNP P96356 ASP 82 ENGINEERED MUTATION SEQRES 1 A 313 MSE GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 313 LEU VAL PRO ARG GLY SER HIS MSE THR LYS PRO TYR SER SEQRES 3 A 313 SER PRO PRO THR ASN LEU ARG SER LEU ARG ASP ARG LEU SEQRES 4 A 313 THR GLN VAL ALA GLU ARG GLN GLY VAL VAL PHE GLY ARG SEQRES 5 A 313 LEU GLN ARG HIS VAL ALA MSE ILE VAL VAL ALA GLN PHE SEQRES 6 A 313 ALA ALA THR LEU THR ASP ASP THR GLY ALA PRO LEU LEU SEQRES 7 A 313 LEU VAL LYS GLY GLY SER SER LEU GLU LEU ARG ARG GLY SEQRES 8 A 313 ILE PRO ASP SER ARG THR SER LYS ASP PHE ALA THR VAL SEQRES 9 A 313 ALA ARG ARG ASP ILE GLU LEU ILE HIS GLU GLN LEU ALA SEQRES 10 A 313 ASP ALA GLY GLU THR GLY TRP GLU GLY PHE THR ALA ILE SEQRES 11 A 313 PHE THR ALA PRO GLU GLU ILE ASP VAL PRO GLY MSE PRO SEQRES 12 A 313 VAL LYS PRO ARG ARG PHE THR ALA LYS LEU SER TYR ARG SEQRES 13 A 313 GLY ARG ALA PHE ALA THR VAL PRO ILE GLU VAL SER SER SEQRES 14 A 313 VAL GLU ALA GLY ASN ALA ASP GLN PHE ASP THR LEU THR SEQRES 15 A 313 SER ASP ALA LEU GLY LEU VAL GLY VAL PRO ALA ALA VAL SEQRES 16 A 313 ALA VAL PRO CYS MSE THR ILE PRO TRP GLN ILE ALA GLN SEQRES 17 A 313 LYS LEU HIS ALA VAL THR ALA VAL LEU GLU GLU PRO LYS SEQRES 18 A 313 VAL ASN ASP ARG ALA HIS ASP LEU VAL ASP LEU GLN LEU SEQRES 19 A 313 LEU GLU GLY LEU LEU LEU ASP ALA ASP LEU MSE PRO THR SEQRES 20 A 313 ARG SER ALA CYS ILE ALA ILE PHE GLU ALA ARG ALA GLN SEQRES 21 A 313 HIS PRO TRP PRO PRO ARG VAL ALA THR LEU PRO HIS TRP SEQRES 22 A 313 PRO LEU ILE TYR ALA GLY ALA LEU GLU GLY LEU ASP HIS SEQRES 23 A 313 LEU GLU LEU ALA ARG THR VAL ASP ALA ALA ALA GLN ALA SEQRES 24 A 313 VAL GLN ARG PHE VAL ALA ARG ILE ASP ARG ALA THR LYS SEQRES 25 A 313 ARG MODRES 6J7T MSE A 39 MET MODIFIED RESIDUE MODRES 6J7T MSE A 122 MET MODIFIED RESIDUE MODRES 6J7T MSE A 180 MET MODIFIED RESIDUE MODRES 6J7T MSE A 225 MET MODIFIED RESIDUE HET MSE A 39 17 HET MSE A 122 17 HET MSE A 180 29 HET MSE A 225 17 HET MG A 301 1 HET MG A 302 1 HET MG A 303 1 HET MG A 304 1 HET MG A 305 1 HET MG A 306 1 HET MG A 307 1 HET MG A 308 1 HET MG A 309 1 HET MG A 310 1 HET MG A 311 1 HET MG A 312 1 HET MG A 313 1 HET MG A 314 1 HET MG A 315 1 HET GOL A 316 13 HETNAM MSE SELENOMETHIONINE HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 2 MG 15(MG 2+) FORMUL 17 GOL C3 H8 O3 FORMUL 18 HOH *175(H2 O) HELIX 1 AA1 ASN A 11 GLN A 26 1 16 HELIX 2 AA2 VAL A 29 THR A 48 1 20 HELIX 3 AA3 LYS A 61 GLY A 71 1 11 HELIX 4 AA4 ASP A 88 GLY A 103 1 16 HELIX 5 AA5 ASP A 164 VAL A 169 1 6 HELIX 6 AA6 THR A 181 THR A 194 1 14 HELIX 7 AA7 ALA A 206 LEU A 219 1 14 HELIX 8 AA8 LEU A 220 ALA A 222 5 3 HELIX 9 AA9 ASP A 223 ALA A 239 1 17 HELIX 10 AB1 HIS A 252 GLU A 262 1 11 HELIX 11 AB2 THR A 272 ALA A 290 1 19 SHEET 1 AA1 5 LEU A 58 VAL A 60 0 SHEET 2 AA1 5 PHE A 81 ALA A 85 -1 O VAL A 84 N LEU A 59 SHEET 3 AA1 5 ARG A 138 SER A 149 1 O SER A 148 N ALA A 85 SHEET 4 AA1 5 ARG A 127 TYR A 135 -1 N PHE A 129 O ILE A 145 SHEET 5 AA1 5 PHE A 107 PHE A 111 -1 N ILE A 110 O LYS A 132 SHEET 1 AA2 5 LEU A 58 VAL A 60 0 SHEET 2 AA2 5 PHE A 81 ALA A 85 -1 O VAL A 84 N LEU A 59 SHEET 3 AA2 5 ARG A 138 SER A 149 1 O SER A 148 N ALA A 85 SHEET 4 AA2 5 ARG A 127 TYR A 135 -1 N PHE A 129 O ILE A 145 SHEET 5 AA2 5 GLU A 115 GLU A 116 -1 N GLU A 115 O ARG A 128 SHEET 1 AA3 2 ASP A 159 SER A 163 0 SHEET 2 AA3 2 VAL A 175 CYS A 179 -1 O VAL A 177 N LEU A 161 LINK OH TYR A 5 MG MG A 310 1555 1555 2.10 LINK O THR A 20 MG MG A 312 1555 1555 2.89 LINK C ALA A 38 N MSE A 39 1555 1555 1.33 LINK C MSE A 39 N ILE A 40 1555 1555 1.34 LINK OG1 THR A 112 MG MG A 307 1555 1555 2.84 LINK O ALA A 113 MG MG A 307 1555 1555 2.49 LINK C GLY A 121 N MSE A 122 1555 1555 1.33 LINK C MSE A 122 N PRO A 123 1555 1555 1.34 LINK C CYS A 179 N MSE A 180 1555 1555 1.33 LINK C MSE A 180 N THR A 181 1555 1555 1.33 LINK O VAL A 193 MG MG A 306 1555 1555 2.81 LINK C LEU A 224 N MSE A 225 1555 1555 1.33 LINK C MSE A 225 N PRO A 226 1555 1555 1.34 LINK O ALA A 248 MG MG A 306 1555 1555 2.47 LINK O ALA A 258 MG MG A 313 1555 1555 2.70 LINK OE1 GLU A 262 MG MG A 313 1555 1555 2.62 LINK MG MG A 303 O HOH A 567 1555 1555 2.88 LINK MG MG A 309 O HOH A 421 1555 1555 2.90 LINK MG MG A 309 O HOH A 475 1555 1555 2.85 LINK MG MG A 311 O HOH A 496 1555 1555 2.77 LINK MG MG A 311 O HOH A 542 1555 1555 2.22 LINK MG MG A 309 O HOH A 480 1555 3565 2.59 LINK MG MG A 312 O HOH A 520 1555 3565 3.00 LINK MG MG A 312 O HOH A 538 1555 3565 2.24 LINK MG MG A 313 O HOH A 480 1555 3565 2.66 CISPEP 1 TRP A 243 PRO A 244 0 -2.97 SITE 1 AC1 6 ARG A 138 ASP A 221 ALA A 222 LEU A 224 SITE 2 AC1 6 MSE A 225 MG A 302 SITE 1 AC2 4 LEU A 12 ARG A 13 ARG A 138 MG A 301 SITE 1 AC3 3 GLN A 157 PHE A 158 HOH A 567 SITE 1 AC4 3 GLU A 216 PHE A 283 ARG A 286 SITE 1 AC5 4 ALA A 195 VAL A 196 LEU A 197 ARG A 246 SITE 1 AC6 4 VAL A 193 THR A 194 VAL A 247 ALA A 248 SITE 1 AC7 3 THR A 112 ALA A 113 PHE A 129 SITE 1 AC8 2 GLY A 153 TRP A 184 SITE 1 AC9 4 PHE A 158 HOH A 421 HOH A 475 HOH A 480 SITE 1 AD1 5 TYR A 5 ARG A 18 GLN A 21 VAL A 22 SITE 2 AD1 5 ARG A 25 SITE 1 AD2 3 GLN A 188 HOH A 496 HOH A 542 SITE 1 AD3 5 THR A 20 ALA A 23 GLU A 24 HOH A 520 SITE 2 AD3 5 HOH A 538 SITE 1 AD4 5 THR A 160 ALA A 258 GLU A 262 GOL A 316 SITE 2 AD4 5 HOH A 480 SITE 1 AD5 3 ARG A 87 ASP A 88 LEU A 91 SITE 1 AD6 3 PRO A 226 SER A 229 LYS A 292 SITE 1 AD7 8 PHE A 158 ASP A 159 THR A 181 GLU A 262 SITE 2 AD7 8 MG A 313 HOH A 441 HOH A 456 HOH A 535 CRYST1 94.692 94.692 61.836 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010561 0.006097 0.000000 0.00000 SCALE2 0.000000 0.012194 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016172 0.00000