HEADER IMMUNE SYSTEM 18-JAN-19 6J7W TITLE CRYSTAL STRUCTURE OF HUMAN BCMA IN COMPLEX WITH UNIAB(TM) VH COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNIAB; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: HEAVY CHAIN ANTIBODY; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER 17; COMPND 8 CHAIN: C, D; COMPND 9 SYNONYM: B-CELL MATURATION PROTEIN; COMPND 10 ENGINEERED: YES; COMPND 11 OTHER_DETAILS: HUMAN B-CELL MATURATION ANTIGEN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: HEK 293; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: BCMA; SOURCE 13 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 15 EXPRESSION_SYSTEM_CELL_LINE: HEK 293 KEYWDS HEAVY CHAIN ANTIBODIES, VH DOMAINS, DOMAIN ANTIBODIES, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR S.C.CLARKE,B.MA,N.D.TRINKLEIN,U.SCHELLENBERGER,M.OSBORN,L.OUISSE, AUTHOR 2 A.BOUDREAU,L.DAVISON,K.E.HARRIS,H.UGAMRAJ,A.BALASUBRAMANI,K.DANG, AUTHOR 3 B.JORGENSEN,H.OGANA,D.PHAM,P.PRATAP,P.SANKARAN,I.ANEGON,W.VAN AUTHOR 4 SCHOOTEN,M.BRUGGEMANN,R.BUELOW,S.FORCE ALDRED REVDAT 3 13-NOV-24 6J7W 1 REMARK REVDAT 2 22-NOV-23 6J7W 1 REMARK REVDAT 1 06-FEB-19 6J7W 0 JRNL AUTH S.C.CLARKE,B.MA,N.D.TRINKLEIN,U.SCHELLENBERGER,M.J.OSBORN, JRNL AUTH 2 L.H.OUISSE,A.BOUDREAU,L.M.DAVISON,K.E.HARRIS,H.S.UGAMRAJ, JRNL AUTH 3 A.BALASUBRAMANI,K.H.DANG,B.JORGENSEN,H.A.N.OGANA,D.T.PHAM, JRNL AUTH 4 P.P.PRATAP,P.SANKARAN,I.ANEGON,W.C.VAN SCHOOTEN, JRNL AUTH 5 M.BRUGGEMANN,R.BUELOW,S.FORCE ALDRED JRNL TITL MULTISPECIFIC ANTIBODY DEVELOPMENT PLATFORM BASED ON HUMAN JRNL TITL 2 HEAVY CHAIN ANTIBODIES JRNL REF FRONT IMMUNOL V. 9 3037 2018 JRNL REFN ESSN 1664-3224 JRNL PMID 30666250 JRNL DOI 10.3389/FIMMU.2018.03037 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0230 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 9739 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 514 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 701 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.73 REMARK 3 BIN R VALUE (WORKING SET) : 0.2790 REMARK 3 BIN FREE R VALUE SET COUNT : 32 REMARK 3 BIN FREE R VALUE : 0.3860 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2311 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 34 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.68000 REMARK 3 B22 (A**2) : 0.90000 REMARK 3 B33 (A**2) : 1.78000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.410 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.352 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.278 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.200 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.915 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2365 ; 0.009 ; 0.014 REMARK 3 BOND LENGTHS OTHERS (A): 1963 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3210 ; 1.350 ; 1.654 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4621 ; 0.868 ; 1.644 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 307 ; 7.555 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 119 ;31.997 ;21.933 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 354 ;20.844 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;17.815 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 299 ; 0.063 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2743 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 445 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6J7W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1300010532. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-DEC-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : POINTLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10364 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.590 REMARK 200 RESOLUTION RANGE LOW (A) : 48.990 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.59 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 0.26800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3ZHK, 4ZFO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM MALONATE PH 4.0 AND 20% REMARK 280 PEG 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.74550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 66.74550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 32.69600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 36.90300 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 32.69600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 36.90300 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 66.74550 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 32.69600 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 36.90300 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 66.74550 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 32.69600 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 36.90300 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN D 41 REMARK 465 ALA D 42 REMARK 465 SER D 43 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 65 CG CD CE NZ REMARK 470 ASN C 30 CG OD1 ND2 REMARK 470 ARG C 38 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 65 CG CD CE NZ REMARK 470 ARG B 87 CG CD NE CZ NH1 NH2 REMARK 470 GLN D 6 CG CD OE1 NE2 REMARK 470 GLN D 9 CG CD OE1 NE2 REMARK 470 ASN D 30 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP B 55 OG SER B 57 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 48 -53.37 -137.09 REMARK 500 SER A 63 0.01 -64.83 REMARK 500 VAL A 64 -16.96 -145.63 REMARK 500 CYS C 36 67.46 -106.06 REMARK 500 VAL B 48 -44.08 -136.55 REMARK 500 VAL B 64 -13.03 -142.33 REMARK 500 GLN D 24 -38.93 -38.38 REMARK 500 THR D 35 -1.95 -58.74 REMARK 500 CYS D 36 50.85 -142.85 REMARK 500 REMARK 500 REMARK: NULL DBREF 6J7W A 1 118 PDB 6J7W 6J7W 1 118 DBREF 6J7W C 5 43 UNP Q02223 TNR17_HUMAN 6 44 DBREF 6J7W B 1 118 PDB 6J7W 6J7W 1 118 DBREF 6J7W D 5 43 UNP Q02223 TNR17_HUMAN 6 44 SEQRES 1 A 118 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 A 118 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 A 118 PHE THR VAL SER SER TYR GLY MET SER TRP VAL ARG GLN SEQRES 4 A 118 ALA PRO GLY LYS GLY PRO GLU TRP VAL SER GLY ILE ARG SEQRES 5 A 118 GLY SER ASP GLY SER THR TYR TYR ALA ASP SER VAL LYS SEQRES 6 A 118 GLY ARG PHE THR ILE SER ARG ASP ASN SER LYS ASN THR SEQRES 7 A 118 LEU TYR LEU GLN MET ASN SER LEU ARG ALA GLU ASP THR SEQRES 8 A 118 ALA VAL TYR TYR CYS ALA LYS GLN GLY GLU ASN ASP GLY SEQRES 9 A 118 PRO PHE ASP HIS ARG GLY GLN GLY THR LEU VAL THR VAL SEQRES 10 A 118 SER SEQRES 1 C 39 GLY GLN CYS SER GLN ASN GLU TYR PHE ASP SER LEU LEU SEQRES 2 C 39 HIS ALA CYS ILE PRO CYS GLN LEU ARG CYS SER SER ASN SEQRES 3 C 39 THR PRO PRO LEU THR CYS GLN ARG TYR CYS ASN ALA SER SEQRES 1 B 118 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 B 118 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 B 118 PHE THR VAL SER SER TYR GLY MET SER TRP VAL ARG GLN SEQRES 4 B 118 ALA PRO GLY LYS GLY PRO GLU TRP VAL SER GLY ILE ARG SEQRES 5 B 118 GLY SER ASP GLY SER THR TYR TYR ALA ASP SER VAL LYS SEQRES 6 B 118 GLY ARG PHE THR ILE SER ARG ASP ASN SER LYS ASN THR SEQRES 7 B 118 LEU TYR LEU GLN MET ASN SER LEU ARG ALA GLU ASP THR SEQRES 8 B 118 ALA VAL TYR TYR CYS ALA LYS GLN GLY GLU ASN ASP GLY SEQRES 9 B 118 PRO PHE ASP HIS ARG GLY GLN GLY THR LEU VAL THR VAL SEQRES 10 B 118 SER SEQRES 1 D 39 GLY GLN CYS SER GLN ASN GLU TYR PHE ASP SER LEU LEU SEQRES 2 D 39 HIS ALA CYS ILE PRO CYS GLN LEU ARG CYS SER SER ASN SEQRES 3 D 39 THR PRO PRO LEU THR CYS GLN ARG TYR CYS ASN ALA SER FORMUL 5 HOH *34(H2 O) HELIX 1 AA1 THR A 28 TYR A 32 5 5 HELIX 2 AA2 ARG A 87 THR A 91 5 5 HELIX 3 AA3 CYS C 23 SER C 28 1 6 HELIX 4 AA4 THR B 28 TYR B 32 5 5 HELIX 5 AA5 ARG B 87 THR B 91 5 5 HELIX 6 AA6 GLN D 24 ARG D 26 5 3 HELIX 7 AA7 PRO D 33 GLN D 37 5 5 SHEET 1 AA1 4 GLN A 3 SER A 7 0 SHEET 2 AA1 4 LEU A 18 SER A 25 -1 O SER A 21 N SER A 7 SHEET 3 AA1 4 THR A 78 MET A 83 -1 O MET A 83 N LEU A 18 SHEET 4 AA1 4 PHE A 68 ASP A 73 -1 N THR A 69 O GLN A 82 SHEET 1 AA2 6 GLY A 10 VAL A 12 0 SHEET 2 AA2 6 THR A 113 VAL A 117 1 O THR A 116 N GLY A 10 SHEET 3 AA2 6 ALA A 92 GLN A 99 -1 N TYR A 94 O THR A 113 SHEET 4 AA2 6 MET A 34 GLN A 39 -1 N VAL A 37 O TYR A 95 SHEET 5 AA2 6 GLU A 46 ILE A 51 -1 O ILE A 51 N MET A 34 SHEET 6 AA2 6 THR A 58 TYR A 60 -1 O TYR A 59 N GLY A 50 SHEET 1 AA3 4 GLY A 10 VAL A 12 0 SHEET 2 AA3 4 THR A 113 VAL A 117 1 O THR A 116 N GLY A 10 SHEET 3 AA3 4 ALA A 92 GLN A 99 -1 N TYR A 94 O THR A 113 SHEET 4 AA3 4 PHE A 106 ARG A 109 -1 O ASP A 107 N LYS A 98 SHEET 1 AA4 2 GLU C 11 ASP C 14 0 SHEET 2 AA4 2 ALA C 19 PRO C 22 -1 O ALA C 19 N ASP C 14 SHEET 1 AA5 4 GLN B 3 SER B 7 0 SHEET 2 AA5 4 LEU B 18 SER B 25 -1 O SER B 21 N SER B 7 SHEET 3 AA5 4 THR B 78 MET B 83 -1 O MET B 83 N LEU B 18 SHEET 4 AA5 4 PHE B 68 ASP B 73 -1 N THR B 69 O GLN B 82 SHEET 1 AA6 6 GLY B 10 VAL B 12 0 SHEET 2 AA6 6 THR B 113 VAL B 117 1 O THR B 116 N GLY B 10 SHEET 3 AA6 6 ALA B 92 GLN B 99 -1 N TYR B 94 O THR B 113 SHEET 4 AA6 6 MET B 34 GLN B 39 -1 N VAL B 37 O TYR B 95 SHEET 5 AA6 6 GLU B 46 ILE B 51 -1 O ILE B 51 N MET B 34 SHEET 6 AA6 6 THR B 58 TYR B 60 -1 O TYR B 59 N GLY B 50 SHEET 1 AA7 4 GLY B 10 VAL B 12 0 SHEET 2 AA7 4 THR B 113 VAL B 117 1 O THR B 116 N GLY B 10 SHEET 3 AA7 4 ALA B 92 GLN B 99 -1 N TYR B 94 O THR B 113 SHEET 4 AA7 4 PHE B 106 ARG B 109 -1 O ASP B 107 N LYS B 98 SHEET 1 AA8 2 GLU D 11 ASP D 14 0 SHEET 2 AA8 2 ALA D 19 PRO D 22 -1 O ILE D 21 N TYR D 12 SSBOND 1 CYS A 22 CYS A 96 1555 1555 2.04 SSBOND 2 CYS C 7 CYS C 20 1555 1555 1.90 SSBOND 3 CYS C 23 CYS C 36 1555 1555 2.04 SSBOND 4 CYS C 27 CYS C 40 1555 1555 2.03 SSBOND 5 CYS B 22 CYS B 96 1555 1555 2.03 SSBOND 6 CYS D 7 CYS D 20 1555 1555 2.02 SSBOND 7 CYS D 23 CYS D 36 1555 1555 1.92 SSBOND 8 CYS D 27 CYS D 40 1555 1555 2.03 CRYST1 65.392 73.806 133.491 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015292 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013549 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007491 0.00000