HEADER PEPTIDE BINDING PROTEIN/HYDROLASE 22-JAN-19 6J9H TITLE CRYSTAL STRUCTURE OF SVBP-VASH1 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: SMALL VASOHIBIN-BINDING PROTEIN; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: COILED COIL DOMAIN-CONTAINING PROTEIN 23; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: TUBULINYL-TYR CARBOXYPEPTIDASE 1; COMPND 8 CHAIN: B, D; COMPND 9 SYNONYM: TUBULIN CARBOXYPEPTIDASE 1,TYROSINE CARBOXYPEPTIDASE 1,TTCP COMPND 10 1,VASOHIBIN-1; COMPND 11 EC: 3.4.17.17; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SVBP, CCDC23; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: VASH1, KIAA1036, VASH; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS PROTEASE, COMPLEX, PEPTIDE BINDING PROTEIN, STRUCTURAL GENOMICS, KEYWDS 2 STRUCTURAL GENOMICS CONSORTIUM, SGC, PEPTIDE BINDING PROTEIN- KEYWDS 3 HYDROLASE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.LIAO,J.GAO,C.XU,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 3 22-NOV-23 6J9H 1 REMARK REVDAT 2 17-JUL-19 6J9H 1 JRNL REVDAT 1 19-JUN-19 6J9H 0 JRNL AUTH S.LIAO,G.RAJENDRAPRASAD,N.WANG,S.EIBES,J.GAO,H.YU,G.WU,X.TU, JRNL AUTH 2 H.HUANG,M.BARISIC,C.XU JRNL TITL MOLECULAR BASIS OF VASOHIBINS-MEDIATED DETYROSINATION AND JRNL TITL 2 ITS IMPACT ON SPINDLE FUNCTION AND MITOSIS. JRNL REF CELL RES. V. 29 533 2019 JRNL REFN ISSN 1001-0602 JRNL PMID 31171830 JRNL DOI 10.1038/S41422-019-0187-Y REMARK 2 REMARK 2 RESOLUTION. 2.31 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.14_3260: 000) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.31 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 62.20 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 37795 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.249 REMARK 3 R VALUE (WORKING SET) : 0.248 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.710 REMARK 3 FREE R VALUE TEST SET COUNT : 1781 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 62.2235 - 5.4219 0.99 2935 132 0.2414 0.2335 REMARK 3 2 5.4219 - 4.3038 1.00 2842 147 0.2165 0.2240 REMARK 3 3 4.3038 - 3.7599 1.00 2794 133 0.2073 0.2494 REMARK 3 4 3.7599 - 3.4161 1.00 2773 137 0.2456 0.3075 REMARK 3 5 3.4161 - 3.1713 1.00 2756 148 0.2666 0.3020 REMARK 3 6 3.1713 - 2.9843 1.00 2761 135 0.2738 0.2977 REMARK 3 7 2.9843 - 2.8349 1.00 2753 137 0.2824 0.2875 REMARK 3 8 2.8349 - 2.7115 1.00 2742 146 0.2742 0.3251 REMARK 3 9 2.7115 - 2.6071 1.00 2739 140 0.2717 0.2863 REMARK 3 10 2.6071 - 2.5171 1.00 2742 132 0.2876 0.2658 REMARK 3 11 2.5171 - 2.4384 1.00 2715 140 0.2821 0.3132 REMARK 3 12 2.4384 - 2.3687 1.00 2751 122 0.2802 0.2956 REMARK 3 13 2.3687 - 2.3063 1.00 2711 132 0.2979 0.3410 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.670 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4409 REMARK 3 ANGLE : 1.376 5942 REMARK 3 CHIRALITY : 0.065 635 REMARK 3 PLANARITY : 0.006 764 REMARK 3 DIHEDRAL : 11.351 2706 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -0.1665 -10.0602 -32.9116 REMARK 3 T TENSOR REMARK 3 T11: 0.2129 T22: 0.2331 REMARK 3 T33: 0.2936 T12: 0.0091 REMARK 3 T13: 0.0254 T23: -0.0266 REMARK 3 L TENSOR REMARK 3 L11: 0.4867 L22: 0.3938 REMARK 3 L33: 1.4544 L12: 0.0497 REMARK 3 L13: 0.3799 L23: 0.4404 REMARK 3 S TENSOR REMARK 3 S11: 0.1175 S12: 0.0311 S13: 0.0056 REMARK 3 S21: 0.0612 S22: -0.0121 S23: -0.0152 REMARK 3 S31: 0.0852 S32: 0.0635 S33: -0.0909 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6J9H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1300010712. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37912 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.310 REMARK 200 RESOLUTION RANGE LOW (A) : 75.030 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 12.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.31 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 13.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX (1.14_3260: 000) REMARK 200 STARTING MODEL: 6J91 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M NA CITRATE TRIBASIC DIHYDRATE PH REMARK 280 5.5, 16% PEG 8000, 0.01M CADMIUM CHLORIDE HYDRATE, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.75800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.02050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.68600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 63.02050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.75800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.68600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 PRO A 3 REMARK 465 PRO A 4 REMARK 465 ALA A 5 REMARK 465 ARG A 6 REMARK 465 LYS A 7 REMARK 465 GLU A 8 REMARK 465 LYS A 9 REMARK 465 THR A 10 REMARK 465 LYS A 11 REMARK 465 VAL A 12 REMARK 465 LYS A 13 REMARK 465 GLU A 14 REMARK 465 SER A 15 REMARK 465 VAL A 16 REMARK 465 SER A 17 REMARK 465 ARG A 18 REMARK 465 VAL A 19 REMARK 465 GLU A 20 REMARK 465 LYS A 21 REMARK 465 GLN A 51 REMARK 465 GLN A 52 REMARK 465 GLN A 53 REMARK 465 PHE A 54 REMARK 465 ASP A 55 REMARK 465 GLU A 56 REMARK 465 PHE A 57 REMARK 465 CYS A 58 REMARK 465 LYS A 59 REMARK 465 GLN A 60 REMARK 465 MET A 61 REMARK 465 GLN A 62 REMARK 465 PRO A 63 REMARK 465 PRO A 64 REMARK 465 GLY A 65 REMARK 465 GLU A 66 REMARK 465 LYS B 304 REMARK 465 ILE B 305 REMARK 465 GLY B 306 REMARK 465 MET C 1 REMARK 465 ASP C 2 REMARK 465 PRO C 3 REMARK 465 PRO C 4 REMARK 465 ALA C 5 REMARK 465 ARG C 6 REMARK 465 LYS C 7 REMARK 465 GLU C 8 REMARK 465 LYS C 9 REMARK 465 THR C 10 REMARK 465 LYS C 11 REMARK 465 VAL C 12 REMARK 465 LYS C 13 REMARK 465 GLU C 14 REMARK 465 SER C 15 REMARK 465 VAL C 16 REMARK 465 SER C 17 REMARK 465 ARG C 18 REMARK 465 VAL C 19 REMARK 465 GLU C 20 REMARK 465 LYS C 21 REMARK 465 ALA C 22 REMARK 465 LYS C 23 REMARK 465 GLN C 24 REMARK 465 GLN C 51 REMARK 465 GLN C 52 REMARK 465 GLN C 53 REMARK 465 PHE C 54 REMARK 465 ASP C 55 REMARK 465 GLU C 56 REMARK 465 PHE C 57 REMARK 465 CYS C 58 REMARK 465 LYS C 59 REMARK 465 GLN C 60 REMARK 465 MET C 61 REMARK 465 GLN C 62 REMARK 465 PRO C 63 REMARK 465 PRO C 64 REMARK 465 GLY C 65 REMARK 465 GLU C 66 REMARK 465 LYS D 304 REMARK 465 ILE D 305 REMARK 465 GLY D 306 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 274 O HOH B 401 1.96 REMARK 500 OG1 THR D 185 O HOH D 401 2.01 REMARK 500 O HOH B 437 O HOH B 453 2.07 REMARK 500 O GLN B 93 O HOH B 402 2.08 REMARK 500 OE1 GLU B 171 O HOH B 403 2.11 REMARK 500 O VAL B 263 O HOH B 404 2.11 REMARK 500 O GLU D 224 O HOH D 402 2.12 REMARK 500 OE2 GLU D 131 O HOH D 403 2.13 REMARK 500 OE1 GLU D 295 O HOH D 404 2.14 REMARK 500 O PRO D 105 O HOH D 405 2.15 REMARK 500 OE1 GLU D 171 O HOH D 406 2.16 REMARK 500 OE1 GLU B 295 O HOH B 405 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP B 100 NZ LYS D 276 3554 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 25 CB - CG - CD ANGL. DEV. = -26.3 DEGREES REMARK 500 ARG B 234 NE - CZ - NH1 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG B 234 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG B 299 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 LYS D 90 CB - CG - CD ANGL. DEV. = 18.1 DEGREES REMARK 500 ARG D 94 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG D 234 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG D 287 CA - CB - CG ANGL. DEV. = -15.4 DEGREES REMARK 500 ARG D 302 CA - CB - CG ANGL. DEV. = 14.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 70 -167.98 -76.90 REMARK 500 ASP B 87 67.72 -104.86 REMARK 500 ASP B 100 43.46 -107.07 REMARK 500 GLN B 133 153.65 75.81 REMARK 500 LYS B 168 -166.00 -122.13 REMARK 500 MET B 227 -83.48 -134.18 REMARK 500 GLU C 48 33.77 -92.21 REMARK 500 ASP D 87 67.22 -105.50 REMARK 500 ASP D 100 45.84 -107.55 REMARK 500 GLN D 133 153.85 76.03 REMARK 500 LYS D 168 -164.31 -122.05 REMARK 500 MET D 227 -84.20 -133.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: VASH1 RELATED DB: TARGETTRACK DBREF 6J9H A 1 66 UNP Q8N300 SVBP_HUMAN 1 66 DBREF 6J9H B 70 306 UNP Q7L8A9 VASH1_HUMAN 70 306 DBREF 6J9H C 1 66 UNP Q8N300 SVBP_HUMAN 1 66 DBREF 6J9H D 70 306 UNP Q7L8A9 VASH1_HUMAN 70 306 SEQADV 6J9H MET B 69 UNP Q7L8A9 INITIATING METHIONINE SEQADV 6J9H MET D 69 UNP Q7L8A9 INITIATING METHIONINE SEQRES 1 A 66 MET ASP PRO PRO ALA ARG LYS GLU LYS THR LYS VAL LYS SEQRES 2 A 66 GLU SER VAL SER ARG VAL GLU LYS ALA LYS GLN LYS SER SEQRES 3 A 66 ALA GLN GLN GLU LEU LYS GLN ARG GLN ARG ALA GLU ILE SEQRES 4 A 66 TYR ALA LEU ASN ARG VAL MET THR GLU LEU GLU GLN GLN SEQRES 5 A 66 GLN PHE ASP GLU PHE CYS LYS GLN MET GLN PRO PRO GLY SEQRES 6 A 66 GLU SEQRES 1 B 238 MET ASP GLU ALA THR TRP GLU ARG MET TRP LYS HIS VAL SEQRES 2 B 238 ALA LYS ILE HIS PRO ASP GLY GLU LYS VAL ALA GLN ARG SEQRES 3 B 238 ILE ARG GLY ALA THR ASP LEU PRO LYS ILE PRO ILE PRO SEQRES 4 B 238 SER VAL PRO THR PHE GLN PRO SER THR PRO VAL PRO GLU SEQRES 5 B 238 ARG LEU GLU ALA VAL GLN ARG TYR ILE ARG GLU LEU GLN SEQRES 6 B 238 TYR ASN HIS THR GLY THR GLN PHE PHE GLU ILE LYS LYS SEQRES 7 B 238 SER ARG PRO LEU THR GLY LEU MET ASP LEU ALA LYS GLU SEQRES 8 B 238 MET THR LYS GLU ALA LEU PRO ILE LYS CYS LEU GLU ALA SEQRES 9 B 238 VAL ILE LEU GLY ILE TYR LEU THR ASN SER MET PRO THR SEQRES 10 B 238 LEU GLU ARG PHE PRO ILE SER PHE LYS THR TYR PHE SER SEQRES 11 B 238 GLY ASN TYR PHE ARG HIS ILE VAL LEU GLY VAL ASN PHE SEQRES 12 B 238 ALA GLY ARG TYR GLY ALA LEU GLY MET SER ARG ARG GLU SEQRES 13 B 238 ASP LEU MET TYR LYS PRO PRO ALA PHE ARG THR LEU SER SEQRES 14 B 238 GLU LEU VAL LEU ASP PHE GLU ALA ALA TYR GLY ARG CYS SEQRES 15 B 238 TRP HIS VAL LEU LYS LYS VAL LYS LEU GLY GLN SER VAL SEQRES 16 B 238 SER HIS ASP PRO HIS SER VAL GLU GLN ILE GLU TRP LYS SEQRES 17 B 238 HIS SER VAL LEU ASP VAL GLU ARG LEU GLY ARG ASP ASP SEQRES 18 B 238 PHE ARG LYS GLU LEU GLU ARG HIS ALA ARG ASP MET ARG SEQRES 19 B 238 LEU LYS ILE GLY SEQRES 1 C 66 MET ASP PRO PRO ALA ARG LYS GLU LYS THR LYS VAL LYS SEQRES 2 C 66 GLU SER VAL SER ARG VAL GLU LYS ALA LYS GLN LYS SER SEQRES 3 C 66 ALA GLN GLN GLU LEU LYS GLN ARG GLN ARG ALA GLU ILE SEQRES 4 C 66 TYR ALA LEU ASN ARG VAL MET THR GLU LEU GLU GLN GLN SEQRES 5 C 66 GLN PHE ASP GLU PHE CYS LYS GLN MET GLN PRO PRO GLY SEQRES 6 C 66 GLU SEQRES 1 D 238 MET ASP GLU ALA THR TRP GLU ARG MET TRP LYS HIS VAL SEQRES 2 D 238 ALA LYS ILE HIS PRO ASP GLY GLU LYS VAL ALA GLN ARG SEQRES 3 D 238 ILE ARG GLY ALA THR ASP LEU PRO LYS ILE PRO ILE PRO SEQRES 4 D 238 SER VAL PRO THR PHE GLN PRO SER THR PRO VAL PRO GLU SEQRES 5 D 238 ARG LEU GLU ALA VAL GLN ARG TYR ILE ARG GLU LEU GLN SEQRES 6 D 238 TYR ASN HIS THR GLY THR GLN PHE PHE GLU ILE LYS LYS SEQRES 7 D 238 SER ARG PRO LEU THR GLY LEU MET ASP LEU ALA LYS GLU SEQRES 8 D 238 MET THR LYS GLU ALA LEU PRO ILE LYS CYS LEU GLU ALA SEQRES 9 D 238 VAL ILE LEU GLY ILE TYR LEU THR ASN SER MET PRO THR SEQRES 10 D 238 LEU GLU ARG PHE PRO ILE SER PHE LYS THR TYR PHE SER SEQRES 11 D 238 GLY ASN TYR PHE ARG HIS ILE VAL LEU GLY VAL ASN PHE SEQRES 12 D 238 ALA GLY ARG TYR GLY ALA LEU GLY MET SER ARG ARG GLU SEQRES 13 D 238 ASP LEU MET TYR LYS PRO PRO ALA PHE ARG THR LEU SER SEQRES 14 D 238 GLU LEU VAL LEU ASP PHE GLU ALA ALA TYR GLY ARG CYS SEQRES 15 D 238 TRP HIS VAL LEU LYS LYS VAL LYS LEU GLY GLN SER VAL SEQRES 16 D 238 SER HIS ASP PRO HIS SER VAL GLU GLN ILE GLU TRP LYS SEQRES 17 D 238 HIS SER VAL LEU ASP VAL GLU ARG LEU GLY ARG ASP ASP SEQRES 18 D 238 PHE ARG LYS GLU LEU GLU ARG HIS ALA ARG ASP MET ARG SEQRES 19 D 238 LEU LYS ILE GLY FORMUL 5 HOH *127(H2 O) HELIX 1 AA1 ALA A 22 GLU A 48 1 27 HELIX 2 AA2 ASP B 70 HIS B 85 1 16 HELIX 3 AA3 ASP B 87 ARG B 96 1 10 HELIX 4 AA4 PRO B 117 LEU B 132 1 16 HELIX 5 AA5 PRO B 149 ALA B 164 1 16 HELIX 6 AA6 LYS B 168 ASN B 181 1 14 HELIX 7 AA7 ARG B 223 MET B 227 5 5 HELIX 8 AA8 THR B 235 CYS B 250 1 16 HELIX 9 AA9 VAL B 282 GLY B 286 1 5 HELIX 10 AB1 GLY B 286 ARG B 302 1 17 HELIX 11 AB2 SER C 26 GLU C 48 1 23 HELIX 12 AB3 ASP D 70 HIS D 85 1 16 HELIX 13 AB4 ASP D 87 ARG D 96 1 10 HELIX 14 AB5 PRO D 117 LEU D 132 1 16 HELIX 15 AB6 PRO D 149 ALA D 164 1 16 HELIX 16 AB7 LYS D 168 ASN D 181 1 14 HELIX 17 AB8 ARG D 223 MET D 227 5 5 HELIX 18 AB9 THR D 235 CYS D 250 1 16 HELIX 19 AC1 VAL D 282 GLY D 286 1 5 HELIX 20 AC2 GLY D 286 ARG D 302 1 17 SHEET 1 AA1 6 LYS B 229 PHE B 233 0 SHEET 2 AA1 6 ARG B 214 LEU B 218 -1 N ALA B 217 O LYS B 229 SHEET 3 AA1 6 ASN B 200 PHE B 211 -1 N LEU B 207 O LEU B 218 SHEET 4 AA1 6 LEU B 186 PHE B 197 -1 N THR B 195 O PHE B 202 SHEET 5 AA1 6 VAL B 253 LEU B 259 -1 O LYS B 255 N LYS B 194 SHEET 6 AA1 6 SER B 278 ASP B 281 -1 O LEU B 280 N VAL B 257 SHEET 1 AA2 6 LYS D 229 PHE D 233 0 SHEET 2 AA2 6 ARG D 214 LEU D 218 -1 N TYR D 215 O PHE D 233 SHEET 3 AA2 6 ASN D 200 PHE D 211 -1 N LEU D 207 O LEU D 218 SHEET 4 AA2 6 GLU D 187 PHE D 197 -1 N THR D 195 O PHE D 202 SHEET 5 AA2 6 VAL D 253 LEU D 259 -1 O LYS D 255 N LYS D 194 SHEET 6 AA2 6 SER D 278 ASP D 281 -1 O SER D 278 N LEU D 259 CRYST1 71.516 93.372 126.041 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013983 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010710 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007934 0.00000