HEADER SUGAR BINDING PROTEIN 24-JAN-19 6JAL TITLE CRYSTAL STRUCTURE OF ABC TRANSPORTER ALPHA-GLYCOSIDE-BINDING MUTANT TITLE 2 PROTEIN R356A IN LIGAND FREE FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: ABC TRANSPORTER, PERIPLASMIC SUBSTRATE-BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ALPHA-GLYBP; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS (STRAIN HB8 / ATCC 27634 / SOURCE 3 DSM 579); SOURCE 4 ORGANISM_TAXID: 300852; SOURCE 5 STRAIN: HB8 / ATCC 27634 / DSM 579; SOURCE 6 ATCC: 27634; SOURCE 7 GENE: TTHA0356; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: ROSETTA (DE3); SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS CARBOHYDRATE-BINDINGSITE, ALPHA-GLYCOSIDE-BINDING PROTEIN, LIGAND KEYWDS 2 SELECTION, MULTI-SUBSTRATE TRANSPORTER, SUGAR REPLACEMENT, VENUS KEYWDS 3 FLY-TRAP MECHANISM, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.P.KANAUJIA,M.CHANDRAVANSHI,P.GOGOI REVDAT 3 22-NOV-23 6JAL 1 REMARK REVDAT 2 06-MAY-20 6JAL 1 JRNL REVDAT 1 30-OCT-19 6JAL 0 JRNL AUTH M.CHANDRAVANSHI,P.GOGOI,S.P.KANAUJIA JRNL TITL STRUCTURAL AND THERMODYNAMIC CORRELATION ILLUMINATES THE JRNL TITL 2 SELECTIVE TRANSPORT MECHANISM OF DISACCHARIDE JRNL TITL 3 ALPHA-GLYCOSIDES THROUGH ABC TRANSPORTER. JRNL REF FEBS J. V. 287 1576 2020 JRNL REFN ISSN 1742-464X JRNL PMID 31608555 JRNL DOI 10.1111/FEBS.15093 REMARK 2 REMARK 2 RESOLUTION. 1.56 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.56 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.26 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 66308 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.128 REMARK 3 R VALUE (WORKING SET) : 0.127 REMARK 3 FREE R VALUE : 0.151 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 3348 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.56 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.60 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4793 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.53 REMARK 3 BIN R VALUE (WORKING SET) : 0.1620 REMARK 3 BIN FREE R VALUE SET COUNT : 230 REMARK 3 BIN FREE R VALUE : 0.1780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3317 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 666 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.25000 REMARK 3 B22 (A**2) : -0.30000 REMARK 3 B33 (A**2) : 0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.26000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.058 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.059 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.029 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.773 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3530 ; 0.022 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3253 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4801 ; 2.155 ; 1.944 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7515 ; 1.003 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 443 ; 5.705 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 175 ;34.884 ;22.400 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 572 ;12.797 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 39 ;18.744 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 497 ; 0.130 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3987 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 796 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6JAL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1300010760. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-FEB-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : VARIMAX HF REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM 7.2.2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.3 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 69683 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.560 REMARK 200 RESOLUTION RANGE LOW (A) : 55.260 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.03100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.56 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 8.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.06100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 15.00 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.2 REMARK 200 STARTING MODEL: 6J9W REMARK 200 REMARK 200 REMARK: MONOCLINIC REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05 M CITRIC ACID, 0.05 BIS-TRIS REMARK 280 PROPANE, 16% PEG 3350, PH 5, MICROBATCH, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 42.56500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 679 O HOH A 1075 1.58 REMARK 500 O HOH A 790 O HOH A 1011 1.64 REMARK 500 O HOH A 1110 O HOH A 1230 1.92 REMARK 500 O ACT A 501 O2 EDO A 506 2.05 REMARK 500 OE1 GLN A 1 O HOH A 601 2.06 REMARK 500 O HOH A 649 O HOH A 689 2.09 REMARK 500 O HOH A 1138 O HOH A 1250 2.12 REMARK 500 NE2 HIS A 407 O HOH A 602 2.14 REMARK 500 NE ARG A 139 O HOH A 603 2.16 REMARK 500 O HOH A 1051 O HOH A 1131 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 787 O HOH A 918 2645 1.90 REMARK 500 O HOH A 1140 O HOH A 1240 2645 1.96 REMARK 500 O HOH A 721 O HOH A 1107 2656 2.04 REMARK 500 O HOH A 649 O HOH A 814 2656 2.08 REMARK 500 O HOH A 1038 O HOH A 1107 2656 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 139 CZ ARG A 139 NH2 -0.122 REMARK 500 GLU A 153 CD GLU A 153 OE2 0.073 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 0 CG - SD - CE ANGL. DEV. = -14.2 DEGREES REMARK 500 ASP A 41 CB - CG - OD1 ANGL. DEV. = 7.7 DEGREES REMARK 500 ASP A 45 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 TYR A 53 CB - CG - CD1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 99 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 139 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG A 139 NE - CZ - NH1 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG A 139 NE - CZ - NH2 ANGL. DEV. = -5.2 DEGREES REMARK 500 ARG A 139 NE - CZ - NH2 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG A 191 NE - CZ - NH1 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG A 205 NE - CZ - NH1 ANGL. DEV. = -4.2 DEGREES REMARK 500 MET A 290 CG - SD - CE ANGL. DEV. = -10.1 DEGREES REMARK 500 ARG A 323 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 323 NE - CZ - NH2 ANGL. DEV. = 6.1 DEGREES REMARK 500 ARG A 344 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG A 344 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG A 383 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 LYS A 384 CD - CE - NZ ANGL. DEV. = 25.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 115 -74.21 -117.76 REMARK 500 ILE A 192 -64.29 76.16 REMARK 500 ARG A 219 -77.89 -117.82 REMARK 500 ALA A 229 -163.68 -102.01 REMARK 500 PRO A 357 43.32 -83.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1262 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH A1263 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH A1264 DISTANCE = 6.56 ANGSTROMS REMARK 525 HOH A1265 DISTANCE = 6.64 ANGSTROMS REMARK 525 HOH A1266 DISTANCE = 6.88 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 507 DBREF 6JAL A 1 402 UNP Q5SLD7 Q5SLD7_THET8 28 429 SEQADV 6JAL VAL A -7 UNP Q5SLD7 EXPRESSION TAG SEQADV 6JAL PRO A -6 UNP Q5SLD7 EXPRESSION TAG SEQADV 6JAL ARG A -5 UNP Q5SLD7 EXPRESSION TAG SEQADV 6JAL GLY A -4 UNP Q5SLD7 EXPRESSION TAG SEQADV 6JAL SER A -3 UNP Q5SLD7 EXPRESSION TAG SEQADV 6JAL HIS A -2 UNP Q5SLD7 EXPRESSION TAG SEQADV 6JAL MET A -1 UNP Q5SLD7 EXPRESSION TAG SEQADV 6JAL MET A 0 UNP Q5SLD7 EXPRESSION TAG SEQADV 6JAL ALA A 356 UNP Q5SLD7 ARG 383 ENGINEERED MUTATION SEQADV 6JAL HIS A 403 UNP Q5SLD7 EXPRESSION TAG SEQADV 6JAL HIS A 404 UNP Q5SLD7 EXPRESSION TAG SEQADV 6JAL HIS A 405 UNP Q5SLD7 EXPRESSION TAG SEQADV 6JAL HIS A 406 UNP Q5SLD7 EXPRESSION TAG SEQADV 6JAL HIS A 407 UNP Q5SLD7 EXPRESSION TAG SEQADV 6JAL HIS A 408 UNP Q5SLD7 EXPRESSION TAG SEQRES 1 A 416 VAL PRO ARG GLY SER HIS MET MET GLN SER GLY PRO VAL SEQRES 2 A 416 ILE ARG VAL ALA GLY ASP SER THR ALA VAL GLY GLU GLY SEQRES 3 A 416 GLY ARG TRP MET LYS GLU MET VAL GLU ALA TRP GLY LYS SEQRES 4 A 416 LYS THR GLY THR ARG VAL GLU TYR ILE ASP SER PRO ALA SEQRES 5 A 416 ASP THR ASN ASP ARG LEU ALA LEU TYR GLN GLN TYR TRP SEQRES 6 A 416 ALA ALA ARG SER PRO ASP VAL ASP VAL TYR MET ILE ASP SEQRES 7 A 416 VAL ILE TRP PRO GLY ILE VAL ALA PRO HIS ALA LEU ASP SEQRES 8 A 416 LEU LYS PRO TYR LEU THR GLU ALA GLU LEU LYS GLU PHE SEQRES 9 A 416 PHE PRO ARG ILE VAL GLN ASN ASN THR ILE ARG GLY LYS SEQRES 10 A 416 LEU THR SER LEU PRO PHE PHE THR ASP ALA GLY ILE LEU SEQRES 11 A 416 TYR TYR ARG LYS ASP LEU LEU GLU LYS TYR GLY TYR THR SEQRES 12 A 416 SER PRO PRO ARG THR TRP ASN GLU LEU GLU GLN MET ALA SEQRES 13 A 416 GLU ARG VAL MET GLU GLY GLU ARG ARG ALA GLY ASN ARG SEQRES 14 A 416 ASP PHE TRP GLY PHE VAL PHE GLN GLY LYS PRO TYR GLU SEQRES 15 A 416 GLY LEU THR CYS ASP ALA LEU GLU TRP ILE TYR SER HIS SEQRES 16 A 416 GLY GLY GLY ARG ILE VAL GLU PRO ASP GLY THR ILE SER SEQRES 17 A 416 VAL ASN ASN GLY ARG ALA ALA LEU ALA LEU ASN ARG ALA SEQRES 18 A 416 HIS GLY TRP VAL GLY ARG ILE ALA PRO GLN GLY VAL THR SEQRES 19 A 416 SER TYR ALA GLU GLU GLU ALA ARG ASN VAL TRP GLN GLN SEQRES 20 A 416 GLY ASN SER LEU PHE MET ARG ASN TRP PRO TYR ALA TYR SEQRES 21 A 416 ALA LEU GLY GLN ALA GLU GLY SER PRO ILE ARG GLY LYS SEQRES 22 A 416 PHE GLY VAL THR VAL LEU PRO LYS ALA SER ALA ASP ALA SEQRES 23 A 416 PRO ASN ALA ALA THR LEU GLY GLY TRP GLN LEU MET VAL SEQRES 24 A 416 SER ALA TYR SER ARG TYR PRO LYS GLU ALA VAL ASP LEU SEQRES 25 A 416 VAL LYS TYR LEU ALA SER TYR GLU VAL GLN LYS ASP ASN SEQRES 26 A 416 ALA VAL ARG LEU SER ARG LEU PRO THR ARG PRO ALA LEU SEQRES 27 A 416 TYR THR ASP ARG ASP VAL LEU ALA ARG ASN PRO TRP PHE SEQRES 28 A 416 ARG ASP LEU LEU PRO VAL PHE GLN ASN ALA VAL SER ALA SEQRES 29 A 416 PRO SER ASP VAL ALA GLY ALA ARG TYR ASN GLN VAL SER SEQRES 30 A 416 GLU ALA ILE TRP THR GLU VAL HIS SER VAL LEU THR GLY SEQRES 31 A 416 ARG LYS LYS GLY GLU GLN ALA VAL ARG ASP LEU GLU ALA SEQRES 32 A 416 ARG ILE ARG ARG ILE LEU ARG HIS HIS HIS HIS HIS HIS HET ACT A 501 4 HET ACT A 502 4 HET GOL A 503 6 HET PEG A 504 7 HET PEG A 505 7 HET EDO A 506 4 HET EDO A 507 4 HETNAM ACT ACETATE ION HETNAM GOL GLYCEROL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM EDO 1,2-ETHANEDIOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 ACT 2(C2 H3 O2 1-) FORMUL 4 GOL C3 H8 O3 FORMUL 5 PEG 2(C4 H10 O3) FORMUL 7 EDO 2(C2 H6 O2) FORMUL 9 HOH *666(H2 O) HELIX 1 AA1 GLU A 17 GLY A 34 1 18 HELIX 2 AA2 ASP A 45 ALA A 58 1 14 HELIX 3 AA3 TRP A 73 ALA A 78 1 6 HELIX 4 AA4 PRO A 79 ALA A 81 5 3 HELIX 5 AA5 LEU A 84 LEU A 88 5 5 HELIX 6 AA6 THR A 89 LYS A 94 1 6 HELIX 7 AA7 PHE A 97 ASN A 104 1 8 HELIX 8 AA8 LYS A 126 TYR A 132 1 7 HELIX 9 AA9 THR A 140 ALA A 158 1 19 HELIX 10 AB1 TYR A 173 HIS A 187 1 15 HELIX 11 AB2 ASN A 203 VAL A 217 1 15 HELIX 12 AB3 PRO A 222 TYR A 228 5 7 HELIX 13 AB4 ALA A 229 GLN A 239 1 11 HELIX 14 AB5 TYR A 250 GLN A 256 1 7 HELIX 15 AB6 TYR A 297 ALA A 309 1 13 HELIX 16 AB7 SER A 310 SER A 322 1 13 HELIX 17 AB8 ARG A 327 THR A 332 5 6 HELIX 18 AB9 ASP A 333 ASN A 340 1 8 HELIX 19 AC1 PRO A 341 ASP A 345 5 5 HELIX 20 AC2 LEU A 346 ASN A 352 1 7 HELIX 21 AC3 PRO A 357 GLY A 362 1 6 HELIX 22 AC4 ARG A 364 THR A 381 1 18 HELIX 23 AC5 LYS A 385 ARG A 402 1 18 SHEET 1 AA1 6 ARG A 36 SER A 42 0 SHEET 2 AA1 6 VAL A 5 ASP A 11 1 N VAL A 8 O ILE A 40 SHEET 3 AA1 6 VAL A 66 ASP A 70 1 O VAL A 66 N ALA A 9 SHEET 4 AA1 6 TRP A 287 VAL A 291 -1 O GLN A 288 N ILE A 69 SHEET 5 AA1 6 LEU A 113 THR A 117 -1 N PHE A 116 O TRP A 287 SHEET 6 AA1 6 LEU A 324 PRO A 325 -1 O LEU A 324 N THR A 117 SHEET 1 AA2 2 THR A 105 ILE A 106 0 SHEET 2 AA2 2 LYS A 109 LEU A 110 -1 O LYS A 109 N ILE A 106 SHEET 1 AA3 4 TRP A 164 VAL A 167 0 SHEET 2 AA3 4 SER A 242 ASN A 247 1 O ARG A 246 N VAL A 167 SHEET 3 AA3 4 ILE A 121 ARG A 125 -1 N TYR A 123 O MET A 245 SHEET 4 AA3 4 PHE A 266 THR A 269 -1 O THR A 269 N LEU A 122 SHEET 1 AA4 2 ALA A 282 THR A 283 0 SHEET 2 AA4 2 ALA A 353 VAL A 354 1 O VAL A 354 N ALA A 282 SITE 1 AC1 5 GLN A 351 ASN A 352 EDO A 506 HOH A 608 SITE 2 AC1 5 HOH A 656 SITE 1 AC2 9 ARG A 99 GLN A 102 TYR A 185 ARG A 191 SITE 2 AC2 9 PRO A 195 HOH A 604 HOH A 609 HOH A 640 SITE 3 AC2 9 HOH A 674 SITE 1 AC3 5 LYS A 23 TYR A 39 ASP A 41 HOH A 655 SITE 2 AC3 5 HOH A 784 SITE 1 AC4 8 GLY A 188 GLY A 189 GLY A 190 GLU A 194 SITE 2 AC4 8 ASN A 203 ARG A 205 HOH A 605 HOH A 748 SITE 1 AC5 8 VAL A 71 ASP A 118 TRP A 248 GLY A 286 SITE 2 AC5 8 TRP A 287 HOH A 617 HOH A 676 HOH A1039 SITE 1 AC6 5 ARG A 99 GLN A 351 ASN A 352 ACT A 501 SITE 2 AC6 5 HOH A1013 SITE 1 AC7 5 TYR A 307 HOH A 658 HOH A 909 HOH A 940 SITE 2 AC7 5 HOH A1030 CRYST1 53.040 85.130 55.340 90.00 92.99 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018854 0.000000 0.000985 0.00000 SCALE2 0.000000 0.011747 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018095 0.00000