HEADER METAL TRANSPORT 25-JAN-19 6JAS TITLE HUMAN SERUM TRANSFERRIN WITH IRON CITRATE BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: SEROTRANSFERRIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TRANSFERRIN,BETA-1 METAL-BINDING GLOBULIN,SIDEROPHILIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606 KEYWDS TRANSFERRIN, IRON, METAL TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR M.WANG,H.WANG,H.SUN REVDAT 2 22-NOV-23 6JAS 1 LINK REVDAT 1 29-JAN-20 6JAS 0 JRNL AUTH M.WANG,H.WANG,H.SUN JRNL TITL BINDING OF RUTHENIUM AND OSMIUM AT NON-IRON SITES OF JRNL TITL 2 TRANSFERRIN EXPLAINS THEIR IRON-INDEPENDENT CELLULAR UPTAKE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14-3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.58 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 3 NUMBER OF REFLECTIONS : 38649 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.180 REMARK 3 FREE R VALUE TEST SET COUNT : 2003 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.5867 - 6.0245 0.99 2857 160 0.1860 0.2364 REMARK 3 2 6.0245 - 4.7833 1.00 2760 151 0.1757 0.1994 REMARK 3 3 4.7833 - 4.1791 1.00 2715 173 0.1512 0.1624 REMARK 3 4 4.1791 - 3.7971 1.00 2736 151 0.1609 0.1845 REMARK 3 5 3.7971 - 3.5251 1.00 2719 145 0.1717 0.1904 REMARK 3 6 3.5251 - 3.3173 1.00 2709 151 0.1919 0.2213 REMARK 3 7 3.3173 - 3.1512 1.00 2687 152 0.1979 0.2657 REMARK 3 8 3.1512 - 3.0141 1.00 2717 144 0.2105 0.2474 REMARK 3 9 3.0141 - 2.8980 1.00 2684 141 0.2196 0.2555 REMARK 3 10 2.8980 - 2.7980 1.00 2693 156 0.2181 0.2588 REMARK 3 11 2.7980 - 2.7106 1.00 2704 131 0.2343 0.2572 REMARK 3 12 2.7106 - 2.6331 0.98 2653 133 0.2344 0.2620 REMARK 3 13 2.6331 - 2.5638 0.87 2337 128 0.2446 0.2878 REMARK 3 14 2.5638 - 2.5012 0.62 1675 87 0.2450 0.2956 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.230 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 53 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.0259 6.7144 -17.7650 REMARK 3 T TENSOR REMARK 3 T11: 0.2352 T22: 0.2745 REMARK 3 T33: 0.1819 T12: 0.1016 REMARK 3 T13: 0.0181 T23: -0.0608 REMARK 3 L TENSOR REMARK 3 L11: 3.4763 L22: 3.1977 REMARK 3 L33: 2.8435 L12: 0.3580 REMARK 3 L13: 1.1515 L23: 0.1324 REMARK 3 S TENSOR REMARK 3 S11: 0.0778 S12: 0.4639 S13: -0.0329 REMARK 3 S21: -0.3535 S22: -0.1006 S23: -0.0088 REMARK 3 S31: 0.1170 S32: 0.1800 S33: 0.0607 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 54 THROUGH 259 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.1883 17.8897 12.2651 REMARK 3 T TENSOR REMARK 3 T11: 0.1618 T22: 0.2475 REMARK 3 T33: 0.2658 T12: -0.0522 REMARK 3 T13: 0.0378 T23: -0.0212 REMARK 3 L TENSOR REMARK 3 L11: 0.7862 L22: 1.2794 REMARK 3 L33: 3.3942 L12: 0.2682 REMARK 3 L13: 0.2798 L23: 0.6079 REMARK 3 S TENSOR REMARK 3 S11: 0.1558 S12: -0.0947 S13: 0.0860 REMARK 3 S21: 0.1045 S22: -0.2524 S23: 0.1107 REMARK 3 S31: -0.1554 S32: -0.1103 S33: 0.0708 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 260 THROUGH 447 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.2300 30.6627 -4.7843 REMARK 3 T TENSOR REMARK 3 T11: 0.3478 T22: 0.3914 REMARK 3 T33: 0.3082 T12: -0.0775 REMARK 3 T13: 0.0859 T23: 0.0268 REMARK 3 L TENSOR REMARK 3 L11: 0.5113 L22: 1.9397 REMARK 3 L33: 0.6684 L12: 0.5061 REMARK 3 L13: -0.2666 L23: -0.1398 REMARK 3 S TENSOR REMARK 3 S11: 0.1368 S12: -0.1503 S13: 0.1431 REMARK 3 S21: -0.0721 S22: -0.2247 S23: -0.1577 REMARK 3 S31: -0.3131 S32: 0.3205 S33: 0.0757 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 448 THROUGH 590 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.3914 53.9074 -13.4666 REMARK 3 T TENSOR REMARK 3 T11: 0.5165 T22: 0.3663 REMARK 3 T33: 0.3646 T12: -0.1964 REMARK 3 T13: 0.0789 T23: 0.0059 REMARK 3 L TENSOR REMARK 3 L11: 1.9841 L22: 1.6331 REMARK 3 L33: 2.4287 L12: 0.8910 REMARK 3 L13: -1.0293 L23: -1.5173 REMARK 3 S TENSOR REMARK 3 S11: 0.1982 S12: -0.0811 S13: 0.2134 REMARK 3 S21: 0.3895 S22: -0.0800 S23: 0.3302 REMARK 3 S31: -0.3333 S32: -0.0379 S33: -0.1247 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 591 THROUGH 633 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.3024 40.4404 7.0778 REMARK 3 T TENSOR REMARK 3 T11: 0.7092 T22: 0.8091 REMARK 3 T33: 0.4807 T12: -0.3653 REMARK 3 T13: -0.0577 T23: 0.0559 REMARK 3 L TENSOR REMARK 3 L11: 5.2150 L22: 2.2373 REMARK 3 L33: 1.8781 L12: 0.9098 REMARK 3 L13: -0.3847 L23: -0.2355 REMARK 3 S TENSOR REMARK 3 S11: 0.0667 S12: -0.3634 S13: 0.4270 REMARK 3 S21: 0.2357 S22: -0.1185 S23: -0.2276 REMARK 3 S31: -0.1285 S32: 0.6916 S33: 0.0650 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 634 THROUGH 679 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.5395 42.7007 0.5248 REMARK 3 T TENSOR REMARK 3 T11: 0.5862 T22: 0.4784 REMARK 3 T33: 0.4412 T12: -0.2019 REMARK 3 T13: 0.1986 T23: 0.0306 REMARK 3 L TENSOR REMARK 3 L11: 3.3930 L22: 3.2169 REMARK 3 L33: 1.3184 L12: 1.7320 REMARK 3 L13: 1.0052 L23: 0.1076 REMARK 3 S TENSOR REMARK 3 S11: 0.3483 S12: -0.1936 S13: 0.4876 REMARK 3 S21: 0.5506 S22: -0.1704 S23: 0.3516 REMARK 3 S31: -0.3289 S32: 0.1274 S33: -0.1090 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6JAS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1300010773. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5-7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.14026 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40122 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.600 REMARK 200 R MERGE (I) : 0.09700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.56 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.50 REMARK 200 R MERGE FOR SHELL (I) : 0.76900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.2 REMARK 200 STARTING MODEL: 4X1B REMARK 200 REMARK 200 REMARK: PALE RED HALF-MOON SHAPED LARGE CRYSTALS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PIPES-NAOH 0.1M PH 6.6, DI-SODIUM REMARK 280 MALONATE 8 MM, GLYCEROL 18%, PEG3350 17%, EVAPORATION, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.63250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.63250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 68.28350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 78.57650 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 68.28350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 78.57650 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 53.63250 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 68.28350 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 78.57650 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 53.63250 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 68.28350 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 78.57650 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 875 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 1 REMARK 465 PRO A 2 REMARK 465 GLU A 333 REMARK 465 ALA A 334 REMARK 465 PRO A 335 REMARK 465 THR A 336 REMARK 465 ASP A 337 REMARK 465 GLU A 338 REMARK 465 LYS A 414 REMARK 465 SER A 415 REMARK 465 ASP A 416 REMARK 465 ASN A 417 REMARK 465 CYS A 418 REMARK 465 GLU A 419 REMARK 465 ASP A 420 REMARK 465 THR A 421 REMARK 465 PRO A 422 REMARK 465 GLU A 423 REMARK 465 VAL A 612 REMARK 465 THR A 613 REMARK 465 ASP A 614 REMARK 465 CYS A 615 REMARK 465 SER A 616 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 188 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 340 CG CD CE NZ REMARK 470 LYS A 365 CG CD CE NZ REMARK 470 LYS A 599 CG CD CE NZ REMARK 470 HIS A 606 CG ND1 CD2 CE1 NE2 REMARK 470 ASN A 618 CG OD1 ND2 REMARK 470 PHE A 619 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PHE A 622 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 623 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 643 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 4 46.10 -103.67 REMARK 500 PRO A 31 -165.31 -75.13 REMARK 500 SER A 125 -71.34 -70.84 REMARK 500 TRP A 128 -61.95 -146.55 REMARK 500 PHE A 153 -61.29 -102.58 REMARK 500 CYS A 179 33.68 -90.81 REMARK 500 CYS A 241 69.46 -160.53 REMARK 500 LYS A 259 79.54 -104.57 REMARK 500 LEU A 294 -50.24 68.09 REMARK 500 LYS A 340 157.03 71.75 REMARK 500 ASN A 443 109.44 -163.65 REMARK 500 TRP A 460 -63.16 -139.36 REMARK 500 LYS A 527 -38.43 -135.64 REMARK 500 GLU A 573 34.37 -94.93 REMARK 500 CYS A 577 58.10 -155.60 REMARK 500 PHE A 619 -149.22 -91.42 REMARK 500 CYS A 620 -100.62 -158.91 REMARK 500 THR A 626 -88.25 -110.93 REMARK 500 LYS A 627 111.76 -162.81 REMARK 500 LEU A 630 -54.53 66.93 REMARK 500 HIS A 642 -126.30 58.60 REMARK 500 ARG A 644 47.54 -76.94 REMARK 500 ASN A 645 32.54 -91.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 701 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 392 OD1 REMARK 620 2 TYR A 426 OH 88.1 REMARK 620 3 TYR A 517 OH 174.4 92.7 REMARK 620 4 HIS A 585 NE2 92.9 99.6 92.4 REMARK 620 5 MLI A 703 O7 85.2 92.7 89.3 167.5 REMARK 620 6 MLI A 703 O9 96.1 175.6 83.0 81.2 86.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 702 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CIT A 704 O6 REMARK 620 2 HOH A 802 O 66.7 REMARK 620 3 HOH A 870 O 152.7 140.4 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MLI A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CIT A 704 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS SEQUENCE IS NATURAL VARIANT. DBREF 6JAS A 1 679 UNP P02787 TRFE_HUMAN 20 698 SEQADV 6JAS VAL A 429 UNP P02787 ILE 448 SEE SEQUENCE DETAILS SEQRES 1 A 679 VAL PRO ASP LYS THR VAL ARG TRP CYS ALA VAL SER GLU SEQRES 2 A 679 HIS GLU ALA THR LYS CYS GLN SER PHE ARG ASP HIS MET SEQRES 3 A 679 LYS SER VAL ILE PRO SER ASP GLY PRO SER VAL ALA CYS SEQRES 4 A 679 VAL LYS LYS ALA SER TYR LEU ASP CYS ILE ARG ALA ILE SEQRES 5 A 679 ALA ALA ASN GLU ALA ASP ALA VAL THR LEU ASP ALA GLY SEQRES 6 A 679 LEU VAL TYR ASP ALA TYR LEU ALA PRO ASN ASN LEU LYS SEQRES 7 A 679 PRO VAL VAL ALA GLU PHE TYR GLY SER LYS GLU ASP PRO SEQRES 8 A 679 GLN THR PHE TYR TYR ALA VAL ALA VAL VAL LYS LYS ASP SEQRES 9 A 679 SER GLY PHE GLN MET ASN GLN LEU ARG GLY LYS LYS SER SEQRES 10 A 679 CYS HIS THR GLY LEU GLY ARG SER ALA GLY TRP ASN ILE SEQRES 11 A 679 PRO ILE GLY LEU LEU TYR CYS ASP LEU PRO GLU PRO ARG SEQRES 12 A 679 LYS PRO LEU GLU LYS ALA VAL ALA ASN PHE PHE SER GLY SEQRES 13 A 679 SER CYS ALA PRO CYS ALA ASP GLY THR ASP PHE PRO GLN SEQRES 14 A 679 LEU CYS GLN LEU CYS PRO GLY CYS GLY CYS SER THR LEU SEQRES 15 A 679 ASN GLN TYR PHE GLY TYR SER GLY ALA PHE LYS CYS LEU SEQRES 16 A 679 LYS ASP GLY ALA GLY ASP VAL ALA PHE VAL LYS HIS SER SEQRES 17 A 679 THR ILE PHE GLU ASN LEU ALA ASN LYS ALA ASP ARG ASP SEQRES 18 A 679 GLN TYR GLU LEU LEU CYS LEU ASP ASN THR ARG LYS PRO SEQRES 19 A 679 VAL ASP GLU TYR LYS ASP CYS HIS LEU ALA GLN VAL PRO SEQRES 20 A 679 SER HIS THR VAL VAL ALA ARG SER MET GLY GLY LYS GLU SEQRES 21 A 679 ASP LEU ILE TRP GLU LEU LEU ASN GLN ALA GLN GLU HIS SEQRES 22 A 679 PHE GLY LYS ASP LYS SER LYS GLU PHE GLN LEU PHE SER SEQRES 23 A 679 SER PRO HIS GLY LYS ASP LEU LEU PHE LYS ASP SER ALA SEQRES 24 A 679 HIS GLY PHE LEU LYS VAL PRO PRO ARG MET ASP ALA LYS SEQRES 25 A 679 MET TYR LEU GLY TYR GLU TYR VAL THR ALA ILE ARG ASN SEQRES 26 A 679 LEU ARG GLU GLY THR CYS PRO GLU ALA PRO THR ASP GLU SEQRES 27 A 679 CYS LYS PRO VAL LYS TRP CYS ALA LEU SER HIS HIS GLU SEQRES 28 A 679 ARG LEU LYS CYS ASP GLU TRP SER VAL ASN SER VAL GLY SEQRES 29 A 679 LYS ILE GLU CYS VAL SER ALA GLU THR THR GLU ASP CYS SEQRES 30 A 679 ILE ALA LYS ILE MET ASN GLY GLU ALA ASP ALA MET SER SEQRES 31 A 679 LEU ASP GLY GLY PHE VAL TYR ILE ALA GLY LYS CYS GLY SEQRES 32 A 679 LEU VAL PRO VAL LEU ALA GLU ASN TYR ASN LYS SER ASP SEQRES 33 A 679 ASN CYS GLU ASP THR PRO GLU ALA GLY TYR PHE ALA VAL SEQRES 34 A 679 ALA VAL VAL LYS LYS SER ALA SER ASP LEU THR TRP ASP SEQRES 35 A 679 ASN LEU LYS GLY LYS LYS SER CYS HIS THR ALA VAL GLY SEQRES 36 A 679 ARG THR ALA GLY TRP ASN ILE PRO MET GLY LEU LEU TYR SEQRES 37 A 679 ASN LYS ILE ASN HIS CYS ARG PHE ASP GLU PHE PHE SER SEQRES 38 A 679 GLU GLY CYS ALA PRO GLY SER LYS LYS ASP SER SER LEU SEQRES 39 A 679 CYS LYS LEU CYS MET GLY SER GLY LEU ASN LEU CYS GLU SEQRES 40 A 679 PRO ASN ASN LYS GLU GLY TYR TYR GLY TYR THR GLY ALA SEQRES 41 A 679 PHE ARG CYS LEU VAL GLU LYS GLY ASP VAL ALA PHE VAL SEQRES 42 A 679 LYS HIS GLN THR VAL PRO GLN ASN THR GLY GLY LYS ASN SEQRES 43 A 679 PRO ASP PRO TRP ALA LYS ASN LEU ASN GLU LYS ASP TYR SEQRES 44 A 679 GLU LEU LEU CYS LEU ASP GLY THR ARG LYS PRO VAL GLU SEQRES 45 A 679 GLU TYR ALA ASN CYS HIS LEU ALA ARG ALA PRO ASN HIS SEQRES 46 A 679 ALA VAL VAL THR ARG LYS ASP LYS GLU ALA CYS VAL HIS SEQRES 47 A 679 LYS ILE LEU ARG GLN GLN GLN HIS LEU PHE GLY SER ASN SEQRES 48 A 679 VAL THR ASP CYS SER GLY ASN PHE CYS LEU PHE ARG SER SEQRES 49 A 679 GLU THR LYS ASP LEU LEU PHE ARG ASP ASP THR VAL CYS SEQRES 50 A 679 LEU ALA LYS LEU HIS ASP ARG ASN THR TYR GLU LYS TYR SEQRES 51 A 679 LEU GLY GLU GLU TYR VAL LYS ALA VAL GLY ASN LEU ARG SEQRES 52 A 679 LYS CYS SER THR SER SER LEU LEU GLU ALA CYS THR PHE SEQRES 53 A 679 ARG ARG PRO HET FE A 701 1 HET FE A 702 1 HET MLI A 703 7 HET CIT A 704 13 HETNAM FE FE (III) ION HETNAM MLI MALONATE ION HETNAM CIT CITRIC ACID FORMUL 2 FE 2(FE 3+) FORMUL 4 MLI C3 H2 O4 2- FORMUL 5 CIT C6 H8 O7 FORMUL 6 HOH *75(H2 O) HELIX 1 AA1 SER A 12 ILE A 30 1 19 HELIX 2 AA2 SER A 44 ALA A 54 1 11 HELIX 3 AA3 ASP A 63 LEU A 72 1 10 HELIX 4 AA4 GLN A 108 LEU A 112 5 5 HELIX 5 AA5 TRP A 128 LEU A 135 1 8 HELIX 6 AA6 TYR A 136 LEU A 139 5 4 HELIX 7 AA7 PRO A 145 ASN A 152 1 8 HELIX 8 AA8 PHE A 167 GLN A 172 5 6 HELIX 9 AA9 PHE A 186 ASP A 197 1 12 HELIX 10 AB1 HIS A 207 LEU A 214 1 8 HELIX 11 AB2 ASN A 216 ASP A 221 1 6 HELIX 12 AB3 ASP A 236 CYS A 241 5 6 HELIX 13 AB4 LYS A 259 GLY A 275 1 17 HELIX 14 AB5 ASP A 310 GLY A 316 1 7 HELIX 15 AB6 GLY A 316 GLY A 329 1 14 HELIX 16 AB7 SER A 348 VAL A 363 1 16 HELIX 17 AB8 THR A 373 GLY A 384 1 12 HELIX 18 AB9 ASP A 392 CYS A 402 1 11 HELIX 19 AC1 TRP A 460 ASN A 472 1 13 HELIX 20 AC2 ARG A 475 PHE A 479 5 5 HELIX 21 AC3 SER A 492 LYS A 496 5 5 HELIX 22 AC4 SER A 501 LEU A 505 5 5 HELIX 23 AC5 TYR A 515 LYS A 527 1 13 HELIX 24 AC6 GLN A 536 ASN A 541 1 6 HELIX 25 AC7 ASN A 555 LYS A 557 5 3 HELIX 26 AC8 GLU A 572 CYS A 577 5 6 HELIX 27 AC9 ARG A 590 ASP A 592 5 3 HELIX 28 AD1 LYS A 593 GLY A 609 1 17 HELIX 29 AD2 THR A 646 GLY A 652 1 7 HELIX 30 AD3 GLY A 652 ARG A 663 1 12 HELIX 31 AD4 LYS A 664 SER A 666 5 3 HELIX 32 AD5 SER A 668 ARG A 678 1 11 SHEET 1 AA1 2 THR A 5 ALA A 10 0 SHEET 2 AA1 2 SER A 36 LYS A 41 1 O VAL A 40 N ALA A 10 SHEET 1 AA2 4 VAL A 60 LEU A 62 0 SHEET 2 AA2 4 THR A 250 ARG A 254 -1 O THR A 250 N LEU A 62 SHEET 3 AA2 4 LEU A 77 GLY A 86 -1 N VAL A 81 O VAL A 251 SHEET 4 AA2 4 PRO A 91 GLN A 92 -1 O GLN A 92 N TYR A 85 SHEET 1 AA3 4 VAL A 60 LEU A 62 0 SHEET 2 AA3 4 THR A 250 ARG A 254 -1 O THR A 250 N LEU A 62 SHEET 3 AA3 4 LEU A 77 GLY A 86 -1 N VAL A 81 O VAL A 251 SHEET 4 AA3 4 GLY A 301 LYS A 304 -1 O LEU A 303 N ALA A 82 SHEET 1 AA4 6 GLY A 156 CYS A 158 0 SHEET 2 AA4 6 LYS A 116 HIS A 119 1 N HIS A 119 O CYS A 158 SHEET 3 AA4 6 VAL A 202 LYS A 206 1 O VAL A 202 N CYS A 118 SHEET 4 AA4 6 PHE A 94 LYS A 102 -1 N VAL A 98 O VAL A 205 SHEET 5 AA4 6 TYR A 223 LEU A 226 -1 O GLU A 224 N VAL A 101 SHEET 6 AA4 6 ARG A 232 PRO A 234 -1 O LYS A 233 N LEU A 225 SHEET 1 AA5 5 GLY A 156 CYS A 158 0 SHEET 2 AA5 5 LYS A 116 HIS A 119 1 N HIS A 119 O CYS A 158 SHEET 3 AA5 5 VAL A 202 LYS A 206 1 O VAL A 202 N CYS A 118 SHEET 4 AA5 5 PHE A 94 LYS A 102 -1 N VAL A 98 O VAL A 205 SHEET 5 AA5 5 ALA A 244 PRO A 247 -1 O VAL A 246 N TYR A 95 SHEET 1 AA6 2 VAL A 342 ALA A 346 0 SHEET 2 AA6 2 ILE A 366 SER A 370 1 O GLU A 367 N TRP A 344 SHEET 1 AA7 4 MET A 389 LEU A 391 0 SHEET 2 AA7 4 ALA A 586 THR A 589 -1 O ALA A 586 N LEU A 391 SHEET 3 AA7 4 VAL A 405 ASN A 411 -1 N LEU A 408 O VAL A 587 SHEET 4 AA7 4 CYS A 637 ALA A 639 -1 O ALA A 639 N ALA A 409 SHEET 1 AA8 6 GLY A 483 CYS A 484 0 SHEET 2 AA8 6 SER A 449 HIS A 451 1 N HIS A 451 O CYS A 484 SHEET 3 AA8 6 VAL A 530 LYS A 534 1 O PHE A 532 N CYS A 450 SHEET 4 AA8 6 PHE A 427 LYS A 433 -1 N VAL A 431 O ALA A 531 SHEET 5 AA8 6 TYR A 559 LEU A 562 -1 O GLU A 560 N VAL A 432 SHEET 6 AA8 6 ARG A 568 PRO A 570 -1 O LYS A 569 N LEU A 561 SHEET 1 AA9 5 GLY A 483 CYS A 484 0 SHEET 2 AA9 5 SER A 449 HIS A 451 1 N HIS A 451 O CYS A 484 SHEET 3 AA9 5 VAL A 530 LYS A 534 1 O PHE A 532 N CYS A 450 SHEET 4 AA9 5 PHE A 427 LYS A 433 -1 N VAL A 431 O ALA A 531 SHEET 5 AA9 5 ALA A 580 ARG A 581 -1 O ALA A 580 N ALA A 428 SSBOND 1 CYS A 9 CYS A 48 1555 1555 2.03 SSBOND 2 CYS A 19 CYS A 39 1555 1555 2.03 SSBOND 3 CYS A 118 CYS A 194 1555 1555 2.04 SSBOND 4 CYS A 137 CYS A 331 1555 1555 2.02 SSBOND 5 CYS A 158 CYS A 174 1555 1555 2.03 SSBOND 6 CYS A 161 CYS A 179 1555 1555 2.02 SSBOND 7 CYS A 171 CYS A 177 1555 1555 2.03 SSBOND 8 CYS A 227 CYS A 241 1555 1555 2.03 SSBOND 9 CYS A 339 CYS A 596 1555 1555 2.03 SSBOND 10 CYS A 345 CYS A 377 1555 1555 2.03 SSBOND 11 CYS A 355 CYS A 368 1555 1555 2.04 SSBOND 12 CYS A 402 CYS A 674 1555 1555 2.03 SSBOND 13 CYS A 450 CYS A 523 1555 1555 2.03 SSBOND 14 CYS A 474 CYS A 665 1555 1555 2.03 SSBOND 15 CYS A 484 CYS A 498 1555 1555 2.03 SSBOND 16 CYS A 495 CYS A 506 1555 1555 2.03 SSBOND 17 CYS A 563 CYS A 577 1555 1555 2.03 LINK OD1 ASP A 392 FE FE A 701 1555 1555 2.22 LINK OH TYR A 426 FE FE A 701 1555 1555 2.34 LINK OH TYR A 517 FE FE A 701 1555 1555 1.99 LINK NE2 HIS A 585 FE FE A 701 1555 1555 2.35 LINK FE FE A 701 O7 MLI A 703 1555 1555 2.03 LINK FE FE A 701 O9 MLI A 703 1555 1555 1.97 LINK FE FE A 702 O6 CIT A 704 1555 1555 1.89 LINK FE FE A 702 O HOH A 802 1555 1555 2.18 LINK FE FE A 702 O HOH A 870 1555 1555 2.13 CISPEP 1 ALA A 73 PRO A 74 0 3.47 CISPEP 2 GLU A 141 PRO A 142 0 0.12 CISPEP 3 LYS A 144 PRO A 145 0 2.90 CISPEP 4 GLY A 258 LYS A 259 0 -1.42 SITE 1 AC1 5 ASP A 392 TYR A 426 TYR A 517 HIS A 585 SITE 2 AC1 5 MLI A 703 SITE 1 AC2 3 CIT A 704 HOH A 802 HOH A 870 SITE 1 AC3 10 ASP A 392 TYR A 426 THR A 452 ARG A 456 SITE 2 AC3 10 THR A 457 ALA A 458 GLY A 459 TYR A 517 SITE 3 AC3 10 HIS A 585 FE A 701 SITE 1 AC4 7 TYR A 95 ARG A 124 SER A 125 LYS A 206 SITE 2 AC4 7 FE A 702 HOH A 802 HOH A 805 CRYST1 136.567 157.153 107.265 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007322 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006363 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009323 0.00000