HEADER IMMUNE SYSTEM 27-JAN-19 6JC2 TITLE CRYSTAL STRUCTURE OF THE FAB FRAGMENT OF IPILIMUMAB COMPND MOL_ID: 1; COMPND 2 MOLECULE: IPILIMUMAB FAB HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: IPILIMUMAB FAB LIGHT CHAIN; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI-PICHIA PASTORIS SHUTTLE VECTOR SOURCE 5 PPPARG4; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 1182032; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_TAXID: 9606; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI-PICHIA PASTORIS SHUTTLE VECTOR SOURCE 11 PPPARG4; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 1182032 KEYWDS IPILIMUMAB, CTLA-4, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR Y.S.HEO REVDAT 1 11-SEP-19 6JC2 0 JRNL AUTH J.Y.LEE,H.T.LEE,S.H.LEE,H.LIM,Y.S.HEO JRNL TITL CRYSTAL STRUCTURE OF THE FAB FRAGMENT OF AN ANTI-CTLA-4 JRNL TITL 2 ANTIBODY, IPILIMUMAB, USED FOR CANCER IMMUNOTHERAPY JRNL REF BULL.KOREAN CHEM.SOC. V. 40 582 2019 JRNL REFN ISSN 0253-2964 JRNL DOI 10.1002/BKCS.11712 REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.79 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 17797 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 906 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.7867 - 4.8106 0.99 2962 155 0.1780 0.2450 REMARK 3 2 4.8106 - 3.8206 0.99 2831 159 0.1633 0.2089 REMARK 3 3 3.8206 - 3.3383 0.99 2797 148 0.2069 0.2647 REMARK 3 4 3.3383 - 3.0334 1.00 2794 138 0.2471 0.3295 REMARK 3 5 3.0334 - 2.8161 0.99 2752 166 0.2768 0.3325 REMARK 3 6 2.8161 - 2.6502 0.99 2755 140 0.2840 0.3331 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.340 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 51.59 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 1 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.0902 -24.4848 30.2539 REMARK 3 T TENSOR REMARK 3 T11: 0.3774 T22: 0.4807 REMARK 3 T33: 0.5036 T12: 0.0345 REMARK 3 T13: -0.0543 T23: -0.1108 REMARK 3 L TENSOR REMARK 3 L11: 5.8382 L22: 2.6363 REMARK 3 L33: 2.8818 L12: -1.2152 REMARK 3 L13: 0.6256 L23: -0.5707 REMARK 3 S TENSOR REMARK 3 S11: -0.3351 S12: -0.6136 S13: 0.4912 REMARK 3 S21: 0.4232 S22: 0.0126 S23: -0.0345 REMARK 3 S31: -0.4592 S32: -0.4377 S33: 0.2976 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 84 THROUGH 218 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.4080 -31.1376 8.4724 REMARK 3 T TENSOR REMARK 3 T11: 0.3168 T22: 0.3220 REMARK 3 T33: 0.4344 T12: -0.0380 REMARK 3 T13: -0.0313 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 2.6579 L22: 1.1115 REMARK 3 L33: 1.5608 L12: -0.1551 REMARK 3 L13: -0.7199 L23: 0.3380 REMARK 3 S TENSOR REMARK 3 S11: -0.0349 S12: 0.2677 S13: 0.0114 REMARK 3 S21: -0.1634 S22: 0.0207 S23: -0.1168 REMARK 3 S31: -0.1378 S32: -0.0642 S33: 0.1111 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 1 THROUGH 91 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.3394 -31.0207 10.2553 REMARK 3 T TENSOR REMARK 3 T11: 0.3364 T22: 0.3025 REMARK 3 T33: 0.5500 T12: 0.0262 REMARK 3 T13: -0.0993 T23: 0.0048 REMARK 3 L TENSOR REMARK 3 L11: 6.1442 L22: 1.4974 REMARK 3 L33: 5.4667 L12: 0.7893 REMARK 3 L13: -3.5367 L23: 0.7123 REMARK 3 S TENSOR REMARK 3 S11: 0.0016 S12: 0.0442 S13: 0.0578 REMARK 3 S21: -0.1673 S22: -0.0911 S23: -0.0825 REMARK 3 S31: -0.1815 S32: -0.0068 S33: 0.0413 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 92 THROUGH 164 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.0638 -43.8102 2.2500 REMARK 3 T TENSOR REMARK 3 T11: 0.4512 T22: 0.4751 REMARK 3 T33: 0.5401 T12: -0.0735 REMARK 3 T13: 0.0062 T23: 0.0407 REMARK 3 L TENSOR REMARK 3 L11: 2.9952 L22: 1.3652 REMARK 3 L33: 0.7916 L12: -1.5991 REMARK 3 L13: -0.3031 L23: 0.7831 REMARK 3 S TENSOR REMARK 3 S11: -0.1100 S12: 0.2748 S13: -0.1617 REMARK 3 S21: -0.0028 S22: 0.0626 S23: -0.0184 REMARK 3 S31: 0.1714 S32: -0.0591 S33: 0.0934 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 165 THROUGH 214 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.7279 -47.9378 -3.7113 REMARK 3 T TENSOR REMARK 3 T11: 0.4665 T22: 0.4344 REMARK 3 T33: 0.5486 T12: -0.0889 REMARK 3 T13: 0.0419 T23: 0.0164 REMARK 3 L TENSOR REMARK 3 L11: 8.1930 L22: 3.4667 REMARK 3 L33: 4.1500 L12: -1.9946 REMARK 3 L13: 2.4166 L23: -1.0501 REMARK 3 S TENSOR REMARK 3 S11: 0.2294 S12: 0.5573 S13: -0.6551 REMARK 3 S21: -0.2313 S22: -0.0496 S23: -0.0400 REMARK 3 S31: 0.5760 S32: -0.0132 S33: -0.2252 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6JC2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1300010824. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JAN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17797 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650 REMARK 200 RESOLUTION RANGE LOW (A) : 30.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 10000, 0.2M AMMONIUM SULFATE, REMARK 280 0.1M ACETATE PH5.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.29850 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 59.80700 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 59.80700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 61.94775 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 59.80700 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 59.80700 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 20.64925 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 59.80700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 59.80700 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 61.94775 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 59.80700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 59.80700 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 20.64925 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 41.29850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -73.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER H 133 REMARK 465 LYS H 134 REMARK 465 SER H 135 REMARK 465 THR H 136 REMARK 465 SER H 137 REMARK 465 GLY H 138 REMARK 465 LYS H 219 REMARK 465 SER H 220 REMARK 465 CYS H 221 REMARK 465 ASP H 222 REMARK 465 LYS H 223 REMARK 465 THR H 224 REMARK 465 HIS H 225 REMARK 465 HIS H 226 REMARK 465 HIS H 227 REMARK 465 HIS H 228 REMARK 465 HIS H 229 REMARK 465 HIS H 230 REMARK 465 CYS L 215 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN L 125 O HOH L 401 1.89 REMARK 500 O GLY H 103 O HOH H 401 2.01 REMARK 500 OD1 ASP H 90 O HOH H 402 2.08 REMARK 500 OE1 GLU L 82 O HOH L 402 2.11 REMARK 500 OE1 GLU H 46 O HOH H 403 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS H 201 CB CYS H 201 SG -0.103 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA L 52 -8.03 73.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER L 94 SER L 95 -146.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 H 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 H 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 H 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 L 301 DBREF 6JC2 H 1 230 PDB 6JC2 6JC2 1 230 DBREF 6JC2 L 1 215 PDB 6JC2 6JC2 1 215 SEQRES 1 H 230 GLN VAL GLN LEU VAL GLU SER GLY GLY GLY VAL VAL GLN SEQRES 2 H 230 PRO GLY ARG SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 H 230 PHE THR PHE SER SER TYR THR MET HIS TRP VAL ARG GLN SEQRES 4 H 230 ALA PRO GLY LYS GLY LEU GLU TRP VAL THR PHE ILE SER SEQRES 5 H 230 TYR ASP GLY ASN ASN LYS TYR TYR ALA ASP SER VAL LYS SEQRES 6 H 230 GLY ARG PHE THR ILE SER ARG ASP ASN SER LYS ASN THR SEQRES 7 H 230 LEU TYR LEU GLN MET ASN SER LEU ARG ALA GLU ASP THR SEQRES 8 H 230 ALA ILE TYR TYR CYS ALA ARG THR GLY TRP LEU GLY PRO SEQRES 9 H 230 PHE ASP TYR TRP GLY GLN GLY THR LEU VAL THR VAL SER SEQRES 10 H 230 SER ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU ALA SEQRES 11 H 230 PRO SER SER LYS SER THR SER GLY GLY THR ALA ALA LEU SEQRES 12 H 230 GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL THR SEQRES 13 H 230 VAL SER TRP ASN SER GLY ALA LEU THR SER GLY VAL HIS SEQRES 14 H 230 THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SER SEQRES 15 H 230 LEU SER SER VAL VAL THR VAL PRO SER SER SER LEU GLY SEQRES 16 H 230 THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SER SEQRES 17 H 230 ASN THR LYS VAL ASP LYS LYS VAL GLU PRO LYS SER CYS SEQRES 18 H 230 ASP LYS THR HIS HIS HIS HIS HIS HIS SEQRES 1 L 215 GLU ILE VAL LEU THR GLN SER PRO GLY THR LEU SER LEU SEQRES 2 L 215 SER PRO GLY GLU ARG ALA THR LEU SER CYS ARG ALA SER SEQRES 3 L 215 GLN SER VAL GLY SER SER TYR LEU ALA TRP TYR GLN GLN SEQRES 4 L 215 LYS PRO GLY GLN ALA PRO ARG LEU LEU ILE TYR GLY ALA SEQRES 5 L 215 PHE SER ARG ALA THR GLY ILE PRO ASP ARG PHE SER GLY SEQRES 6 L 215 SER GLY SER GLY THR ASP PHE THR LEU THR ILE SER ARG SEQRES 7 L 215 LEU GLU PRO GLU ASP PHE ALA VAL TYR TYR CYS GLN GLN SEQRES 8 L 215 TYR GLY SER SER PRO TRP THR PHE GLY GLN GLY THR LYS SEQRES 9 L 215 VAL GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE SEQRES 10 L 215 ILE PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR SEQRES 11 L 215 ALA SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG SEQRES 12 L 215 GLU ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SEQRES 13 L 215 SER GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER SEQRES 14 L 215 LYS ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SEQRES 15 L 215 SER LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS SEQRES 16 L 215 GLU VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SEQRES 17 L 215 SER PHE ASN ARG GLY GLU CYS HET SO4 H 301 5 HET SO4 H 302 5 HET SO4 H 303 5 HET SO4 L 301 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 4(O4 S 2-) FORMUL 7 HOH *35(H2 O) HELIX 1 AA1 THR H 28 TYR H 32 5 5 HELIX 2 AA2 ARG H 87 THR H 91 5 5 HELIX 3 AA3 SER H 192 LEU H 194 5 3 HELIX 4 AA4 LYS H 206 ASN H 209 5 4 HELIX 5 AA5 GLU L 80 PHE L 84 5 5 HELIX 6 AA6 SER L 122 SER L 128 1 7 HELIX 7 AA7 LYS L 184 HIS L 190 1 7 SHEET 1 AA1 4 GLN H 3 GLU H 6 0 SHEET 2 AA1 4 LEU H 18 SER H 25 -1 O ALA H 23 N VAL H 5 SHEET 3 AA1 4 THR H 78 MET H 83 -1 O MET H 83 N LEU H 18 SHEET 4 AA1 4 PHE H 68 ASP H 73 -1 N SER H 71 O TYR H 80 SHEET 1 AA2 6 GLY H 10 VAL H 12 0 SHEET 2 AA2 6 THR H 112 VAL H 116 1 O THR H 115 N GLY H 10 SHEET 3 AA2 6 ALA H 92 THR H 99 -1 N TYR H 94 O THR H 112 SHEET 4 AA2 6 MET H 34 GLN H 39 -1 N VAL H 37 O TYR H 95 SHEET 5 AA2 6 LEU H 45 ILE H 51 -1 O GLU H 46 N ARG H 38 SHEET 6 AA2 6 LYS H 58 TYR H 60 -1 O TYR H 59 N PHE H 50 SHEET 1 AA3 4 GLY H 10 VAL H 12 0 SHEET 2 AA3 4 THR H 112 VAL H 116 1 O THR H 115 N GLY H 10 SHEET 3 AA3 4 ALA H 92 THR H 99 -1 N TYR H 94 O THR H 112 SHEET 4 AA3 4 PHE H 105 TRP H 108 -1 O TYR H 107 N ARG H 98 SHEET 1 AA4 4 SER H 125 LEU H 129 0 SHEET 2 AA4 4 THR H 140 TYR H 150 -1 O LYS H 148 N SER H 125 SHEET 3 AA4 4 TYR H 181 PRO H 190 -1 O SER H 185 N CYS H 145 SHEET 4 AA4 4 VAL H 168 THR H 170 -1 N HIS H 169 O VAL H 186 SHEET 1 AA5 4 SER H 125 LEU H 129 0 SHEET 2 AA5 4 THR H 140 TYR H 150 -1 O LYS H 148 N SER H 125 SHEET 3 AA5 4 TYR H 181 PRO H 190 -1 O SER H 185 N CYS H 145 SHEET 4 AA5 4 VAL H 174 LEU H 175 -1 N VAL H 174 O SER H 182 SHEET 1 AA6 3 THR H 156 TRP H 159 0 SHEET 2 AA6 3 TYR H 199 HIS H 205 -1 O ASN H 204 N THR H 156 SHEET 3 AA6 3 THR H 210 VAL H 216 -1 O LYS H 214 N CYS H 201 SHEET 1 AA7 3 LEU L 4 SER L 7 0 SHEET 2 AA7 3 ALA L 19 VAL L 29 -1 O ARG L 24 N THR L 5 SHEET 3 AA7 3 PHE L 63 ILE L 76 -1 O ILE L 76 N ALA L 19 SHEET 1 AA8 6 THR L 10 LEU L 13 0 SHEET 2 AA8 6 THR L 103 ILE L 107 1 O LYS L 104 N LEU L 11 SHEET 3 AA8 6 VAL L 86 GLN L 91 -1 N TYR L 87 O THR L 103 SHEET 4 AA8 6 LEU L 34 GLN L 39 -1 N ALA L 35 O GLN L 90 SHEET 5 AA8 6 ARG L 46 TYR L 50 -1 O LEU L 48 N TRP L 36 SHEET 6 AA8 6 SER L 54 ARG L 55 -1 O SER L 54 N TYR L 50 SHEET 1 AA9 4 SER L 115 PHE L 119 0 SHEET 2 AA9 4 THR L 130 PHE L 140 -1 O LEU L 136 N PHE L 117 SHEET 3 AA9 4 TYR L 174 SER L 183 -1 O LEU L 176 N LEU L 137 SHEET 4 AA9 4 SER L 160 VAL L 164 -1 N GLN L 161 O THR L 179 SHEET 1 AB1 3 LYS L 146 VAL L 151 0 SHEET 2 AB1 3 VAL L 192 THR L 198 -1 O GLU L 196 N GLN L 148 SHEET 3 AB1 3 VAL L 206 ASN L 211 -1 O PHE L 210 N TYR L 193 SSBOND 1 CYS H 22 CYS H 96 1555 1555 2.05 SSBOND 2 CYS H 145 CYS H 201 1555 1555 1.97 SSBOND 3 CYS L 23 CYS L 89 1555 1555 2.06 SSBOND 4 CYS L 135 CYS L 195 1555 1555 2.05 CISPEP 1 PHE H 151 PRO H 152 0 -0.96 CISPEP 2 GLU H 153 PRO H 154 0 -4.36 CISPEP 3 SER L 7 PRO L 8 0 -7.90 CISPEP 4 TYR L 141 PRO L 142 0 1.38 SITE 1 AC1 3 ARG H 16 SER H 17 LYS H 211 SITE 1 AC2 5 ARG H 87 ALA H 88 GLU H 89 HOH H 416 SITE 2 AC2 5 ARG L 24 SITE 1 AC3 4 PHE H 27 THR H 28 TYR H 32 HOH H 418 SITE 1 AC4 4 PRO L 60 ASP L 61 ARG L 62 ARG L 78 CRYST1 119.614 119.614 82.597 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008360 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008360 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012107 0.00000