HEADER TRANSFERASE 28-JAN-19 6JCA TITLE CRYSTAL STRUCTURE OF AMINOTRANSFERASE CRMG FROM ACTINOALLOTEICHUS SP. TITLE 2 WH1-2216-6 IN I222 SPACE GROUP COMPND MOL_ID: 1; COMPND 2 MOLECULE: CRMG; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACTINOALLOTEICHUS SP. WH1-2216-6; SOURCE 3 ORGANISM_TAXID: 1074250; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS AMINOTRANSFERASE, CRMG, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.XU,J.LIU REVDAT 3 22-NOV-23 6JCA 1 REMARK REVDAT 2 16-SEP-20 6JCA 1 JRNL REVDAT 1 05-FEB-20 6JCA 0 JRNL AUTH J.XU,X.TANG,Y.ZHU,Z.YU,K.SU,Y.ZHANG,Y.DONG,W.ZHU,C.ZHANG, JRNL AUTH 2 R.WU,J.LIU JRNL TITL STRUCTURAL STUDIES REVEAL FLEXIBLE ROOF OF ACTIVE SITE JRNL TITL 2 RESPONSIBLE FOR OMEGA-TRANSAMINASE CRMG OVERCOMING JRNL TITL 3 BY-PRODUCT INHIBITION. JRNL REF COMMUN BIOL V. 3 455 2020 JRNL REFN ESSN 2399-3642 JRNL PMID 32814814 JRNL DOI 10.1038/S42003-020-01184-W REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 61786 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 3153 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4526 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.75 REMARK 3 BIN R VALUE (WORKING SET) : 0.2630 REMARK 3 BIN FREE R VALUE SET COUNT : 212 REMARK 3 BIN FREE R VALUE : 0.2740 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7838 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 330 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.92000 REMARK 3 B22 (A**2) : 1.02000 REMARK 3 B33 (A**2) : 0.90000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.212 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.178 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.142 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.654 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7986 ; 0.008 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 7542 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10810 ; 1.538 ; 1.640 REMARK 3 BOND ANGLES OTHERS (DEGREES): 17351 ; 1.307 ; 1.576 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1014 ; 6.445 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 467 ;30.486 ;20.385 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1327 ;15.728 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 89 ;18.967 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1037 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 9124 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1783 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 6 523 B 6 523 14919 0.120 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 SF FILE CONTAINS FRIEDEL PAIRS UNDER I/F_MINUS AND I/F_PLUS REMARK 3 COLUMNS. REMARK 3 REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REMARK 3 REFINED INDIVIDUALLY REMARK 4 REMARK 4 6JCA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1300010830. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9785 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.3 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64955 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 62.610 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.10200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.74600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5DDS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG5000 MME, 100MM TRIS PH 8.0 AND REMARK 280 200MM LITHIUM SULFATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 57.54500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 62.61000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 77.69000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 57.54500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 62.61000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 77.69000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 57.54500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 62.61000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 77.69000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 57.54500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 62.61000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 77.69000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -126.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 HIS A 3 REMARK 465 PRO A 4 REMARK 465 SER A 5 REMARK 465 GLY A 213 REMARK 465 SER A 214 REMARK 465 ILE A 215 REMARK 465 GLN A 216 REMARK 465 LEU A 217 REMARK 465 THR A 218 REMARK 465 GLN A 219 REMARK 465 ASN A 220 REMARK 465 GLU A 221 REMARK 465 PRO A 222 REMARK 465 TRP A 223 REMARK 465 ARG A 224 REMARK 465 THR A 225 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 HIS B 3 REMARK 465 PRO B 4 REMARK 465 SER B 5 REMARK 465 LEU B 171 REMARK 465 VAL B 172 REMARK 465 GLY B 173 REMARK 465 ILE B 370 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 90 NE - CZ - NH1 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG B 406 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG B 469 NE - CZ - NH1 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG B 469 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 211 90.52 -69.07 REMARK 500 LYS A 263 -90.98 60.38 REMARK 500 PRO A 274 92.67 -69.00 REMARK 500 MET A 290 34.95 74.36 REMARK 500 ALA A 343 -64.50 -155.54 REMARK 500 ALA A 345 -21.54 86.19 REMARK 500 HIS A 421 35.49 -141.23 REMARK 500 SER A 482 45.16 37.68 REMARK 500 ALA B 11 145.41 -173.92 REMARK 500 THR B 159 -126.41 -161.44 REMARK 500 THR B 166 38.39 -69.23 REMARK 500 LYS B 263 -97.67 61.87 REMARK 500 ALA B 343 -62.93 -156.22 REMARK 500 ALA B 345 -21.97 86.48 REMARK 500 SER B 373 124.98 92.22 REMARK 500 HIS B 421 33.36 -141.29 REMARK 500 SER B 482 46.89 38.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 160 THR A 161 -148.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 604 DBREF 6JCA A 1 523 UNP H8Y6N2 H8Y6N2_9PSEU 1 523 DBREF 6JCA B 1 523 UNP H8Y6N2 H8Y6N2_9PSEU 1 523 SEQRES 1 A 523 MET THR HIS PRO SER GLY GLU PRO VAL TYR ALA ASP ALA SEQRES 2 A 523 VAL LEU ASN GLY TRP LEU THR SER MET GLY LEU GLY VAL SEQRES 3 A 523 GLU TYR VAL ARG ALA GLU GLY ASN THR VAL TYR TYR LEU SEQRES 4 A 523 ASP ASP GLU GLY ARG GLU VAL PRO VAL LEU ASP HIS ALA SEQRES 5 A 523 CYS GLY PHE GLY SER LEU ILE PHE GLY HIS ASN HIS PRO SEQRES 6 A 523 GLU ILE ILE ALA HIS ALA LYS ALA ALA LEU ASP ALA GLY SEQRES 7 A 523 THR VAL VAL HIS ALA GLN LEU SER ARG GLN PRO ARG ALA SEQRES 8 A 523 ASN GLN ILE SER ARG ILE LEU ASN ASP ILE MET ARG ARG SEQRES 9 A 523 GLU THR GLY ARG ASP ASP ARG TYR ASN ALA ILE PHE ALA SEQRES 10 A 523 ASN SER GLY ALA GLU ALA ASN GLU ILE CYS MET LYS HIS SEQRES 11 A 523 ALA GLU LEU GLU ARG GLN GLU ARG ILE THR ALA LEU PHE SEQRES 12 A 523 ALA GLU ILE ASP ALA GLU LEU ASP THR ALA ARG GLU ALA SEQRES 13 A 523 LEU THR THR GLY THR ALA THR LEU ASP THR ALA SER LEU SEQRES 14 A 523 PRO LEU VAL GLY GLY GLY ALA GLY ASP VAL ASP GLY VAL SEQRES 15 A 523 ILE ALA ASP ILE HIS ARG HIS ASN ASP GLU ARG ARG ALA SEQRES 16 A 523 GLU ARG PRO LEU PHE LEU THR LEU ASP GLY SER PHE HIS SEQRES 17 A 523 GLY LYS LEU VAL GLY SER ILE GLN LEU THR GLN ASN GLU SEQRES 18 A 523 PRO TRP ARG THR PRO PHE THR ALA LEU SER SER PRO ALA SEQRES 19 A 523 ARG PHE LEU PRO ALA ASP GLU PRO GLU LEU ILE GLY LYS SEQRES 20 A 523 ILE VAL GLU ASP GLU ARG ARG SER VAL LEU THR LEU SER SEQRES 21 A 523 LEU ASP LYS ASP THR VAL ARG VAL VAL GLU ARG ASP PHE SEQRES 22 A 523 PRO VAL VAL ALA ALA ILE PHE VAL GLU PRO VAL ARG GLY SEQRES 23 A 523 GLY SER GLY MET LYS THR VAL THR PRO GLU LEU ALA GLU SEQRES 24 A 523 GLU LEU HIS ARG LEU ARG ASP THR LEU GLY CYS PRO LEU SEQRES 25 A 523 VAL VAL ASP GLU VAL GLN THR GLY ILE GLY ARG THR GLY SEQRES 26 A 523 ALA PHE PHE GLY SER ALA LEU LEU GLY ILE ARG GLY ASP SEQRES 27 A 523 TYR TYR THR LEU ALA LYS ALA ILE GLY GLY GLY ILE VAL SEQRES 28 A 523 LYS ASN SER VAL ALA LEU ILE ARG GLN ASP ARG PHE LEU SEQRES 29 A 523 PRO ALA MET GLU VAL ILE HIS SER SER THR PHE ALA LYS SEQRES 30 A 523 ASP GLY LEU SER ALA SER ILE ALA LEU LYS VAL LEU GLU SEQRES 31 A 523 MET VAL GLU ALA ASP GLY GLY ARG VAL TYR GLN ARG VAL SEQRES 32 A 523 ARG GLU ARG GLY GLN ARG LEU GLU ALA MET LEU GLU SER SEQRES 33 A 523 VAL ARG ALA ASP HIS SER ASP VAL VAL SER ALA VAL TRP SEQRES 34 A 523 GLY THR GLY LEU MET LEU ALA LEU GLU LEU ARG ASP GLN SEQRES 35 A 523 SER ASN ALA THR SER GLN ALA ILE ARG GLU LYS ALA ALA SEQRES 36 A 523 HIS GLY PHE LEU GLY TYR VAL LEU ALA GLY PHE LEU LEU SEQRES 37 A 523 ARG GLU HIS HIS ILE ARG VAL LEU PRO ALA GLY PRO ARG SEQRES 38 A 523 SER GLY PHE LEU ARG PHE SER PRO SER LEU TYR ILE THR SEQRES 39 A 523 ASP GLU GLU ILE ASP ARG THR GLU THR ALA LEU ARG SER SEQRES 40 A 523 LEU PHE THR ALA LEU ARG ASP GLN ASP GLY ASP ARG LEU SEQRES 41 A 523 VAL LEU SER SEQRES 1 B 523 MET THR HIS PRO SER GLY GLU PRO VAL TYR ALA ASP ALA SEQRES 2 B 523 VAL LEU ASN GLY TRP LEU THR SER MET GLY LEU GLY VAL SEQRES 3 B 523 GLU TYR VAL ARG ALA GLU GLY ASN THR VAL TYR TYR LEU SEQRES 4 B 523 ASP ASP GLU GLY ARG GLU VAL PRO VAL LEU ASP HIS ALA SEQRES 5 B 523 CYS GLY PHE GLY SER LEU ILE PHE GLY HIS ASN HIS PRO SEQRES 6 B 523 GLU ILE ILE ALA HIS ALA LYS ALA ALA LEU ASP ALA GLY SEQRES 7 B 523 THR VAL VAL HIS ALA GLN LEU SER ARG GLN PRO ARG ALA SEQRES 8 B 523 ASN GLN ILE SER ARG ILE LEU ASN ASP ILE MET ARG ARG SEQRES 9 B 523 GLU THR GLY ARG ASP ASP ARG TYR ASN ALA ILE PHE ALA SEQRES 10 B 523 ASN SER GLY ALA GLU ALA ASN GLU ILE CYS MET LYS HIS SEQRES 11 B 523 ALA GLU LEU GLU ARG GLN GLU ARG ILE THR ALA LEU PHE SEQRES 12 B 523 ALA GLU ILE ASP ALA GLU LEU ASP THR ALA ARG GLU ALA SEQRES 13 B 523 LEU THR THR GLY THR ALA THR LEU ASP THR ALA SER LEU SEQRES 14 B 523 PRO LEU VAL GLY GLY GLY ALA GLY ASP VAL ASP GLY VAL SEQRES 15 B 523 ILE ALA ASP ILE HIS ARG HIS ASN ASP GLU ARG ARG ALA SEQRES 16 B 523 GLU ARG PRO LEU PHE LEU THR LEU ASP GLY SER PHE HIS SEQRES 17 B 523 GLY LYS LEU VAL GLY SER ILE GLN LEU THR GLN ASN GLU SEQRES 18 B 523 PRO TRP ARG THR PRO PHE THR ALA LEU SER SER PRO ALA SEQRES 19 B 523 ARG PHE LEU PRO ALA ASP GLU PRO GLU LEU ILE GLY LYS SEQRES 20 B 523 ILE VAL GLU ASP GLU ARG ARG SER VAL LEU THR LEU SER SEQRES 21 B 523 LEU ASP LYS ASP THR VAL ARG VAL VAL GLU ARG ASP PHE SEQRES 22 B 523 PRO VAL VAL ALA ALA ILE PHE VAL GLU PRO VAL ARG GLY SEQRES 23 B 523 GLY SER GLY MET LYS THR VAL THR PRO GLU LEU ALA GLU SEQRES 24 B 523 GLU LEU HIS ARG LEU ARG ASP THR LEU GLY CYS PRO LEU SEQRES 25 B 523 VAL VAL ASP GLU VAL GLN THR GLY ILE GLY ARG THR GLY SEQRES 26 B 523 ALA PHE PHE GLY SER ALA LEU LEU GLY ILE ARG GLY ASP SEQRES 27 B 523 TYR TYR THR LEU ALA LYS ALA ILE GLY GLY GLY ILE VAL SEQRES 28 B 523 LYS ASN SER VAL ALA LEU ILE ARG GLN ASP ARG PHE LEU SEQRES 29 B 523 PRO ALA MET GLU VAL ILE HIS SER SER THR PHE ALA LYS SEQRES 30 B 523 ASP GLY LEU SER ALA SER ILE ALA LEU LYS VAL LEU GLU SEQRES 31 B 523 MET VAL GLU ALA ASP GLY GLY ARG VAL TYR GLN ARG VAL SEQRES 32 B 523 ARG GLU ARG GLY GLN ARG LEU GLU ALA MET LEU GLU SER SEQRES 33 B 523 VAL ARG ALA ASP HIS SER ASP VAL VAL SER ALA VAL TRP SEQRES 34 B 523 GLY THR GLY LEU MET LEU ALA LEU GLU LEU ARG ASP GLN SEQRES 35 B 523 SER ASN ALA THR SER GLN ALA ILE ARG GLU LYS ALA ALA SEQRES 36 B 523 HIS GLY PHE LEU GLY TYR VAL LEU ALA GLY PHE LEU LEU SEQRES 37 B 523 ARG GLU HIS HIS ILE ARG VAL LEU PRO ALA GLY PRO ARG SEQRES 38 B 523 SER GLY PHE LEU ARG PHE SER PRO SER LEU TYR ILE THR SEQRES 39 B 523 ASP GLU GLU ILE ASP ARG THR GLU THR ALA LEU ARG SER SEQRES 40 B 523 LEU PHE THR ALA LEU ARG ASP GLN ASP GLY ASP ARG LEU SEQRES 41 B 523 VAL LEU SER HET GOL A 601 6 HET CL A 602 1 HET CL A 603 1 HET CL A 604 1 HET SO4 B 601 5 HET SO4 B 602 5 HET GOL B 603 6 HET CL B 604 1 HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETNAM SO4 SULFATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 2(C3 H8 O3) FORMUL 4 CL 4(CL 1-) FORMUL 7 SO4 2(O4 S 2-) FORMUL 11 HOH *330(H2 O) HELIX 1 AA1 ASP A 12 GLY A 23 1 12 HELIX 2 AA2 HIS A 64 ALA A 77 1 14 HELIX 3 AA3 GLN A 88 GLY A 107 1 20 HELIX 4 AA4 SER A 119 THR A 158 1 40 HELIX 5 AA5 THR A 166 VAL A 172 5 7 HELIX 6 AA6 ASP A 178 GLU A 196 1 19 HELIX 7 AA7 PHE A 227 SER A 231 5 5 HELIX 8 AA8 GLU A 241 ASP A 251 1 11 HELIX 9 AA9 ARG A 285 GLY A 289 5 5 HELIX 10 AB1 THR A 294 GLY A 309 1 16 HELIX 11 AB2 PHE A 328 GLY A 334 1 7 HELIX 12 AB3 LEU A 364 ILE A 370 5 7 HELIX 13 AB4 ASP A 378 HIS A 421 1 44 HELIX 14 AB5 SER A 447 HIS A 456 1 10 HELIX 15 AB6 PHE A 458 HIS A 472 1 15 HELIX 16 AB7 GLY A 479 SER A 482 5 4 HELIX 17 AB8 THR A 494 ASP A 514 1 21 HELIX 18 AB9 ASP A 516 VAL A 521 1 6 HELIX 19 AC1 ASP B 12 GLY B 23 1 12 HELIX 20 AC2 CYS B 53 SER B 57 5 5 HELIX 21 AC3 HIS B 64 ALA B 77 1 14 HELIX 22 AC4 GLN B 88 GLY B 107 1 20 HELIX 23 AC5 SER B 119 THR B 158 1 40 HELIX 24 AC6 ASP B 178 GLU B 196 1 19 HELIX 25 AC7 GLY B 205 VAL B 212 1 8 HELIX 26 AC8 PHE B 227 SER B 231 5 5 HELIX 27 AC9 GLU B 241 ASP B 251 1 11 HELIX 28 AD1 ARG B 285 GLY B 289 5 5 HELIX 29 AD2 THR B 294 GLY B 309 1 16 HELIX 30 AD3 PHE B 328 GLY B 334 1 7 HELIX 31 AD4 LEU B 364 VAL B 369 5 6 HELIX 32 AD5 ASP B 378 HIS B 421 1 44 HELIX 33 AD6 SER B 447 HIS B 456 1 10 HELIX 34 AD7 PHE B 458 HIS B 472 1 15 HELIX 35 AD8 GLY B 479 SER B 482 5 4 HELIX 36 AD9 THR B 494 ASP B 514 1 21 HELIX 37 AE1 ASP B 516 VAL B 521 1 6 SHEET 1 AA1 4 ARG A 30 GLU A 32 0 SHEET 2 AA1 4 THR A 35 LEU A 39 -1 O TYR A 37 N ARG A 30 SHEET 3 AA1 4 GLU A 45 ASP A 50 -1 O VAL A 46 N TYR A 38 SHEET 4 AA1 4 ILE A 473 ARG A 474 1 O ARG A 474 N LEU A 49 SHEET 1 AA2 7 TYR A 112 ALA A 117 0 SHEET 2 AA2 7 SER A 354 ARG A 359 -1 O ILE A 358 N ASN A 113 SHEET 3 AA2 7 TYR A 339 LEU A 342 -1 N TYR A 340 O LEU A 357 SHEET 4 AA2 7 LEU A 312 ASP A 315 1 N VAL A 314 O TYR A 339 SHEET 5 AA2 7 VAL A 276 VAL A 281 1 N ILE A 279 O VAL A 313 SHEET 6 AA2 7 LEU A 199 LEU A 203 1 N LEU A 201 O PHE A 280 SHEET 7 AA2 7 ALA A 234 LEU A 237 1 O LEU A 237 N THR A 202 SHEET 1 AA3 3 THR A 163 LEU A 164 0 SHEET 2 AA3 3 THR A 265 ASP A 272 1 O VAL A 266 N THR A 163 SHEET 3 AA3 3 SER A 255 ASP A 262 -1 N ASP A 262 O THR A 265 SHEET 1 AA4 4 VAL A 425 THR A 431 0 SHEET 2 AA4 4 MET A 434 LEU A 439 -1 O GLU A 438 N ALA A 427 SHEET 3 AA4 4 PHE A 484 PHE A 487 -1 O PHE A 487 N LEU A 435 SHEET 4 AA4 4 PRO A 477 ALA A 478 -1 N ALA A 478 O PHE A 484 SHEET 1 AA5 4 TYR B 28 GLU B 32 0 SHEET 2 AA5 4 THR B 35 LEU B 39 -1 O TYR B 37 N VAL B 29 SHEET 3 AA5 4 GLU B 45 ASP B 50 -1 O VAL B 46 N TYR B 38 SHEET 4 AA5 4 ILE B 473 ARG B 474 1 O ARG B 474 N LEU B 49 SHEET 1 AA6 7 TYR B 112 ALA B 117 0 SHEET 2 AA6 7 SER B 354 ARG B 359 -1 O ILE B 358 N ASN B 113 SHEET 3 AA6 7 TYR B 339 LEU B 342 -1 N TYR B 340 O LEU B 357 SHEET 4 AA6 7 LEU B 312 ASP B 315 1 N VAL B 314 O TYR B 339 SHEET 5 AA6 7 VAL B 276 VAL B 281 1 N ILE B 279 O VAL B 313 SHEET 6 AA6 7 LEU B 199 THR B 202 1 N LEU B 201 O PHE B 280 SHEET 7 AA6 7 ALA B 234 PHE B 236 1 O ARG B 235 N PHE B 200 SHEET 1 AA7 3 ALA B 162 THR B 163 0 SHEET 2 AA7 3 THR B 265 ASP B 272 1 O VAL B 266 N ALA B 162 SHEET 3 AA7 3 SER B 255 ASP B 262 -1 N ASP B 262 O THR B 265 SHEET 1 AA8 4 VAL B 425 THR B 431 0 SHEET 2 AA8 4 MET B 434 LEU B 439 -1 O GLU B 438 N ALA B 427 SHEET 3 AA8 4 PHE B 484 PHE B 487 -1 O PHE B 487 N LEU B 435 SHEET 4 AA8 4 PRO B 477 ALA B 478 -1 N ALA B 478 O PHE B 484 SITE 1 AC1 6 GLY A 246 VAL A 249 GLU A 250 ARG A 253 SITE 2 AC1 6 ARG A 303 THR A 307 SITE 1 AC2 5 ALA A 345 GLY A 347 GLY A 348 GLY A 349 SITE 2 AC2 5 HOH A 826 SITE 1 AC3 2 HOH A 738 HOH B 852 SITE 1 AC4 10 THR A 374 HOH A 767 SER B 119 GLY B 120 SITE 2 AC4 10 ALA B 121 LYS B 210 GLN B 318 HOH B 703 SITE 3 AC4 10 HOH B 717 HOH B 824 SITE 1 AC5 6 SER A 119 GLY A 120 SER B 373 THR B 374 SITE 2 AC5 6 PHE B 375 HOH B 753 SITE 1 AC6 5 ARG B 193 GLU B 196 ARG B 197 PRO B 233 SITE 2 AC6 5 HOH B 755 SITE 1 AC7 4 ALA B 345 GLY B 347 GLY B 348 GLY B 349 CRYST1 115.090 125.220 155.380 90.00 90.00 90.00 I 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008689 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007986 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006436 0.00000