HEADER TRANSFERASE 29-JAN-19 6JCN TITLE YEAST DEHYDRODOLICHYL DIPHOSPHATE SYNTHASE COMPLEX SUBUNIT NUS1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEHYDRODOLICHYL DIPHOSPHATE SYNTHASE COMPLEX SUBUNIT NUS1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: NUCLEAR UNDECAPRENYL PYROPHOSPHATE SYNTHASE 1; COMPND 5 EC: 2.5.1.87; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 3 S288C); SOURCE 4 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 5 ORGANISM_TAXID: 559292; SOURCE 6 STRAIN: ATCC 204508 / S288C; SOURCE 7 GENE: NUS1, YDL193W, D1239; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DEHYDRODOLICHYL DIPHOSPHATE SYNTHESIS, ROSSMANN-LIKE FOLD, BUTTERFLY, KEYWDS 2 HETERODIMER, YEAST RER2, HUMAN NGBR, CIS-PRENYL TRANSFERASE, KEYWDS 3 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR T.-P.KO,J.MA,W.LIU,C.-C.CHEN,R.-T.GUO REVDAT 4 22-NOV-23 6JCN 1 REMARK REVDAT 3 10-JUL-19 6JCN 1 JRNL REVDAT 2 26-JUN-19 6JCN 1 JRNL REVDAT 1 19-JUN-19 6JCN 0 JRNL AUTH J.MA,T.P.KO,X.YU,L.ZHANG,L.MA,C.ZHAI,R.T.GUO,W.LIU,H.LI, JRNL AUTH 2 C.C.CHEN JRNL TITL STRUCTURAL INSIGHTS TO HETERODIMERIC CIS-PRENYLTRANSFERASES JRNL TITL 2 THROUGH YEAST DEHYDRODOLICHYL DIPHOSPHATE SYNTHASE SUBUNIT JRNL TITL 3 NUS1. JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 515 621 2019 JRNL REFN ESSN 1090-2104 JRNL PMID 31178134 JRNL DOI 10.1016/J.BBRC.2019.05.135 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.84 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 42840 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.154 REMARK 3 R VALUE (WORKING SET) : 0.152 REMARK 3 FREE R VALUE : 0.180 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.670 REMARK 3 FREE R VALUE TEST SET COUNT : 1999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.8385 - 4.8049 1.00 3130 154 0.1498 0.1664 REMARK 3 2 4.8049 - 3.8182 1.00 3014 147 0.1159 0.1232 REMARK 3 3 3.8182 - 3.3369 1.00 2969 145 0.1333 0.1710 REMARK 3 4 3.3369 - 3.0324 1.00 2966 145 0.1553 0.1839 REMARK 3 5 3.0324 - 2.8153 1.00 2929 144 0.1710 0.2071 REMARK 3 6 2.8153 - 2.6495 1.00 2920 143 0.1587 0.1963 REMARK 3 7 2.6495 - 2.5170 1.00 2921 143 0.1628 0.1989 REMARK 3 8 2.5170 - 2.4075 1.00 2931 143 0.1682 0.2158 REMARK 3 9 2.4075 - 2.3149 1.00 2911 142 0.1664 0.2089 REMARK 3 10 2.3149 - 2.2351 1.00 2908 142 0.1713 0.2097 REMARK 3 11 2.2351 - 2.1652 1.00 2913 143 0.1782 0.2448 REMARK 3 12 2.1652 - 2.1034 0.99 2874 141 0.2048 0.2615 REMARK 3 13 2.1034 - 2.0480 0.98 2818 138 0.2256 0.2491 REMARK 3 14 2.0480 - 1.9981 0.90 2637 129 0.2590 0.2665 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.330 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3407 REMARK 3 ANGLE : 0.937 4620 REMARK 3 CHIRALITY : 0.060 515 REMARK 3 PLANARITY : 0.007 586 REMARK 3 DIHEDRAL : 13.737 2042 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 151 THROUGH 191 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.9190 35.8611 88.2618 REMARK 3 T TENSOR REMARK 3 T11: 0.3905 T22: 0.2985 REMARK 3 T33: 0.2713 T12: -0.0389 REMARK 3 T13: 0.0030 T23: -0.0317 REMARK 3 L TENSOR REMARK 3 L11: 0.4750 L22: 1.6918 REMARK 3 L33: 2.1034 L12: -0.0215 REMARK 3 L13: 1.1841 L23: 0.6466 REMARK 3 S TENSOR REMARK 3 S11: 0.0371 S12: -0.2315 S13: 0.1665 REMARK 3 S21: 0.3556 S22: -0.1314 S23: 0.0007 REMARK 3 S31: -0.1205 S32: -0.2470 S33: -0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 192 THROUGH 248 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.8625 43.5017 80.4210 REMARK 3 T TENSOR REMARK 3 T11: 0.3678 T22: 0.2586 REMARK 3 T33: 0.2768 T12: 0.0289 REMARK 3 T13: -0.0397 T23: -0.0197 REMARK 3 L TENSOR REMARK 3 L11: 1.7816 L22: 2.3403 REMARK 3 L33: 2.3834 L12: 0.4992 REMARK 3 L13: 0.6646 L23: 0.1224 REMARK 3 S TENSOR REMARK 3 S11: -0.0674 S12: 0.0633 S13: 0.1428 REMARK 3 S21: -0.0857 S22: -0.1206 S23: 0.0887 REMARK 3 S31: -0.4580 S32: -0.3274 S33: -0.0265 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 262 THROUGH 317 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.3997 32.1757 65.6382 REMARK 3 T TENSOR REMARK 3 T11: 0.3219 T22: 0.3094 REMARK 3 T33: 0.3378 T12: -0.0170 REMARK 3 T13: 0.0369 T23: 0.0245 REMARK 3 L TENSOR REMARK 3 L11: 1.5681 L22: 0.6626 REMARK 3 L33: 2.3994 L12: -2.1042 REMARK 3 L13: -1.1483 L23: 1.3527 REMARK 3 S TENSOR REMARK 3 S11: 0.2710 S12: 0.0944 S13: 0.3039 REMARK 3 S21: -0.2571 S22: -0.1420 S23: -0.1587 REMARK 3 S31: -0.5219 S32: 0.1211 S33: 0.0355 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 318 THROUGH 370 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.7450 28.4439 89.1880 REMARK 3 T TENSOR REMARK 3 T11: 0.3775 T22: 0.2759 REMARK 3 T33: 0.2795 T12: -0.0252 REMARK 3 T13: -0.0309 T23: -0.0079 REMARK 3 L TENSOR REMARK 3 L11: 1.2983 L22: 1.8061 REMARK 3 L33: 2.1491 L12: -0.6257 REMARK 3 L13: -1.0736 L23: 0.6191 REMARK 3 S TENSOR REMARK 3 S11: -0.0156 S12: -0.1720 S13: 0.1491 REMARK 3 S21: 0.3387 S22: -0.0278 S23: -0.0443 REMARK 3 S31: 0.2980 S32: 0.2527 S33: -0.0088 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 151 THROUGH 191 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.0849 8.2963 89.5083 REMARK 3 T TENSOR REMARK 3 T11: 0.2618 T22: 0.3513 REMARK 3 T33: 0.3157 T12: -0.0049 REMARK 3 T13: -0.0223 T23: 0.0178 REMARK 3 L TENSOR REMARK 3 L11: 0.9389 L22: 1.9697 REMARK 3 L33: 2.0884 L12: -1.3390 REMARK 3 L13: -0.6921 L23: -0.3113 REMARK 3 S TENSOR REMARK 3 S11: -0.2863 S12: -0.1294 S13: 0.1088 REMARK 3 S21: 0.1204 S22: 0.1133 S23: -0.1287 REMARK 3 S31: 0.2839 S32: 0.4533 S33: -0.0013 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 192 THROUGH 248 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.7810 0.8873 82.0740 REMARK 3 T TENSOR REMARK 3 T11: 0.2883 T22: 0.3764 REMARK 3 T33: 0.2908 T12: 0.0943 REMARK 3 T13: 0.0413 T23: 0.0535 REMARK 3 L TENSOR REMARK 3 L11: 1.7820 L22: 2.7038 REMARK 3 L33: 2.1983 L12: -0.0978 REMARK 3 L13: -0.4041 L23: 0.5171 REMARK 3 S TENSOR REMARK 3 S11: -0.1159 S12: 0.0801 S13: -0.1036 REMARK 3 S21: -0.1399 S22: -0.0841 S23: -0.1753 REMARK 3 S31: 0.4798 S32: 0.5584 S33: -0.0970 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 262 THROUGH 317 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.0569 11.2804 65.8712 REMARK 3 T TENSOR REMARK 3 T11: 0.2293 T22: 0.2805 REMARK 3 T33: 0.3082 T12: 0.0248 REMARK 3 T13: -0.0494 T23: -0.0327 REMARK 3 L TENSOR REMARK 3 L11: 0.9600 L22: 0.7683 REMARK 3 L33: 3.3152 L12: -1.1552 REMARK 3 L13: 0.6553 L23: -0.5818 REMARK 3 S TENSOR REMARK 3 S11: 0.1852 S12: 0.1080 S13: -0.2751 REMARK 3 S21: -0.1834 S22: -0.2402 S23: 0.1753 REMARK 3 S31: 0.3237 S32: 0.1442 S33: 0.0082 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 318 THROUGH 370 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.4441 14.6976 89.4476 REMARK 3 T TENSOR REMARK 3 T11: 0.3121 T22: 0.3170 REMARK 3 T33: 0.3184 T12: 0.0123 REMARK 3 T13: 0.0245 T23: -0.0110 REMARK 3 L TENSOR REMARK 3 L11: 1.0652 L22: 2.1342 REMARK 3 L33: 2.2231 L12: -0.5792 REMARK 3 L13: 1.1346 L23: -0.7142 REMARK 3 S TENSOR REMARK 3 S11: -0.1610 S12: -0.2616 S13: -0.0461 REMARK 3 S21: 0.3542 S22: 0.0461 S23: 0.1349 REMARK 3 S31: -0.3759 S32: -0.4117 S33: -0.0032 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6JCN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1300010853. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-AUG-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL15A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42913 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 18.80 REMARK 200 R MERGE (I) : 0.11500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.90 REMARK 200 R MERGE FOR SHELL (I) : 0.98500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 5HXQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M (NH4)2SO4, 0.1M SODIUM CACODYLATE REMARK 280 PH 6.5, 20% PEG 8000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.66400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.91750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.33550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.91750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.66400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.33550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -56.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 142 REMARK 465 ALA A 143 REMARK 465 GLY A 144 REMARK 465 ALA A 145 REMARK 465 GLY A 146 REMARK 465 ALA A 147 REMARK 465 PRO A 148 REMARK 465 LEU A 149 REMARK 465 LYS A 150 REMARK 465 THR A 249 REMARK 465 GLU A 250 REMARK 465 THR A 251 REMARK 465 ASP A 252 REMARK 465 VAL A 253 REMARK 465 GLY A 254 REMARK 465 ASN A 255 REMARK 465 GLU A 256 REMARK 465 ILE A 257 REMARK 465 GLU A 258 REMARK 465 ALA A 259 REMARK 465 ASN A 260 REMARK 465 GLN A 261 REMARK 465 VAL A 371 REMARK 465 ASN A 372 REMARK 465 VAL A 373 REMARK 465 GLY A 374 REMARK 465 LYS A 375 REMARK 465 GLY B 142 REMARK 465 ALA B 143 REMARK 465 GLY B 144 REMARK 465 ALA B 145 REMARK 465 GLY B 146 REMARK 465 ALA B 147 REMARK 465 PRO B 148 REMARK 465 LEU B 149 REMARK 465 LYS B 150 REMARK 465 THR B 249 REMARK 465 GLU B 250 REMARK 465 THR B 251 REMARK 465 ASP B 252 REMARK 465 VAL B 253 REMARK 465 GLY B 254 REMARK 465 ASN B 255 REMARK 465 GLU B 256 REMARK 465 ILE B 257 REMARK 465 GLU B 258 REMARK 465 ALA B 259 REMARK 465 ASN B 260 REMARK 465 GLN B 261 REMARK 465 VAL B 371 REMARK 465 ASN B 372 REMARK 465 VAL B 373 REMARK 465 GLY B 374 REMARK 465 LYS B 375 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN A 314 O HOH A 601 2.05 REMARK 500 O HOH B 768 O HOH B 777 2.08 REMARK 500 O HOH A 715 O HOH A 764 2.10 REMARK 500 OE1 GLU B 353 O HOH B 601 2.12 REMARK 500 O HOH A 731 O HOH A 798 2.12 REMARK 500 O HOH B 792 O HOH B 824 2.14 REMARK 500 O HOH A 772 O HOH A 784 2.14 REMARK 500 OE2 GLU A 311 O HOH A 601 2.15 REMARK 500 O4 SO4 A 500 O HOH A 602 2.17 REMARK 500 O HOH A 626 O HOH A 764 2.17 REMARK 500 OD2 ASP B 302 O HOH B 602 2.17 REMARK 500 O HOH B 685 O HOH B 792 2.18 REMARK 500 OE2 GLU B 213 O HOH B 603 2.18 REMARK 500 NH2 ARG B 155 O HOH B 604 2.19 REMARK 500 O HOH B 608 O HOH B 709 2.19 REMARK 500 O HOH B 641 O HOH B 768 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP B 200 OG SER B 301 4556 2.00 REMARK 500 O HOH A 799 O HOH B 769 4456 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 243 -133.75 53.13 REMARK 500 GLN A 333 53.62 37.20 REMARK 500 ASN A 352 31.61 -140.07 REMARK 500 ASN B 243 -134.98 52.65 REMARK 500 ILE B 247 -61.10 -105.37 REMARK 500 GLN B 333 53.63 38.26 REMARK 500 ASN B 352 30.62 -141.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 350 ASN A 351 -149.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 832 DISTANCE = 7.62 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 500 DBREF 6JCN A 148 375 UNP Q12063 UPPS_YEAST 148 375 DBREF 6JCN B 148 375 UNP Q12063 UPPS_YEAST 148 375 SEQADV 6JCN GLY A 142 UNP Q12063 EXPRESSION TAG SEQADV 6JCN ALA A 143 UNP Q12063 EXPRESSION TAG SEQADV 6JCN GLY A 144 UNP Q12063 EXPRESSION TAG SEQADV 6JCN ALA A 145 UNP Q12063 EXPRESSION TAG SEQADV 6JCN GLY A 146 UNP Q12063 EXPRESSION TAG SEQADV 6JCN ALA A 147 UNP Q12063 EXPRESSION TAG SEQADV 6JCN ALA A 184 UNP Q12063 CYS 184 ENGINEERED MUTATION SEQADV 6JCN ALA A 293 UNP Q12063 CYS 293 ENGINEERED MUTATION SEQADV 6JCN GLY B 142 UNP Q12063 EXPRESSION TAG SEQADV 6JCN ALA B 143 UNP Q12063 EXPRESSION TAG SEQADV 6JCN GLY B 144 UNP Q12063 EXPRESSION TAG SEQADV 6JCN ALA B 145 UNP Q12063 EXPRESSION TAG SEQADV 6JCN GLY B 146 UNP Q12063 EXPRESSION TAG SEQADV 6JCN ALA B 147 UNP Q12063 EXPRESSION TAG SEQADV 6JCN ALA B 184 UNP Q12063 CYS 184 ENGINEERED MUTATION SEQADV 6JCN ALA B 293 UNP Q12063 CYS 293 ENGINEERED MUTATION SEQRES 1 A 234 GLY ALA GLY ALA GLY ALA PRO LEU LYS LYS ILE PRO LYS SEQRES 2 A 234 ARG LEU ALA ALA ILE LEU GLU VAL LYS PRO VAL GLY ASP SEQRES 3 A 234 VAL GLY GLY GLY VAL THR GLY LEU LEU ASN ASP ALA SER SEQRES 4 A 234 GLU ILE VAL ALA TRP THR VAL SER ALA GLY ILE LYS HIS SEQRES 5 A 234 LEU MET LEU TYR ASP TYR ASP GLY ILE LEU GLN ARG ASN SEQRES 6 A 234 VAL PRO GLU LEU ARG MET GLU ILE HIS SER ASN LEU ALA SEQRES 7 A 234 LYS TYR PHE GLY PRO ALA HIS VAL PRO ASN TYR ALA VAL SEQRES 8 A 234 LYS ILE PRO HIS SER ASN LYS ILE PHE TYR ASN LEU ASP SEQRES 9 A 234 GLY ILE GLU THR GLU THR ASP VAL GLY ASN GLU ILE GLU SEQRES 10 A 234 ALA ASN GLN GLU LYS ASP LYS ILE ALA ILE GLU ILE SER SEQRES 11 A 234 LEU LEU SER ASN ARG ASP GLY ARG GLU THR ILE VAL ASP SEQRES 12 A 234 LEU THR LYS THR MET ALA GLU LEU ALA ALA VAL ASN GLU SEQRES 13 A 234 LEU SER VAL SER ASP ILE THR MET ASP LEU VAL ASP SER SEQRES 14 A 234 GLU LEU LYS GLN LEU VAL GLY PRO GLU PRO ASP LEU LEU SEQRES 15 A 234 LEU TYR PHE GLY PRO SER LEU ASP LEU GLN GLY PHE PRO SEQRES 16 A 234 PRO TRP HIS ILE ARG LEU THR GLU PHE TYR TRP GLU LYS SEQRES 17 A 234 ASP ASN ASN GLU VAL ILE TYR SER VAL PHE ILE ARG GLY SEQRES 18 A 234 LEU ARG GLN TYR ALA GLY CYS LYS VAL ASN VAL GLY LYS SEQRES 1 B 234 GLY ALA GLY ALA GLY ALA PRO LEU LYS LYS ILE PRO LYS SEQRES 2 B 234 ARG LEU ALA ALA ILE LEU GLU VAL LYS PRO VAL GLY ASP SEQRES 3 B 234 VAL GLY GLY GLY VAL THR GLY LEU LEU ASN ASP ALA SER SEQRES 4 B 234 GLU ILE VAL ALA TRP THR VAL SER ALA GLY ILE LYS HIS SEQRES 5 B 234 LEU MET LEU TYR ASP TYR ASP GLY ILE LEU GLN ARG ASN SEQRES 6 B 234 VAL PRO GLU LEU ARG MET GLU ILE HIS SER ASN LEU ALA SEQRES 7 B 234 LYS TYR PHE GLY PRO ALA HIS VAL PRO ASN TYR ALA VAL SEQRES 8 B 234 LYS ILE PRO HIS SER ASN LYS ILE PHE TYR ASN LEU ASP SEQRES 9 B 234 GLY ILE GLU THR GLU THR ASP VAL GLY ASN GLU ILE GLU SEQRES 10 B 234 ALA ASN GLN GLU LYS ASP LYS ILE ALA ILE GLU ILE SER SEQRES 11 B 234 LEU LEU SER ASN ARG ASP GLY ARG GLU THR ILE VAL ASP SEQRES 12 B 234 LEU THR LYS THR MET ALA GLU LEU ALA ALA VAL ASN GLU SEQRES 13 B 234 LEU SER VAL SER ASP ILE THR MET ASP LEU VAL ASP SER SEQRES 14 B 234 GLU LEU LYS GLN LEU VAL GLY PRO GLU PRO ASP LEU LEU SEQRES 15 B 234 LEU TYR PHE GLY PRO SER LEU ASP LEU GLN GLY PHE PRO SEQRES 16 B 234 PRO TRP HIS ILE ARG LEU THR GLU PHE TYR TRP GLU LYS SEQRES 17 B 234 ASP ASN ASN GLU VAL ILE TYR SER VAL PHE ILE ARG GLY SEQRES 18 B 234 LEU ARG GLN TYR ALA GLY CYS LYS VAL ASN VAL GLY LYS HET SO4 A 500 5 HET SO4 B 500 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 HOH *461(H2 O) HELIX 1 AA1 GLY A 170 ALA A 189 1 20 HELIX 2 AA2 GLY A 201 ASN A 206 1 6 HELIX 3 AA3 ASN A 206 GLY A 223 1 18 HELIX 4 AA4 PRO A 235 ASN A 238 5 4 HELIX 5 AA5 SER A 274 ASP A 277 5 4 HELIX 6 AA6 GLY A 278 VAL A 295 1 18 HELIX 7 AA7 SER A 299 ILE A 303 5 5 HELIX 8 AA8 THR A 304 VAL A 316 1 13 HELIX 9 AA9 ILE A 355 GLY A 368 1 14 HELIX 10 AB1 GLY B 170 ALA B 189 1 20 HELIX 11 AB2 ASN B 206 GLY B 223 1 18 HELIX 12 AB3 SER B 274 ASP B 277 5 4 HELIX 13 AB4 GLY B 278 VAL B 295 1 18 HELIX 14 AB5 SER B 299 ILE B 303 5 5 HELIX 15 AB6 THR B 304 VAL B 316 1 13 HELIX 16 AB7 ILE B 355 GLY B 368 1 14 SHEET 1 AA1 8 LYS A 239 TYR A 242 0 SHEET 2 AA1 8 TYR A 230 ILE A 234 -1 N ILE A 234 O LYS A 239 SHEET 3 AA1 8 ILE A 268 LEU A 273 1 O ILE A 270 N ALA A 231 SHEET 4 AA1 8 HIS A 193 TYR A 197 1 N LEU A 196 O SER A 271 SHEET 5 AA1 8 ARG A 155 ILE A 159 1 N LEU A 156 O HIS A 193 SHEET 6 AA1 8 LEU A 322 TYR A 325 1 O LEU A 324 N ALA A 157 SHEET 7 AA1 8 GLU A 344 TYR A 346 1 O GLU A 344 N LEU A 323 SHEET 8 AA1 8 LEU B 330 ASP B 331 -1 O LEU B 330 N PHE A 345 SHEET 1 AA2 7 LYS B 239 TYR B 242 0 SHEET 2 AA2 7 TYR B 230 ILE B 234 -1 N ILE B 234 O LYS B 239 SHEET 3 AA2 7 ILE B 268 LEU B 273 1 O ILE B 270 N ALA B 231 SHEET 4 AA2 7 HIS B 193 TYR B 197 1 N LEU B 194 O SER B 271 SHEET 5 AA2 7 ARG B 155 ILE B 159 1 N LEU B 156 O MET B 195 SHEET 6 AA2 7 LEU B 322 TYR B 325 1 O LEU B 324 N ALA B 157 SHEET 7 AA2 7 GLU B 344 TYR B 346 1 O GLU B 344 N LEU B 323 SITE 1 AC1 8 MET A 305 ARG A 341 HOH A 602 HOH A 608 SITE 2 AC1 8 HOH A 686 ASN B 275 HOH B 634 HOH B 675 SITE 1 AC2 12 ASN A 275 ARG A 279 HOH A 669 MET B 305 SITE 2 AC2 12 ARG B 341 HOH B 620 HOH B 629 HOH B 649 SITE 3 AC2 12 HOH B 670 HOH B 719 HOH B 723 HOH B 743 CRYST1 57.328 82.671 131.835 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017443 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012096 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007585 0.00000