HEADER HYDROLASE 31-JAN-19 6JD8 TITLE STRUCTURE OF A PROLINE SPECIFIC MUTANT OF HUMAN CATHEPSIN L COMPND MOL_ID: 1; COMPND 2 MOLECULE: CATHEPSIN L1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CATHEPSIN L,MAJOR EXCRETED PROTEIN,MEP; COMPND 5 EC: 3.4.22.15; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CTSL, CTSL1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEASE, PROLINE-SPECIFIC, ENGINEERED, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR D.CHOUDHURY,S.BISWAS REVDAT 4 13-NOV-24 6JD8 1 REMARK REVDAT 3 29-NOV-23 6JD8 1 REMARK REVDAT 2 19-OCT-22 6JD8 1 JRNL REVDAT 1 05-FEB-20 6JD8 0 JRNL AUTH D.CHOUDHURY,S.BISWAS JRNL TITL STRUCTURE-GUIDED PROTEIN ENGINEERING OF HUMAN CATHEPSIN L JRNL TITL 2 FOR EFFICIENT COLLAGENOLYTIC ACTIVITY. JRNL REF PROTEIN ENG.DES.SEL. V. 34 2021 JRNL REFN ESSN 1741-0134 JRNL PMID 33825882 JRNL DOI 10.1093/PROTEIN/GZAB005 REMARK 2 REMARK 2 RESOLUTION. 1.46 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.46 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.56 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.3 REMARK 3 NUMBER OF REFLECTIONS : 49436 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1996 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 25.5648 - 3.5093 0.97 3704 156 0.1649 0.2271 REMARK 3 2 3.5093 - 2.7865 1.00 3672 155 0.1778 0.2010 REMARK 3 3 2.7865 - 2.4346 1.00 3626 153 0.1942 0.2364 REMARK 3 4 2.4346 - 2.2121 1.00 3589 149 0.1899 0.2323 REMARK 3 5 2.2121 - 2.0537 1.00 3600 152 0.1962 0.2307 REMARK 3 6 2.0537 - 1.9326 1.00 3568 150 0.2033 0.2663 REMARK 3 7 1.9326 - 1.8359 1.00 3552 148 0.2085 0.2329 REMARK 3 8 1.8359 - 1.7560 1.00 3561 151 0.2079 0.2349 REMARK 3 9 1.7560 - 1.6884 1.00 3528 149 0.2155 0.2580 REMARK 3 10 1.6884 - 1.6301 0.99 3546 149 0.2367 0.3160 REMARK 3 11 1.6301 - 1.5792 0.95 3387 143 0.2438 0.3015 REMARK 3 12 1.5792 - 1.5340 0.88 3090 131 0.2617 0.3059 REMARK 3 13 1.5340 - 1.4937 0.77 2735 115 0.2725 0.2878 REMARK 3 14 1.4937 - 1.4572 0.65 2282 95 0.2711 0.3467 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.270 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.22 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2721 REMARK 3 ANGLE : 1.120 3665 REMARK 3 CHIRALITY : 0.184 358 REMARK 3 PLANARITY : 0.006 478 REMARK 3 DIHEDRAL : 17.973 1036 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6JD8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1300010894. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49550 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.457 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.46 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 63.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.38600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1CS8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 31.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, 2-PROPANOL, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.11000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.61950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.79200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.61950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.11000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.79200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -43 REMARK 465 HIS A -42 REMARK 465 HIS A -41 REMARK 465 HIS A -40 REMARK 465 HIS A -39 REMARK 465 HIS A -38 REMARK 465 HIS A -37 REMARK 465 SER A -36 REMARK 465 SER A -35 REMARK 465 GLY A -34 REMARK 465 LEU A -33 REMARK 465 VAL A -32 REMARK 465 PRO A -31 REMARK 465 ARG A -30 REMARK 465 GLY A -29 REMARK 465 SER A -28 REMARK 465 GLY A -27 REMARK 465 MET A -26 REMARK 465 LYS A -25 REMARK 465 GLU A -24 REMARK 465 THR A -23 REMARK 465 ALA A -22 REMARK 465 ALA A -21 REMARK 465 ALA A -20 REMARK 465 LYS A -19 REMARK 465 PHE A -18 REMARK 465 GLU A -17 REMARK 465 ARG A -16 REMARK 465 GLN A -15 REMARK 465 HIS A -14 REMARK 465 MET A -13 REMARK 465 ASP A -12 REMARK 465 SER A -11 REMARK 465 PRO A -10 REMARK 465 ASP A -9 REMARK 465 LEU A -8 REMARK 465 GLY A -7 REMARK 465 THR A -6 REMARK 465 ASP A -5 REMARK 465 ASP A -4 REMARK 465 ASP A -3 REMARK 465 ASP A -2 REMARK 465 LYS A -1 REMARK 465 ASN A 80 REMARK 465 ARG A 81 REMARK 465 SER A 273 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 82 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH12 ARG A 84 O HOH A 501 1.51 REMARK 500 HZ1 LYS A 243 O HOH A 509 1.53 REMARK 500 OE1 GLU A 146 HO EOH A 413 1.58 REMARK 500 O GLY A 77 O4 PGE A 416 2.00 REMARK 500 NH1 ARG A 84 O HOH A 501 2.02 REMARK 500 O HOH A 530 O HOH A 646 2.12 REMARK 500 OD1 ASN A 276 O HOH A 502 2.14 REMARK 500 O HOH A 648 O HOH A 710 2.15 REMARK 500 OE1 GLN A 90 O HOH A 503 2.16 REMARK 500 O HOH A 587 O HOH A 658 2.16 REMARK 500 O GLY A 24 O HOH A 504 2.18 REMARK 500 OE1 GLU A 146 O EOH A 413 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD1 ASN A 20 HE ARG A 301 1455 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 262 CB - CG - CD2 ANGL. DEV. = 10.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 2 90.75 -69.46 REMARK 500 THR A 3 74.68 17.89 REMARK 500 MET A 75 -89.35 -95.57 REMARK 500 MET A 75 -89.40 -95.58 REMARK 500 ASN A 76 123.76 76.97 REMARK 500 LYS A 243 -52.62 -120.61 REMARK 500 GLU A 255 -158.43 -121.75 REMARK 500 SER A 270 -108.48 -108.31 REMARK 500 THR A 271 -122.47 -98.88 REMARK 500 ARG A 301 60.71 -117.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 725 DISTANCE = 6.55 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EOH A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EOH A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EOH A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EOH A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EOH A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EOH A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EOH A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EOH A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EOH A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EOH A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EOH A 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EOH A 413 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 414 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 415 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 416 DBREF 6JD8 A 1 316 UNP P07711 CATL1_HUMAN 18 333 SEQADV 6JD8 MET A -43 UNP P07711 EXPRESSION TAG SEQADV 6JD8 HIS A -42 UNP P07711 EXPRESSION TAG SEQADV 6JD8 HIS A -41 UNP P07711 EXPRESSION TAG SEQADV 6JD8 HIS A -40 UNP P07711 EXPRESSION TAG SEQADV 6JD8 HIS A -39 UNP P07711 EXPRESSION TAG SEQADV 6JD8 HIS A -38 UNP P07711 EXPRESSION TAG SEQADV 6JD8 HIS A -37 UNP P07711 EXPRESSION TAG SEQADV 6JD8 SER A -36 UNP P07711 EXPRESSION TAG SEQADV 6JD8 SER A -35 UNP P07711 EXPRESSION TAG SEQADV 6JD8 GLY A -34 UNP P07711 EXPRESSION TAG SEQADV 6JD8 LEU A -33 UNP P07711 EXPRESSION TAG SEQADV 6JD8 VAL A -32 UNP P07711 EXPRESSION TAG SEQADV 6JD8 PRO A -31 UNP P07711 EXPRESSION TAG SEQADV 6JD8 ARG A -30 UNP P07711 EXPRESSION TAG SEQADV 6JD8 GLY A -29 UNP P07711 EXPRESSION TAG SEQADV 6JD8 SER A -28 UNP P07711 EXPRESSION TAG SEQADV 6JD8 GLY A -27 UNP P07711 EXPRESSION TAG SEQADV 6JD8 MET A -26 UNP P07711 EXPRESSION TAG SEQADV 6JD8 LYS A -25 UNP P07711 EXPRESSION TAG SEQADV 6JD8 GLU A -24 UNP P07711 EXPRESSION TAG SEQADV 6JD8 THR A -23 UNP P07711 EXPRESSION TAG SEQADV 6JD8 ALA A -22 UNP P07711 EXPRESSION TAG SEQADV 6JD8 ALA A -21 UNP P07711 EXPRESSION TAG SEQADV 6JD8 ALA A -20 UNP P07711 EXPRESSION TAG SEQADV 6JD8 LYS A -19 UNP P07711 EXPRESSION TAG SEQADV 6JD8 PHE A -18 UNP P07711 EXPRESSION TAG SEQADV 6JD8 GLU A -17 UNP P07711 EXPRESSION TAG SEQADV 6JD8 ARG A -16 UNP P07711 EXPRESSION TAG SEQADV 6JD8 GLN A -15 UNP P07711 EXPRESSION TAG SEQADV 6JD8 HIS A -14 UNP P07711 EXPRESSION TAG SEQADV 6JD8 MET A -13 UNP P07711 EXPRESSION TAG SEQADV 6JD8 ASP A -12 UNP P07711 EXPRESSION TAG SEQADV 6JD8 SER A -11 UNP P07711 EXPRESSION TAG SEQADV 6JD8 PRO A -10 UNP P07711 EXPRESSION TAG SEQADV 6JD8 ASP A -9 UNP P07711 EXPRESSION TAG SEQADV 6JD8 LEU A -8 UNP P07711 EXPRESSION TAG SEQADV 6JD8 GLY A -7 UNP P07711 EXPRESSION TAG SEQADV 6JD8 THR A -6 UNP P07711 EXPRESSION TAG SEQADV 6JD8 ASP A -5 UNP P07711 EXPRESSION TAG SEQADV 6JD8 ASP A -4 UNP P07711 EXPRESSION TAG SEQADV 6JD8 ASP A -3 UNP P07711 EXPRESSION TAG SEQADV 6JD8 ASP A -2 UNP P07711 EXPRESSION TAG SEQADV 6JD8 LYS A -1 UNP P07711 EXPRESSION TAG SEQADV 6JD8 MET A 0 UNP P07711 EXPRESSION TAG SEQADV 6JD8 SER A 121 UNP P07711 CYS 138 ENGINEERED MUTATION SEQADV 6JD8 TYR A 165 UNP P07711 LEU 182 ENGINEERED MUTATION SEQADV 6JD8 LEU A 257 UNP P07711 MET 274 ENGINEERED MUTATION SEQADV 6JD8 ALA A 260 UNP P07711 GLY 277 ENGINEERED MUTATION SEQADV 6JD8 LEU A 310 UNP P07711 ALA 327 ENGINEERED MUTATION SEQRES 1 A 360 MET HIS HIS HIS HIS HIS HIS SER SER GLY LEU VAL PRO SEQRES 2 A 360 ARG GLY SER GLY MET LYS GLU THR ALA ALA ALA LYS PHE SEQRES 3 A 360 GLU ARG GLN HIS MET ASP SER PRO ASP LEU GLY THR ASP SEQRES 4 A 360 ASP ASP ASP LYS MET THR LEU THR PHE ASP HIS SER LEU SEQRES 5 A 360 GLU ALA GLN TRP THR LYS TRP LYS ALA MET HIS ASN ARG SEQRES 6 A 360 LEU TYR GLY MET ASN GLU GLU GLY TRP ARG ARG ALA VAL SEQRES 7 A 360 TRP GLU LYS ASN MET LYS MET ILE GLU LEU HIS ASN GLN SEQRES 8 A 360 GLU TYR ARG GLU GLY LYS HIS SER PHE THR MET ALA MET SEQRES 9 A 360 ASN ALA PHE GLY ASP MET THR SER GLU GLU PHE ARG GLN SEQRES 10 A 360 VAL MET ASN GLY PHE GLN ASN ARG LYS PRO ARG LYS GLY SEQRES 11 A 360 LYS VAL PHE GLN GLU PRO LEU PHE TYR GLU ALA PRO ARG SEQRES 12 A 360 SER VAL ASP TRP ARG GLU LYS GLY TYR VAL THR PRO VAL SEQRES 13 A 360 LYS ASN GLN GLY GLN CYS GLY SER SER TRP ALA PHE SER SEQRES 14 A 360 ALA THR GLY ALA LEU GLU GLY GLN MET PHE ARG LYS THR SEQRES 15 A 360 GLY ARG LEU ILE SER LEU SER GLU GLN ASN LEU VAL ASP SEQRES 16 A 360 CYS SER GLY PRO GLN GLY ASN GLU GLY CYS ASN GLY GLY SEQRES 17 A 360 TYR MET ASP TYR ALA PHE GLN TYR VAL GLN ASP ASN GLY SEQRES 18 A 360 GLY LEU ASP SER GLU GLU SER TYR PRO TYR GLU ALA THR SEQRES 19 A 360 GLU GLU SER CYS LYS TYR ASN PRO LYS TYR SER VAL ALA SEQRES 20 A 360 ASN ASP THR GLY PHE VAL ASP ILE PRO LYS GLN GLU LYS SEQRES 21 A 360 ALA LEU MET LYS ALA VAL ALA THR VAL GLY PRO ILE SER SEQRES 22 A 360 VAL ALA ILE ASP ALA GLY HIS GLU SER PHE LEU PHE TYR SEQRES 23 A 360 LYS GLU GLY ILE TYR PHE GLU PRO ASP CYS SER SER GLU SEQRES 24 A 360 ASP LEU ASP HIS ALA VAL LEU VAL VAL GLY TYR GLY PHE SEQRES 25 A 360 GLU SER THR GLU SER ASP ASN ASN LYS TYR TRP LEU VAL SEQRES 26 A 360 LYS ASN SER TRP GLY GLU GLU TRP GLY MET GLY GLY TYR SEQRES 27 A 360 VAL LYS MET ALA LYS ASP ARG ARG ASN HIS CYS GLY ILE SEQRES 28 A 360 ALA SER LEU ALA SER TYR PRO THR VAL HET GOL A 401 12 HET EOH A 402 9 HET EOH A 403 9 HET EOH A 404 9 HET EOH A 405 9 HET EOH A 406 9 HET EOH A 407 9 HET EOH A 408 9 HET EOH A 409 9 HET EOH A 410 9 HET EOH A 411 9 HET EOH A 412 9 HET EOH A 413 9 HET PEG A 414 17 HET EDO A 415 10 HET PGE A 416 24 HETNAM GOL GLYCEROL HETNAM EOH ETHANOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM EDO 1,2-ETHANEDIOL HETNAM PGE TRIETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 GOL C3 H8 O3 FORMUL 3 EOH 12(C2 H6 O) FORMUL 15 PEG C4 H10 O3 FORMUL 16 EDO C2 H6 O2 FORMUL 17 PGE C6 H14 O4 FORMUL 18 HOH *225(H2 O) HELIX 1 AA1 ASP A 5 SER A 7 5 3 HELIX 2 AA2 LEU A 8 HIS A 19 1 12 HELIX 3 AA3 GLU A 27 GLU A 51 1 25 HELIX 4 AA4 THR A 67 MET A 75 1 9 HELIX 5 AA5 ARG A 104 GLY A 107 5 4 HELIX 6 AA6 SER A 120 GLY A 139 1 20 HELIX 7 AA7 SER A 145 SER A 153 1 9 HELIX 8 AA8 GLU A 159 GLY A 163 5 5 HELIX 9 AA9 TYR A 165 GLY A 177 1 13 HELIX 10 AB1 ASN A 197 LYS A 199 5 3 HELIX 11 AB2 GLN A 214 GLY A 226 1 13 HELIX 12 AB3 HIS A 236 PHE A 241 1 6 HELIX 13 AB4 ASN A 303 ILE A 307 5 5 SHEET 1 AA1 6 PHE A 56 MET A 58 0 SHEET 2 AA1 6 TYR A 242 TYR A 247 -1 O LYS A 243 N THR A 57 SHEET 3 AA1 6 TYR A 294 ALA A 298 1 O LYS A 296 N TYR A 247 SHEET 4 AA1 6 LYS A 277 LYS A 282 -1 N TRP A 279 O MET A 297 SHEET 5 AA1 6 HIS A 259 PHE A 268 -1 N LEU A 262 O LYS A 282 SHEET 6 AA1 6 VAL A 101 ASP A 102 -1 N VAL A 101 O TYR A 266 SHEET 1 AA2 6 PHE A 56 MET A 58 0 SHEET 2 AA2 6 TYR A 242 TYR A 247 -1 O LYS A 243 N THR A 57 SHEET 3 AA2 6 TYR A 294 ALA A 298 1 O LYS A 296 N TYR A 247 SHEET 4 AA2 6 LYS A 277 LYS A 282 -1 N TRP A 279 O MET A 297 SHEET 5 AA2 6 HIS A 259 PHE A 268 -1 N LEU A 262 O LYS A 282 SHEET 6 AA2 6 ILE A 228 ILE A 232 -1 N ILE A 228 O VAL A 263 SHEET 1 AA3 3 LYS A 87 VAL A 88 0 SHEET 2 AA3 3 PHE A 208 ASP A 210 1 O PHE A 208 N LYS A 87 SHEET 3 AA3 3 SER A 312 PRO A 314 -1 O TYR A 313 N VAL A 209 SHEET 1 AA4 2 LEU A 179 ASP A 180 0 SHEET 2 AA4 2 SER A 201 ALA A 203 -1 O VAL A 202 N LEU A 179 SSBOND 1 CYS A 118 CYS A 161 1555 1555 2.03 SSBOND 2 CYS A 152 CYS A 194 1555 1555 2.04 SSBOND 3 CYS A 252 CYS A 305 1555 1555 2.04 SITE 1 AC1 7 PHE A 135 GLY A 139 ARG A 140 LEU A 141 SITE 2 AC1 7 HOH A 507 HOH A 536 HOH A 601 SITE 1 AC2 3 ASP A 300 ARG A 302 HOH A 524 SITE 1 AC3 7 GLU A 159 ASN A 162 GLY A 163 TYR A 165 SITE 2 AC3 7 SER A 270 THR A 271 HOH A 572 SITE 1 AC4 6 GLU A 51 LYS A 53 LEU A 93 VAL A 202 SITE 2 AC4 6 HOH A 591 HOH A 597 SITE 1 AC5 1 LYS A 87 SITE 1 AC6 4 GLY A 116 GLN A 117 ALA A 189 EDO A 415 SITE 1 AC7 8 GLY A 154 ASN A 158 GLU A 159 GLY A 160 SITE 2 AC7 8 GLU A 191 HOH A 537 HOH A 546 HOH A 586 SITE 1 AC8 3 ASN A 38 SER A 68 GLU A 237 SITE 1 AC9 5 LYS A 87 CYS A 194 TYR A 196 THR A 206 SITE 2 AC9 5 HOH A 532 SITE 1 AD1 3 THR A 1 THR A 3 PHE A 4 SITE 1 AD2 2 GLU A 28 ARG A 32 SITE 1 AD3 4 LYS A 113 SER A 143 GLU A 182 HOH A 559 SITE 1 AD4 6 PHE A 124 GLU A 146 GLU A 182 TYR A 187 SITE 2 AD4 6 HOH A 602 HOH A 692 SITE 1 AD5 5 ASP A 205 THR A 206 HOH A 542 HOH A 547 SITE 2 AD5 5 HOH A 624 SITE 1 AD6 4 TYR A 187 GLN A 214 EOH A 406 HOH A 584 SITE 1 AD7 14 VAL A 74 MET A 75 ASN A 76 GLY A 77 SITE 2 AD7 14 PHE A 78 GLN A 115 GLY A 119 SER A 120 SITE 3 AD7 14 SER A 121 GLY A 163 GLY A 164 ASP A 258 SITE 4 AD7 14 HIS A 259 THR A 271 CRYST1 42.220 67.584 103.239 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023685 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014796 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009686 0.00000