HEADER HYDROLASE 05-FEB-19 6JED TITLE CRYSTAL STRUCTURE OF IMP-1 METALLO-BETA-LACTAMASE IN A COMPLEX WITH TITLE 2 MCR COMPND MOL_ID: 1; COMPND 2 MOLECULE: METALLO-BETA-LACTAMASE TYPE 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: IMP-1 METALLO-BETA-LACTAMASE,B2 METALLO-BETA-LACTAMASE,BLA- COMPND 5 IMP,IMP-1,BETA-LACTAMASE TYPE II,METALLO-BETA-LACTAMASE TYPE II; COMPND 6 EC: 3.5.2.6; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SERRATIA MARCESCENS; SOURCE 3 ORGANISM_TAXID: 615; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS METALLO-BETA-LACTAMASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.WACHINO REVDAT 4 22-NOV-23 6JED 1 REMARK REVDAT 3 15-NOV-23 6JED 1 LINK ATOM REVDAT 2 19-FEB-20 6JED 1 JRNL REVDAT 1 07-AUG-19 6JED 0 JRNL AUTH J.WACHINO,R.KANECHI,E.NISHINO,M.MOCHIZUKI,W.JIN,K.KIMURA, JRNL AUTH 2 H.KUROSAKI,Y.ARAKAWA JRNL TITL 4-AMINO-2-SULFANYLBENZOIC ACID AS A POTENT SUBCLASS B3 JRNL TITL 2 METALLO-BETA-LACTAMASE-SPECIFIC INHIBITOR APPLICABLE FOR JRNL TITL 3 DISTINGUISHING METALLO-BETA-LACTAMASE SUBCLASSES. JRNL REF ANTIMICROB.AGENTS CHEMOTHER. V. 63 2019 JRNL REFN ESSN 1098-6596 JRNL PMID 31405855 JRNL DOI 10.1128/AAC.01197-19 REMARK 2 REMARK 2 RESOLUTION. 1.57 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0230 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.57 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.53 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 28368 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1514 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.57 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.61 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2014 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.86 REMARK 3 BIN R VALUE (WORKING SET) : 0.1930 REMARK 3 BIN FREE R VALUE SET COUNT : 117 REMARK 3 BIN FREE R VALUE : 0.2280 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1728 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 201 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.21000 REMARK 3 B22 (A**2) : 0.85000 REMARK 3 B33 (A**2) : -0.64000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.082 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.084 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.053 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.446 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1824 ; 0.008 ; 0.014 REMARK 3 BOND LENGTHS OTHERS (A): 1706 ; 0.000 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2481 ; 1.266 ; 1.658 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4005 ; 0.941 ; 1.656 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 230 ; 7.749 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 76 ;33.371 ;24.737 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 317 ;14.386 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 3 ; 8.798 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 230 ; 0.279 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1996 ; 0.014 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 336 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 893 ; 2.421 ; 1.900 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 892 ; 2.410 ; 1.896 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1117 ; 3.405 ; 2.839 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1118 ; 3.405 ; 2.844 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 931 ; 3.569 ; 2.313 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 931 ; 3.568 ; 2.313 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1360 ; 5.215 ; 3.294 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2070 ; 6.578 ;23.674 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2028 ; 6.505 ;23.144 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6JED COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1300010966. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29943 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.570 REMARK 200 RESOLUTION RANGE LOW (A) : 56.820 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.30 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.57 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.65 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.20 REMARK 200 R MERGE FOR SHELL (I) : 0.35400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5Y5B REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM ACETATE, 0.1M SODIUM HEPES REMARK 280 BUFFER (PH 7.5), 25% PEG 3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 17.96000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.53000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.41000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.53000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 17.96000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 28.41000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -79.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 GLU A 2 REMARK 465 SER A 224 REMARK 465 LYS A 225 REMARK 465 PRO A 226 REMARK 465 SER A 227 REMARK 465 ASN A 228 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 4 122.10 161.51 REMARK 500 ASN A 41 -104.85 47.61 REMARK 500 ASP A 48 146.32 73.07 REMARK 500 PRO A 50 171.46 -50.14 REMARK 500 ASP A 202 -165.37 -115.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 92 0.18 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 601 DISTANCE = 6.28 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 77 NE2 REMARK 620 2 HIS A 79 ND1 98.0 REMARK 620 3 HIS A 139 NE2 103.7 104.8 REMARK 620 4 MCR A 303 S2 123.4 109.3 115.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 81 OD2 REMARK 620 2 CYS A 158 SG 98.4 REMARK 620 3 HIS A 197 NE2 87.6 113.3 REMARK 620 4 MCR A 303 O 168.2 93.4 87.6 REMARK 620 5 MCR A 303 S2 93.6 119.1 126.8 80.8 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MCR A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EPE A 304 DBREF 6JED A 1 228 UNP P52699 BLAB_SERMA 19 246 SEQRES 1 A 228 ALA GLU SER LEU PRO ASP LEU LYS ILE GLU LYS LEU ASP SEQRES 2 A 228 GLU GLY VAL TYR VAL HIS THR SER PHE GLU GLU VAL ASN SEQRES 3 A 228 GLY TRP GLY VAL VAL PRO LYS HIS GLY LEU VAL VAL LEU SEQRES 4 A 228 VAL ASN ALA GLU ALA TYR LEU ILE ASP THR PRO PHE THR SEQRES 5 A 228 ALA LYS ASP THR GLU LYS LEU VAL THR TRP PHE VAL GLU SEQRES 6 A 228 ARG GLY TYR LYS ILE LYS GLY SER ILE SER SER HIS PHE SEQRES 7 A 228 HIS SER ASP SER THR GLY GLY ILE GLU TRP LEU ASN SER SEQRES 8 A 228 ARG SER ILE PRO THR TYR ALA SER GLU LEU THR ASN GLU SEQRES 9 A 228 LEU LEU LYS LYS ASP GLY LYS VAL GLN ALA THR ASN SER SEQRES 10 A 228 PHE SER GLY VAL ASN TYR TRP LEU VAL LYS ASN LYS ILE SEQRES 11 A 228 GLU VAL PHE TYR PRO GLY PRO GLY HIS THR PRO ASP ASN SEQRES 12 A 228 VAL VAL VAL TRP LEU PRO GLU ARG LYS ILE LEU PHE GLY SEQRES 13 A 228 GLY CYS PHE ILE LYS PRO TYR GLY LEU GLY ASN LEU GLY SEQRES 14 A 228 ASP ALA ASN ILE GLU ALA TRP PRO LYS SER ALA LYS LEU SEQRES 15 A 228 LEU LYS SER LYS TYR GLY LYS ALA LYS LEU VAL VAL PRO SEQRES 16 A 228 SER HIS SER GLU VAL GLY ASP ALA SER LEU LEU LYS LEU SEQRES 17 A 228 THR LEU GLU GLN ALA VAL LYS GLY LEU ASN GLU SER LYS SEQRES 18 A 228 LYS PRO SER LYS PRO SER ASN HET ZN A 301 1 HET ZN A 302 1 HET MCR A 303 5 HET EPE A 304 15 HETNAM ZN ZINC ION HETNAM MCR SULFANYLACETIC ACID HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETSYN MCR MERCAPTOACETIC ACID HETSYN EPE HEPES FORMUL 2 ZN 2(ZN 2+) FORMUL 4 MCR C2 H4 O2 S FORMUL 5 EPE C8 H18 N2 O4 S FORMUL 6 HOH *201(H2 O) HELIX 1 AA1 THR A 52 ARG A 66 1 15 HELIX 2 AA2 HIS A 79 GLY A 84 1 6 HELIX 3 AA3 GLY A 85 ARG A 92 1 8 HELIX 4 AA4 GLU A 100 ASP A 109 1 10 HELIX 5 AA5 CYS A 158 ILE A 160 5 3 HELIX 6 AA6 ALA A 175 TYR A 187 1 13 HELIX 7 AA7 ALA A 203 LYS A 221 1 19 SHEET 1 AA1 7 LYS A 8 ASP A 13 0 SHEET 2 AA1 7 VAL A 16 VAL A 25 -1 O VAL A 16 N LEU A 12 SHEET 3 AA1 7 GLY A 29 VAL A 40 -1 O VAL A 31 N GLU A 23 SHEET 4 AA1 7 GLU A 43 ILE A 47 -1 O ILE A 47 N LEU A 36 SHEET 5 AA1 7 LYS A 69 ILE A 74 1 O LYS A 69 N ALA A 44 SHEET 6 AA1 7 THR A 96 SER A 99 1 O TYR A 97 N SER A 73 SHEET 7 AA1 7 ASN A 116 PHE A 118 1 O ASN A 116 N THR A 96 SHEET 1 AA2 5 ASN A 122 VAL A 126 0 SHEET 2 AA2 5 ILE A 130 PHE A 133 -1 O VAL A 132 N TYR A 123 SHEET 3 AA2 5 VAL A 145 LEU A 148 -1 O TRP A 147 N GLU A 131 SHEET 4 AA2 5 ILE A 153 GLY A 157 -1 O PHE A 155 N VAL A 146 SHEET 5 AA2 5 LEU A 192 PRO A 195 1 O VAL A 194 N LEU A 154 LINK NE2 HIS A 77 ZN ZN A 301 1555 1555 2.06 LINK ND1 HIS A 79 ZN ZN A 301 1555 1555 2.05 LINK OD2 ASP A 81 ZN ZN A 302 1555 1555 2.03 LINK NE2 HIS A 139 ZN ZN A 301 1555 1555 2.04 LINK SG CYS A 158 ZN ZN A 302 1555 1555 2.28 LINK NE2 HIS A 197 ZN ZN A 302 1555 1555 2.13 LINK ZN ZN A 301 S2 MCR A 303 1555 1555 2.22 LINK ZN ZN A 302 O MCR A 303 1555 1555 2.25 LINK ZN ZN A 302 S2 MCR A 303 1555 1555 2.36 SITE 1 AC1 5 HIS A 77 HIS A 79 HIS A 139 ZN A 302 SITE 2 AC1 5 MCR A 303 SITE 1 AC2 5 ASP A 81 CYS A 158 HIS A 197 ZN A 301 SITE 2 AC2 5 MCR A 303 SITE 1 AC3 8 HIS A 79 ASP A 81 HIS A 139 CYS A 158 SITE 2 AC3 8 LYS A 161 HIS A 197 ZN A 301 ZN A 302 SITE 1 AC4 9 TRP A 28 GLU A 104 LYS A 161 PRO A 162 SITE 2 AC4 9 TYR A 163 GLY A 164 HIS A 197 SER A 198 SITE 3 AC4 9 HOH A 500 CRYST1 35.920 56.820 101.060 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027840 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017599 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009895 0.00000