HEADER HYDROLASE 08-FEB-19 6JF6 TITLE MET-ALA-SER BOUND CRYSTAL STRUCTURE OF CLASS I TYPE B PEPTIDE TITLE 2 DEFORMYLASE FROM ACINETOBACTER BAUMANNII COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDE DEFORMYLASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: PDF,POLYPEPTIDE DEFORMYLASE; COMPND 5 EC: 3.5.1.88; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: MET-ALA-SER; COMPND 9 CHAIN: E; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACINETOBACTER BAUMANNII; SOURCE 3 ORGANISM_TAXID: 470; SOURCE 4 GENE: DEF, C3415_07350, IX87_00730; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET11A; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630 KEYWDS PEPTIDE DEFORMYLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.H.JUNG,T.H.HO,I.H.LEE,L.W.KANG REVDAT 2 22-NOV-23 6JF6 1 LINK REVDAT 1 12-FEB-20 6JF6 0 JRNL AUTH K.H.JUNG,T.H.HO,I.H.LEE,L.W.KANG JRNL TITL MET-ALA-SER BOUND CRYSTAL STRUCTURE OF CLASS I TYPE B JRNL TITL 2 PEPTIDE DEFORMYLASE FROM ACINETOBACTER BAUMANNII JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 24673 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.292 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.400 REMARK 3 FREE R VALUE TEST SET COUNT : 1397 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.41 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1780 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.58 REMARK 3 BIN R VALUE (WORKING SET) : 0.2960 REMARK 3 BIN FREE R VALUE SET COUNT : 94 REMARK 3 BIN FREE R VALUE : 0.3620 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4858 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 99 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.01000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.510 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.313 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.265 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.389 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.888 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4942 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4686 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6709 ; 1.611 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10870 ; 1.001 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 627 ; 7.207 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 215 ;40.943 ;24.930 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 843 ;16.972 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 31 ;13.581 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 778 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5479 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 900 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6JF6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1300010995. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 5C (4A) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.48560 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26193 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.14600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.48400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 6JES REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M CALCIUM ACETATE HYDRATE, 0.1 M REMARK 280 SODIUM CACODYLATE TRIHYDRATE PH 6.5, 18% (W/V) POLYETHYLENE REMARK 280 GLYCOL 8000, EVAPORATION, TEMPERATURE 287K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 19.67350 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 160 REMARK 465 SER B 160 REMARK 465 SER C 160 REMARK 465 MET D 1 REMARK 465 ARG D 72 REMARK 465 TYR D 73 REMARK 465 ASP D 108 REMARK 465 ILE D 159 REMARK 465 SER D 160 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 96 SD CE REMARK 470 LEU A 98 CD1 CD2 REMARK 470 MET A 130 CG SD CE REMARK 470 ARG A 141 CD NE CZ NH1 NH2 REMARK 470 MET B 96 SD CE REMARK 470 LEU B 98 CD1 CD2 REMARK 470 MET B 130 CG SD CE REMARK 470 THR B 133 CG2 REMARK 470 GLN B 136 OE1 NE2 REMARK 470 ARG B 141 CD NE CZ NH1 NH2 REMARK 470 MET C 96 SD CE REMARK 470 LEU C 98 CD1 CD2 REMARK 470 MET C 130 CG SD CE REMARK 470 THR C 133 CG2 REMARK 470 ARG C 141 CD NE CZ NH1 NH2 REMARK 470 MET D 96 SD CE REMARK 470 LEU D 98 CD1 CD2 REMARK 470 MET D 130 CG SD CE REMARK 470 THR D 133 CG2 REMARK 470 GLN D 136 OE1 NE2 REMARK 470 ARG D 141 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 103 ZN ZN A 201 1.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 10 131.16 -34.29 REMARK 500 SER A 59 59.78 -90.49 REMARK 500 ALA A 66 57.38 -145.26 REMARK 500 ARG A 68 138.16 -174.27 REMARK 500 ASP A 108 63.15 33.29 REMARK 500 GLU A 109 98.32 -162.95 REMARK 500 ASN B 47 79.70 45.41 REMARK 500 ALA B 66 59.26 -147.60 REMARK 500 ASN B 86 59.35 38.38 REMARK 500 GLU B 95 96.29 -62.32 REMARK 500 ASP B 108 49.20 33.59 REMARK 500 ASN C 47 13.37 101.47 REMARK 500 ALA C 66 54.11 -162.54 REMARK 500 ASP C 108 59.89 35.60 REMARK 500 GLU C 109 105.14 -172.37 REMARK 500 ARG D 10 127.28 -33.68 REMARK 500 ALA D 66 54.17 -146.57 REMARK 500 ASP D 75 80.83 -152.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH D 321 DISTANCE = 7.82 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 145 NE2 REMARK 620 2 HIS A 149 NE2 94.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 103 SG REMARK 620 2 HIS B 145 NE2 115.9 REMARK 620 3 HIS B 149 NE2 92.9 115.3 REMARK 620 4 HOH B 302 O 119.0 106.1 107.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 103 SG REMARK 620 2 HIS C 145 NE2 119.6 REMARK 620 3 HIS C 149 NE2 95.1 114.5 REMARK 620 4 HOH E 101 O 127.4 101.8 95.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 103 SG REMARK 620 2 HIS D 145 NE2 113.5 REMARK 620 3 HIS D 149 NE2 95.0 101.5 REMARK 620 4 HOH D 304 O 142.3 98.1 98.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN D 201 DBREF1 6JF6 A 1 160 UNP A0A0E1FIJ3_ACIBA DBREF2 6JF6 A A0A0E1FIJ3 1 160 DBREF1 6JF6 B 1 160 UNP A0A0E1FIJ3_ACIBA DBREF2 6JF6 B A0A0E1FIJ3 1 160 DBREF1 6JF6 C 1 160 UNP A0A0E1FIJ3_ACIBA DBREF2 6JF6 C A0A0E1FIJ3 1 160 DBREF1 6JF6 D 1 160 UNP A0A0E1FIJ3_ACIBA DBREF2 6JF6 D A0A0E1FIJ3 1 160 DBREF 6JF6 E 1 3 PDB 6JF6 6JF6 1 3 SEQRES 1 A 160 MET SER VAL VAL LEU PRO VAL ALA LYS ARG GLY GLU ASP SEQRES 2 A 160 ILE LEU LYS LEU ILE ALA ALA PRO VAL SER ALA ASN GLU SEQRES 3 A 160 LEU ASN SER ASN TRP LEU TYR GLN LEU ALA ASP ALA MET SEQRES 4 A 160 HIS ALA THR MET LEU GLU ARG ASN GLY VAL GLY ILE ALA SEQRES 5 A 160 ALA PRO GLN VAL TYR ILE SER LYS ARG VAL ILE ILE VAL SEQRES 6 A 160 ALA SER ARG PRO ASN PRO ARG TYR PRO ASP ALA PRO GLU SEQRES 7 A 160 MET ASN ALA VAL VAL MET VAL ASN PRO GLU ILE LEU GLU SEQRES 8 A 160 PHE SER SER GLU MET CYS LEU GLY GLU GLU GLY CYS LEU SEQRES 9 A 160 SER VAL PRO ASP GLU ARG GLY GLN VAL GLU ARG ALA GLU SEQRES 10 A 160 MET VAL LYS VAL LYS TYR LEU THR LEU GLN GLY GLU MET SEQRES 11 A 160 VAL GLU THR VAL PHE GLN GLY PHE PRO ALA ARG ILE VAL SEQRES 12 A 160 GLN HIS GLU VAL ASP HIS LEU ASN GLY ILE LEU PHE VAL SEQRES 13 A 160 GLU ARG ILE SER SEQRES 1 B 160 MET SER VAL VAL LEU PRO VAL ALA LYS ARG GLY GLU ASP SEQRES 2 B 160 ILE LEU LYS LEU ILE ALA ALA PRO VAL SER ALA ASN GLU SEQRES 3 B 160 LEU ASN SER ASN TRP LEU TYR GLN LEU ALA ASP ALA MET SEQRES 4 B 160 HIS ALA THR MET LEU GLU ARG ASN GLY VAL GLY ILE ALA SEQRES 5 B 160 ALA PRO GLN VAL TYR ILE SER LYS ARG VAL ILE ILE VAL SEQRES 6 B 160 ALA SER ARG PRO ASN PRO ARG TYR PRO ASP ALA PRO GLU SEQRES 7 B 160 MET ASN ALA VAL VAL MET VAL ASN PRO GLU ILE LEU GLU SEQRES 8 B 160 PHE SER SER GLU MET CYS LEU GLY GLU GLU GLY CYS LEU SEQRES 9 B 160 SER VAL PRO ASP GLU ARG GLY GLN VAL GLU ARG ALA GLU SEQRES 10 B 160 MET VAL LYS VAL LYS TYR LEU THR LEU GLN GLY GLU MET SEQRES 11 B 160 VAL GLU THR VAL PHE GLN GLY PHE PRO ALA ARG ILE VAL SEQRES 12 B 160 GLN HIS GLU VAL ASP HIS LEU ASN GLY ILE LEU PHE VAL SEQRES 13 B 160 GLU ARG ILE SER SEQRES 1 C 160 MET SER VAL VAL LEU PRO VAL ALA LYS ARG GLY GLU ASP SEQRES 2 C 160 ILE LEU LYS LEU ILE ALA ALA PRO VAL SER ALA ASN GLU SEQRES 3 C 160 LEU ASN SER ASN TRP LEU TYR GLN LEU ALA ASP ALA MET SEQRES 4 C 160 HIS ALA THR MET LEU GLU ARG ASN GLY VAL GLY ILE ALA SEQRES 5 C 160 ALA PRO GLN VAL TYR ILE SER LYS ARG VAL ILE ILE VAL SEQRES 6 C 160 ALA SER ARG PRO ASN PRO ARG TYR PRO ASP ALA PRO GLU SEQRES 7 C 160 MET ASN ALA VAL VAL MET VAL ASN PRO GLU ILE LEU GLU SEQRES 8 C 160 PHE SER SER GLU MET CYS LEU GLY GLU GLU GLY CYS LEU SEQRES 9 C 160 SER VAL PRO ASP GLU ARG GLY GLN VAL GLU ARG ALA GLU SEQRES 10 C 160 MET VAL LYS VAL LYS TYR LEU THR LEU GLN GLY GLU MET SEQRES 11 C 160 VAL GLU THR VAL PHE GLN GLY PHE PRO ALA ARG ILE VAL SEQRES 12 C 160 GLN HIS GLU VAL ASP HIS LEU ASN GLY ILE LEU PHE VAL SEQRES 13 C 160 GLU ARG ILE SER SEQRES 1 D 160 MET SER VAL VAL LEU PRO VAL ALA LYS ARG GLY GLU ASP SEQRES 2 D 160 ILE LEU LYS LEU ILE ALA ALA PRO VAL SER ALA ASN GLU SEQRES 3 D 160 LEU ASN SER ASN TRP LEU TYR GLN LEU ALA ASP ALA MET SEQRES 4 D 160 HIS ALA THR MET LEU GLU ARG ASN GLY VAL GLY ILE ALA SEQRES 5 D 160 ALA PRO GLN VAL TYR ILE SER LYS ARG VAL ILE ILE VAL SEQRES 6 D 160 ALA SER ARG PRO ASN PRO ARG TYR PRO ASP ALA PRO GLU SEQRES 7 D 160 MET ASN ALA VAL VAL MET VAL ASN PRO GLU ILE LEU GLU SEQRES 8 D 160 PHE SER SER GLU MET CYS LEU GLY GLU GLU GLY CYS LEU SEQRES 9 D 160 SER VAL PRO ASP GLU ARG GLY GLN VAL GLU ARG ALA GLU SEQRES 10 D 160 MET VAL LYS VAL LYS TYR LEU THR LEU GLN GLY GLU MET SEQRES 11 D 160 VAL GLU THR VAL PHE GLN GLY PHE PRO ALA ARG ILE VAL SEQRES 12 D 160 GLN HIS GLU VAL ASP HIS LEU ASN GLY ILE LEU PHE VAL SEQRES 13 D 160 GLU ARG ILE SER SEQRES 1 E 3 MET ALA SER HET ZN A 201 1 HET ZN B 201 1 HET ZN C 201 1 HET ZN D 201 1 HETNAM ZN ZINC ION FORMUL 6 ZN 4(ZN 2+) FORMUL 10 HOH *99(H2 O) HELIX 1 AA1 GLU A 12 LEU A 17 5 6 HELIX 2 AA2 SER A 23 LEU A 27 5 5 HELIX 3 AA3 SER A 29 ARG A 46 1 18 HELIX 4 AA4 PRO A 54 TYR A 57 5 4 HELIX 5 AA5 GLY A 137 ASN A 151 1 15 HELIX 6 AA6 LEU A 154 ILE A 159 5 6 HELIX 7 AA7 GLU B 12 LEU B 17 5 6 HELIX 8 AA8 SER B 23 LEU B 27 5 5 HELIX 9 AA9 SER B 29 ARG B 46 1 18 HELIX 10 AB1 PRO B 54 TYR B 57 5 4 HELIX 11 AB2 GLY B 137 ASN B 151 1 15 HELIX 12 AB3 LEU B 154 ILE B 159 5 6 HELIX 13 AB4 GLU C 12 LEU C 17 5 6 HELIX 14 AB5 SER C 29 ASN C 47 1 19 HELIX 15 AB6 PRO C 54 TYR C 57 5 4 HELIX 16 AB7 GLY C 137 ASN C 151 1 15 HELIX 17 AB8 LEU C 154 ILE C 159 5 6 HELIX 18 AB9 GLU D 12 LEU D 17 5 6 HELIX 19 AC1 SER D 29 ARG D 46 1 18 HELIX 20 AC2 PRO D 54 TYR D 57 5 4 HELIX 21 AC3 GLY D 137 ASN D 151 1 15 HELIX 22 AC4 LEU D 154 ARG D 158 5 5 SHEET 1 AA1 5 GLY A 50 ALA A 52 0 SHEET 2 AA1 5 VAL A 62 VAL A 65 -1 O ILE A 64 N ILE A 51 SHEET 3 AA1 5 VAL A 82 PHE A 92 -1 O MET A 84 N ILE A 63 SHEET 4 AA1 5 MET A 118 LEU A 124 -1 O LYS A 122 N GLU A 88 SHEET 5 AA1 5 MET A 130 GLN A 136 -1 O PHE A 135 N VAL A 119 SHEET 1 AA2 2 MET A 96 GLU A 101 0 SHEET 2 AA2 2 GLY A 111 ALA A 116 -1 O VAL A 113 N GLY A 99 SHEET 1 AA3 5 GLY B 50 ALA B 52 0 SHEET 2 AA3 5 VAL B 62 VAL B 65 -1 O ILE B 64 N ILE B 51 SHEET 3 AA3 5 VAL B 82 PHE B 92 -1 O MET B 84 N ILE B 63 SHEET 4 AA3 5 MET B 118 LEU B 124 -1 O LEU B 124 N VAL B 85 SHEET 5 AA3 5 MET B 130 GLN B 136 -1 O VAL B 131 N TYR B 123 SHEET 1 AA4 2 MET B 96 CYS B 103 0 SHEET 2 AA4 2 VAL B 106 ALA B 116 -1 O ARG B 115 N CYS B 97 SHEET 1 AA5 5 GLY C 50 ALA C 52 0 SHEET 2 AA5 5 VAL C 62 VAL C 65 -1 O ILE C 64 N ILE C 51 SHEET 3 AA5 5 VAL C 82 PHE C 92 -1 O VAL C 82 N VAL C 65 SHEET 4 AA5 5 MET C 118 LEU C 124 -1 O LEU C 124 N VAL C 85 SHEET 5 AA5 5 MET C 130 GLN C 136 -1 O PHE C 135 N VAL C 119 SHEET 1 AA6 2 MET C 96 CYS C 103 0 SHEET 2 AA6 2 VAL C 106 ALA C 116 -1 O ARG C 115 N CYS C 97 SHEET 1 AA7 5 GLY D 50 ALA D 52 0 SHEET 2 AA7 5 VAL D 62 VAL D 65 -1 O ILE D 64 N ILE D 51 SHEET 3 AA7 5 VAL D 82 PHE D 92 -1 O MET D 84 N ILE D 63 SHEET 4 AA7 5 MET D 118 LEU D 124 -1 O LYS D 122 N GLU D 88 SHEET 5 AA7 5 MET D 130 GLN D 136 -1 O PHE D 135 N VAL D 119 SHEET 1 AA8 2 MET D 96 GLU D 101 0 SHEET 2 AA8 2 GLY D 111 ALA D 116 -1 O ARG D 115 N CYS D 97 LINK NE2 HIS A 145 ZN ZN A 201 1555 1555 2.44 LINK NE2 HIS A 149 ZN ZN A 201 1555 1555 2.60 LINK SG CYS B 103 ZN ZN B 201 1555 1555 2.34 LINK NE2 HIS B 145 ZN ZN B 201 1555 1555 2.05 LINK NE2 HIS B 149 ZN ZN B 201 1555 1555 2.18 LINK ZN ZN B 201 O HOH B 302 1555 1555 2.36 LINK SG CYS C 103 ZN ZN C 201 1555 1555 2.20 LINK NE2 HIS C 145 ZN ZN C 201 1555 1555 2.14 LINK NE2 HIS C 149 ZN ZN C 201 1555 1555 2.17 LINK ZN ZN C 201 O HOH E 101 1555 1555 2.19 LINK SG CYS D 103 ZN ZN D 201 1555 1555 2.23 LINK NE2 HIS D 145 ZN ZN D 201 1555 1555 2.16 LINK NE2 HIS D 149 ZN ZN D 201 1555 1555 2.24 LINK ZN ZN D 201 O HOH D 304 1555 1555 2.33 SITE 1 AC1 6 GLN A 55 CYS A 103 HIS A 145 GLU A 146 SITE 2 AC1 6 HIS A 149 HOH A 326 SITE 1 AC2 6 GLN B 55 CYS B 103 HIS B 145 HIS B 149 SITE 2 AC2 6 HOH B 302 HOH B 324 SITE 1 AC3 5 CYS C 103 HIS C 145 HIS C 149 HOH C 315 SITE 2 AC3 5 HOH E 101 SITE 1 AC4 4 CYS D 103 HIS D 145 HIS D 149 HOH D 304 CRYST1 71.370 39.347 110.353 90.00 89.98 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014011 0.000000 -0.000004 0.00000 SCALE2 0.000000 0.025415 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009062 0.00000