HEADER PEPTIDE BINDING PROTEIN/DNA 13-FEB-19 6JG8 TITLE CRYSTAL STRUCTURE OF AIMR IN COMPLEX WITH DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: AIMR TRANSCRIPTIONAL REGULATOR; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ARBITRIUM COMMUNICATION PEPTIDE RECEPTOR,YOPK PROTEIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (31-MER); COMPND 8 CHAIN: C; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: DNA (31-MER); COMPND 12 CHAIN: D; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS PHAGE SPBETA; SOURCE 3 ORGANISM_COMMON: BACILLUS PHAGE SPBC2; SOURCE 4 ORGANISM_TAXID: 66797; SOURCE 5 GENE: AIMR, YOPK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: BACILLUS PHAGE SPBETA; SOURCE 11 ORGANISM_COMMON: BACILLUS PHAGE SPBC2; SOURCE 12 ORGANISM_TAXID: 66797; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: BACILLUS PHAGE SPBETA; SOURCE 16 ORGANISM_COMMON: BACILLUS PHAGE SPBC2; SOURCE 17 ORGANISM_TAXID: 66797 KEYWDS AIMR, APO, HTH, PEPTIDE BINDING PROTEIN, PEPTIDE BINDING PROTEIN-DNA KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Z.Y.GUAN,K.PEI,T.T.ZOU REVDAT 2 22-NOV-23 6JG8 1 REMARK REVDAT 1 03-JUL-19 6JG8 0 JRNL AUTH Z.Y.GUAN,K.PEI,J.WANG,Y.Q.CUI,X.ZHU,X.SU,Y.B.ZHOU,D.L.ZHANG, JRNL AUTH 2 C.TANG,P.YIN,Z.LIU,T.T.ZOU JRNL TITL STRUCTURAL INSIGHTS INTO DNA RECOGNITION BY AIMR OF THE JRNL TITL 2 ARBITRIUM COMMUNICATION SYSTEM IN THE SPBETA PHAGE. JRNL REF CELL DISCOV V. 5 29 2019 JRNL REFN ESSN 2056-5968 JRNL PMID 31149347 JRNL DOI 10.1038/S41421-019-0101-2 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.14RC3_3206: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.27 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 87785 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.940 REMARK 3 FREE R VALUE TEST SET COUNT : 4338 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.2811 - 6.5080 0.99 2849 123 0.1294 0.1193 REMARK 3 2 6.5080 - 5.1686 0.99 2803 126 0.1804 0.1870 REMARK 3 3 5.1686 - 4.5161 0.99 2786 163 0.1555 0.1674 REMARK 3 4 4.5161 - 4.1035 1.00 2771 148 0.1528 0.1666 REMARK 3 5 4.1035 - 3.8096 1.00 2792 163 0.1714 0.1743 REMARK 3 6 3.8096 - 3.5851 0.99 2780 138 0.1903 0.1870 REMARK 3 7 3.5851 - 3.4057 0.99 2743 163 0.2152 0.2173 REMARK 3 8 3.4057 - 3.2575 0.99 2729 169 0.2244 0.2496 REMARK 3 9 3.2575 - 3.1321 0.99 2774 131 0.2489 0.2400 REMARK 3 10 3.1321 - 3.0241 1.00 2825 123 0.2521 0.2643 REMARK 3 11 3.0241 - 2.9295 1.00 2807 133 0.2507 0.2772 REMARK 3 12 2.9295 - 2.8458 1.00 2750 174 0.2559 0.2791 REMARK 3 13 2.8458 - 2.7709 1.00 2780 139 0.2718 0.2952 REMARK 3 14 2.7709 - 2.7033 1.00 2808 146 0.2968 0.3223 REMARK 3 15 2.7033 - 2.6419 1.00 2732 166 0.2773 0.3069 REMARK 3 16 2.6419 - 2.5857 1.00 2790 160 0.2830 0.3280 REMARK 3 17 2.5857 - 2.5339 1.00 2797 145 0.2782 0.3028 REMARK 3 18 2.5339 - 2.4861 0.99 2745 165 0.2880 0.3228 REMARK 3 19 2.4861 - 2.4417 1.00 2755 137 0.2829 0.2977 REMARK 3 20 2.4417 - 2.4003 1.00 2792 144 0.2872 0.3231 REMARK 3 21 2.4003 - 2.3616 1.00 2820 141 0.2900 0.3167 REMARK 3 22 2.3616 - 2.3253 1.00 2741 148 0.2864 0.3063 REMARK 3 23 2.3253 - 2.2911 1.00 2810 148 0.2891 0.3264 REMARK 3 24 2.2911 - 2.2588 1.00 2758 143 0.2842 0.2991 REMARK 3 25 2.2588 - 2.2283 1.00 2740 153 0.2888 0.3095 REMARK 3 26 2.2283 - 2.1994 1.00 2859 140 0.2980 0.3557 REMARK 3 27 2.1994 - 2.1719 1.00 2775 135 0.3001 0.3226 REMARK 3 28 2.1719 - 2.1457 1.00 2811 127 0.3175 0.3333 REMARK 3 29 2.1457 - 2.1208 1.00 2781 119 0.3077 0.3183 REMARK 3 30 2.1208 - 2.0969 0.98 2744 128 0.3068 0.3191 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.410 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 7923 REMARK 3 ANGLE : 1.066 10928 REMARK 3 CHIRALITY : 0.054 1206 REMARK 3 PLANARITY : 0.005 1186 REMARK 3 DIHEDRAL : 27.924 3085 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 2.3950 38.3412 4.7908 REMARK 3 T TENSOR REMARK 3 T11: 0.3742 T22: 0.5133 REMARK 3 T33: 0.4014 T12: -0.0118 REMARK 3 T13: 0.0186 T23: 0.0469 REMARK 3 L TENSOR REMARK 3 L11: 0.8045 L22: -0.1139 REMARK 3 L33: 0.0007 L12: -0.0655 REMARK 3 L13: -0.0521 L23: 0.0472 REMARK 3 S TENSOR REMARK 3 S11: 0.0399 S12: -0.0296 S13: -0.2176 REMARK 3 S21: 0.0200 S22: -0.0609 S23: -0.0564 REMARK 3 S31: -0.0478 S32: 0.0717 S33: 0.0200 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6JG8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1300011064. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-OCT-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 97895 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.097 REMARK 200 RESOLUTION RANGE LOW (A) : 45.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 1.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.13 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5XYB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM CACODYLATE, PEG 4000, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 79.99750 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 119.99625 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 39.99875 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 43770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -64.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 LEU A 387 REMARK 465 GLU A 388 REMARK 465 HIS A 389 REMARK 465 HIS A 390 REMARK 465 HIS A 391 REMARK 465 HIS A 392 REMARK 465 HIS A 393 REMARK 465 HIS A 394 REMARK 465 HIS B 393 REMARK 465 HIS B 394 REMARK 465 DA C 0 REMARK 465 DT D 31 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 342 CG CD OE1 OE2 REMARK 470 GLU B 342 CG CD OE1 OE2 REMARK 470 DC C 1 P OP1 OP2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE ARG B 82 O HOH B 401 1.74 REMARK 500 OE1 GLN B 176 O HOH B 402 1.75 REMARK 500 O HOH A 407 O HOH A 432 1.80 REMARK 500 N7 DA D 24 O HOH D 101 1.86 REMARK 500 OE2 GLU A 134 O HOH A 401 1.87 REMARK 500 OE1 GLU B 184 O HOH B 403 1.87 REMARK 500 O HOH B 496 O HOH B 519 1.88 REMARK 500 NZ LYS B 255 O HOH B 404 1.89 REMARK 500 O HOH B 460 O HOH B 534 1.89 REMARK 500 O HOH A 447 O HOH A 479 1.90 REMARK 500 O HOH B 516 O HOH B 533 1.90 REMARK 500 OE1 GLU B 181 O HOH B 405 1.92 REMARK 500 NH2 ARG B 82 O HOH B 401 1.93 REMARK 500 OP2 DT D 9 O HOH D 102 1.95 REMARK 500 NZ LYS B 117 O HOH B 406 1.96 REMARK 500 O HOH A 446 O HOH A 469 2.00 REMARK 500 OG SER B 312 O HOH B 407 2.00 REMARK 500 OH TYR B 159 O HOH B 408 2.01 REMARK 500 OE1 GLU B 376 O HOH B 409 2.02 REMARK 500 OP2 DG D 8 O HOH D 103 2.03 REMARK 500 O GLY A 256 OG SER A 260 2.05 REMARK 500 N3 DA C 18 O HOH C 101 2.06 REMARK 500 OG1 THR B 78 O HOH B 410 2.08 REMARK 500 O HOH A 476 O HOH A 479 2.10 REMARK 500 OE1 GLU A 181 O HOH A 402 2.10 REMARK 500 CZ ARG B 82 O HOH B 401 2.10 REMARK 500 O4 DT C 30 N6 DA D 1 2.13 REMARK 500 O PRO B 60 O HOH B 411 2.13 REMARK 500 OE1 GLU A 370 O HOH A 403 2.14 REMARK 500 N6 DA D 24 O HOH D 101 2.14 REMARK 500 O ARG B 138 O HOH B 412 2.15 REMARK 500 OG SER B 217 O HOH B 413 2.15 REMARK 500 C1' DA C 18 O HOH C 101 2.16 REMARK 500 N3 DT C 7 O HOH D 101 2.16 REMARK 500 OE1 GLU A 47 O HOH A 404 2.17 REMARK 500 O HOH B 484 O HOH B 514 2.17 REMARK 500 OD1 ASP B 178 OG SER B 180 2.18 REMARK 500 O HOH B 518 O HOH B 527 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS B 304 CB CYS B 304 SG 0.176 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 381 CA - CB - CG ANGL. DEV. = 21.2 DEGREES REMARK 500 CYS B 304 CA - CB - SG ANGL. DEV. = 9.7 DEGREES REMARK 500 DG C 13 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DA C 18 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DA C 21 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES REMARK 500 DG C 29 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DA D 4 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DA D 15 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DA D 17 O4' - C1' - N9 ANGL. DEV. = 3.2 DEGREES REMARK 500 DA D 24 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DA D 28 C3' - C2' - C1' ANGL. DEV. = -4.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 72 -3.90 -59.30 REMARK 500 PHE A 167 -20.65 52.57 REMARK 500 ASN A 208 49.88 30.30 REMARK 500 SER A 209 65.12 -101.33 REMARK 500 SER A 244 -31.99 -131.99 REMARK 500 GLU A 310 52.14 -90.30 REMARK 500 PHE A 362 -73.59 -118.62 REMARK 500 LEU A 384 -9.97 -58.19 REMARK 500 LEU A 385 41.11 -99.12 REMARK 500 ASN B 166 95.72 -63.23 REMARK 500 GLU B 291 34.70 -99.39 REMARK 500 PHE B 362 -71.90 -118.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 557 DISTANCE = 6.10 ANGSTROMS REMARK 525 HOH B 558 DISTANCE = 6.26 ANGSTROMS REMARK 525 HOH B 559 DISTANCE = 6.40 ANGSTROMS REMARK 525 HOH B 560 DISTANCE = 6.63 ANGSTROMS REMARK 525 HOH B 561 DISTANCE = 6.80 ANGSTROMS DBREF 6JG8 A 1 386 UNP O64094 AIMR_BPSPB 1 386 DBREF 6JG8 B 1 386 UNP O64094 AIMR_BPSPB 1 386 DBREF 6JG8 C 0 30 PDB 6JG8 6JG8 0 30 DBREF 6JG8 D 1 31 PDB 6JG8 6JG8 1 31 SEQADV 6JG8 MET A 0 UNP O64094 INITIATING METHIONINE SEQADV 6JG8 LEU A 387 UNP O64094 EXPRESSION TAG SEQADV 6JG8 GLU A 388 UNP O64094 EXPRESSION TAG SEQADV 6JG8 HIS A 389 UNP O64094 EXPRESSION TAG SEQADV 6JG8 HIS A 390 UNP O64094 EXPRESSION TAG SEQADV 6JG8 HIS A 391 UNP O64094 EXPRESSION TAG SEQADV 6JG8 HIS A 392 UNP O64094 EXPRESSION TAG SEQADV 6JG8 HIS A 393 UNP O64094 EXPRESSION TAG SEQADV 6JG8 HIS A 394 UNP O64094 EXPRESSION TAG SEQADV 6JG8 MET B 0 UNP O64094 INITIATING METHIONINE SEQADV 6JG8 LEU B 387 UNP O64094 EXPRESSION TAG SEQADV 6JG8 GLU B 388 UNP O64094 EXPRESSION TAG SEQADV 6JG8 HIS B 389 UNP O64094 EXPRESSION TAG SEQADV 6JG8 HIS B 390 UNP O64094 EXPRESSION TAG SEQADV 6JG8 HIS B 391 UNP O64094 EXPRESSION TAG SEQADV 6JG8 HIS B 392 UNP O64094 EXPRESSION TAG SEQADV 6JG8 HIS B 393 UNP O64094 EXPRESSION TAG SEQADV 6JG8 HIS B 394 UNP O64094 EXPRESSION TAG SEQRES 1 A 395 MET MET GLU LEU ILE ARG ILE ALA MET LYS LYS ASP LEU SEQRES 2 A 395 GLU ASN ASP ASN SER LEU MET ASN LYS TRP ALA THR VAL SEQRES 3 A 395 ALA GLY LEU LYS ASN PRO ASN PRO LEU TYR ASP PHE LEU SEQRES 4 A 395 ASN HIS ASP GLY LYS THR PHE ASN GLU PHE SER SER ILE SEQRES 5 A 395 VAL ASN ILE VAL LYS SER GLN TYR PRO ASP ARG GLU TYR SEQRES 6 A 395 GLU LEU MET LYS ASP TYR CYS LEU ASN LEU ASP VAL LYS SEQRES 7 A 395 THR LYS ALA ALA ARG SER ALA LEU GLU TYR ALA ASP ALA SEQRES 8 A 395 ASN MET PHE PHE GLU ILE GLU ASP VAL LEU ILE ASP SER SEQRES 9 A 395 MET ILE SER CYS SER ASN MET LYS SER LYS GLU TYR GLY SEQRES 10 A 395 LYS VAL TYR LYS ILE HIS ARG GLU LEU SER ASN SER VAL SEQRES 11 A 395 ILE THR GLU PHE GLU ALA VAL LYS ARG LEU GLY LYS LEU SEQRES 12 A 395 ASN ILE LYS THR PRO GLU MET ASN SER PHE SER ARG LEU SEQRES 13 A 395 LEU LEU LEU TYR HIS TYR LEU SER THR GLY ASN PHE SER SEQRES 14 A 395 PRO MET ALA GLN LEU ILE LYS GLN ILE ASP LEU SER GLU SEQRES 15 A 395 ILE SER GLU ASN MET TYR ILE ARG ASN THR TYR GLN THR SEQRES 16 A 395 ARG VAL HIS VAL LEU MET SER ASN ILE LYS LEU ASN GLU SEQRES 17 A 395 ASN SER LEU GLU GLU CYS ARG GLU TYR SER LYS LYS ALA SEQRES 18 A 395 LEU GLU SER THR ASN ILE LEU ARG PHE GLN VAL PHE SER SEQRES 19 A 395 TYR LEU THR ILE GLY ASN SER LEU LEU PHE SER ASN TYR SEQRES 20 A 395 GLU LEU ALA GLN GLU ASN PHE LEU LYS GLY LEU SER ILE SEQRES 21 A 395 SER VAL GLN ASN GLU ASN TYR ASN MET ILE PHE GLN GLN SEQRES 22 A 395 ALA LEU CYS PHE LEU ASN ASN VAL TRP ARG LYS GLU ASN SEQRES 23 A 395 LYS TRP ILE ASN PHE GLU SER ASP SER ILE MET ASP LEU SEQRES 24 A 395 GLN GLU GLN ALA HIS CYS PHE ILE ASN PHE ASN GLU ASN SEQRES 25 A 395 SER LYS ALA LYS GLU VAL LEU ASP LYS LEU ASP LEU LEU SEQRES 26 A 395 VAL HIS ASN ASP ASN GLU LEU ALA MET HIS TYR TYR LEU SEQRES 27 A 395 LYS GLY ARG LEU GLU GLN ASN LYS ALA CYS PHE TYR SER SEQRES 28 A 395 SER ILE GLU TYR PHE LYS LYS SER ASN ASP LYS PHE LEU SEQRES 29 A 395 ILE ARG LEU PRO LEU LEU GLU LEU GLN LYS MET GLY GLU SEQRES 30 A 395 ASN GLN LYS LEU LEU GLU LEU LEU LEU LEU LEU GLU HIS SEQRES 31 A 395 HIS HIS HIS HIS HIS SEQRES 1 B 395 MET MET GLU LEU ILE ARG ILE ALA MET LYS LYS ASP LEU SEQRES 2 B 395 GLU ASN ASP ASN SER LEU MET ASN LYS TRP ALA THR VAL SEQRES 3 B 395 ALA GLY LEU LYS ASN PRO ASN PRO LEU TYR ASP PHE LEU SEQRES 4 B 395 ASN HIS ASP GLY LYS THR PHE ASN GLU PHE SER SER ILE SEQRES 5 B 395 VAL ASN ILE VAL LYS SER GLN TYR PRO ASP ARG GLU TYR SEQRES 6 B 395 GLU LEU MET LYS ASP TYR CYS LEU ASN LEU ASP VAL LYS SEQRES 7 B 395 THR LYS ALA ALA ARG SER ALA LEU GLU TYR ALA ASP ALA SEQRES 8 B 395 ASN MET PHE PHE GLU ILE GLU ASP VAL LEU ILE ASP SER SEQRES 9 B 395 MET ILE SER CYS SER ASN MET LYS SER LYS GLU TYR GLY SEQRES 10 B 395 LYS VAL TYR LYS ILE HIS ARG GLU LEU SER ASN SER VAL SEQRES 11 B 395 ILE THR GLU PHE GLU ALA VAL LYS ARG LEU GLY LYS LEU SEQRES 12 B 395 ASN ILE LYS THR PRO GLU MET ASN SER PHE SER ARG LEU SEQRES 13 B 395 LEU LEU LEU TYR HIS TYR LEU SER THR GLY ASN PHE SER SEQRES 14 B 395 PRO MET ALA GLN LEU ILE LYS GLN ILE ASP LEU SER GLU SEQRES 15 B 395 ILE SER GLU ASN MET TYR ILE ARG ASN THR TYR GLN THR SEQRES 16 B 395 ARG VAL HIS VAL LEU MET SER ASN ILE LYS LEU ASN GLU SEQRES 17 B 395 ASN SER LEU GLU GLU CYS ARG GLU TYR SER LYS LYS ALA SEQRES 18 B 395 LEU GLU SER THR ASN ILE LEU ARG PHE GLN VAL PHE SER SEQRES 19 B 395 TYR LEU THR ILE GLY ASN SER LEU LEU PHE SER ASN TYR SEQRES 20 B 395 GLU LEU ALA GLN GLU ASN PHE LEU LYS GLY LEU SER ILE SEQRES 21 B 395 SER VAL GLN ASN GLU ASN TYR ASN MET ILE PHE GLN GLN SEQRES 22 B 395 ALA LEU CYS PHE LEU ASN ASN VAL TRP ARG LYS GLU ASN SEQRES 23 B 395 LYS TRP ILE ASN PHE GLU SER ASP SER ILE MET ASP LEU SEQRES 24 B 395 GLN GLU GLN ALA HIS CYS PHE ILE ASN PHE ASN GLU ASN SEQRES 25 B 395 SER LYS ALA LYS GLU VAL LEU ASP LYS LEU ASP LEU LEU SEQRES 26 B 395 VAL HIS ASN ASP ASN GLU LEU ALA MET HIS TYR TYR LEU SEQRES 27 B 395 LYS GLY ARG LEU GLU GLN ASN LYS ALA CYS PHE TYR SER SEQRES 28 B 395 SER ILE GLU TYR PHE LYS LYS SER ASN ASP LYS PHE LEU SEQRES 29 B 395 ILE ARG LEU PRO LEU LEU GLU LEU GLN LYS MET GLY GLU SEQRES 30 B 395 ASN GLN LYS LEU LEU GLU LEU LEU LEU LEU LEU GLU HIS SEQRES 31 B 395 HIS HIS HIS HIS HIS SEQRES 1 C 31 DA DC DT DT DA DA DA DT DA DT DT DA DG SEQRES 2 C 31 DG DT DT DT DT DA DA DT DA DA DC DA DT SEQRES 3 C 31 DC DT DA DG DT SEQRES 1 D 31 DA DC DT DA DG DA DT DG DT DT DA DT DT SEQRES 2 D 31 DA DA DA DA DC DC DT DA DA DT DA DT DT SEQRES 3 D 31 DT DA DA DG DT FORMUL 5 HOH *257(H2 O) HELIX 1 AA1 GLU A 2 ASP A 15 1 14 HELIX 2 AA2 SER A 17 ALA A 26 1 10 HELIX 3 AA3 PRO A 31 HIS A 40 1 10 HELIX 4 AA4 PHE A 48 TYR A 59 1 12 HELIX 5 AA5 ARG A 62 LEU A 72 1 11 HELIX 6 AA6 THR A 78 ASN A 91 1 14 HELIX 7 AA7 PHE A 93 ILE A 105 1 13 HELIX 8 AA8 ASN A 109 ASN A 127 1 19 HELIX 9 AA9 THR A 131 LEU A 142 1 12 HELIX 10 AB1 THR A 146 THR A 164 1 19 HELIX 11 AB2 PRO A 169 ILE A 177 1 9 HELIX 12 AB3 ASP A 178 ILE A 182 5 5 HELIX 13 AB4 ASN A 185 ASN A 206 1 22 HELIX 14 AB5 SER A 209 SER A 223 1 15 HELIX 15 AB6 ILE A 226 LEU A 242 1 17 HELIX 16 AB7 ASN A 245 SER A 260 1 16 HELIX 17 AB8 ASN A 263 TRP A 281 1 19 HELIX 18 AB9 SER A 294 PHE A 308 1 15 HELIX 19 AC1 GLU A 310 LEU A 323 1 14 HELIX 20 AC2 ASN A 327 GLN A 343 1 17 HELIX 21 AC3 ASN A 344 LYS A 357 1 14 HELIX 22 AC4 ILE A 364 MET A 374 1 11 HELIX 23 AC5 ASN A 377 LEU A 384 1 8 HELIX 24 AC6 GLU B 2 ASP B 15 1 14 HELIX 25 AC7 SER B 17 ALA B 26 1 10 HELIX 26 AC8 PRO B 31 HIS B 40 1 10 HELIX 27 AC9 PHE B 48 TYR B 59 1 12 HELIX 28 AD1 ARG B 62 LEU B 72 1 11 HELIX 29 AD2 THR B 78 ASN B 91 1 14 HELIX 30 AD3 PHE B 93 SER B 106 1 14 HELIX 31 AD4 ASN B 109 ASN B 127 1 19 HELIX 32 AD5 THR B 131 LEU B 142 1 12 HELIX 33 AD6 THR B 146 GLY B 165 1 20 HELIX 34 AD7 PRO B 169 ILE B 177 1 9 HELIX 35 AD8 ASP B 178 ILE B 182 5 5 HELIX 36 AD9 ASN B 185 GLU B 207 1 23 HELIX 37 AE1 SER B 209 SER B 223 1 15 HELIX 38 AE2 ILE B 226 LEU B 242 1 17 HELIX 39 AE3 ASN B 245 ILE B 259 1 15 HELIX 40 AE4 ASN B 263 TRP B 281 1 19 HELIX 41 AE5 SER B 294 PHE B 308 1 15 HELIX 42 AE6 GLU B 310 ASP B 322 1 13 HELIX 43 AE7 ASN B 327 GLN B 343 1 17 HELIX 44 AE8 ASN B 344 SER B 358 1 15 HELIX 45 AE9 ILE B 364 LYS B 373 1 10 HELIX 46 AF1 ASN B 377 LEU B 385 1 9 CRYST1 98.007 98.007 159.995 90.00 90.00 90.00 P 43 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010203 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010203 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006250 0.00000