HEADER OXIDOREDUCTASE 20-FEB-19 6JIB TITLE HUMAN MTHFD2 IN COMPLEX WITH DS44960156 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIFUNCTIONAL METHYLENETETRAHYDROFOLATE COMPND 3 DEHYDROGENASE/CYCLOHYDROLASE, MITOCHONDRIAL; COMPND 4 CHAIN: A, B; COMPND 5 EC: 1.5.1.15,3.5.4.9; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MTHFD2, NMDMC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS INHIBITOR, FOLATE, COFACTOR, DEHYDROGENASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.SUZUKI,Y.MATSUI,J.KAWAI REVDAT 3 22-NOV-23 6JIB 1 REMARK REVDAT 2 10-JUL-19 6JIB 1 JRNL REVDAT 1 05-JUN-19 6JIB 0 JRNL AUTH J.KAWAI,M.OTA,H.OHKI,T.TOKI,M.SUZUKI,T.SHIMADA,S.MATSUI, JRNL AUTH 2 H.INOUE,C.SUGIHARA,N.MATSUHASHI,Y.MATSUI,S.TAKAISHI, JRNL AUTH 3 K.NAKAYAMA JRNL TITL STRUCTURE-BASED DESIGN AND SYNTHESIS OF AN ISOZYME-SELECTIVE JRNL TITL 2 MTHFD2 INHIBITOR WITH A TRICYCLIC COUMARIN SCAFFOLD. JRNL REF ACS MED.CHEM.LETT. V. 10 893 2019 JRNL REFN ISSN 1948-5875 JRNL PMID 31223444 JRNL DOI 10.1021/ACSMEDCHEMLETT.9B00069 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 39113 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 2147 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 15 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.33 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3829 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.63 REMARK 3 BIN R VALUE (WORKING SET) : 0.3110 REMARK 3 BIN FREE R VALUE SET COUNT : 187 REMARK 3 BIN FREE R VALUE : 0.3450 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4375 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 144 REMARK 3 SOLVENT ATOMS : 141 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.44000 REMARK 3 B22 (A**2) : 1.44000 REMARK 3 B33 (A**2) : -4.67000 REMARK 3 B12 (A**2) : 0.72000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.221 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.193 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.169 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.389 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4615 ; 0.007 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6278 ; 1.626 ; 1.665 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 583 ; 6.842 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 190 ;37.286 ;22.895 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 775 ;18.002 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;21.245 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 622 ; 0.105 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3424 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6JIB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1300011169. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.3 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41331 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 46.050 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.600 REMARK 200 R MERGE (I) : 0.09800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.93700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1DIA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 28% I-PROH, 0.1M BIS-TRIS, PH 6.5, 3% REMARK 280 PEG 200, 10 MM SPERMIDINE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.45200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 37.72600 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 56.58900 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 18.86300 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 94.31500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 16 REMARK 465 GLY A 17 REMARK 465 SER A 18 REMARK 465 SER A 19 REMARK 465 HIS A 20 REMARK 465 HIS A 21 REMARK 465 HIS A 22 REMARK 465 HIS A 23 REMARK 465 HIS A 24 REMARK 465 HIS A 25 REMARK 465 SER A 26 REMARK 465 SER A 27 REMARK 465 GLY A 28 REMARK 465 GLU A 29 REMARK 465 ASN A 30 REMARK 465 LEU A 31 REMARK 465 TYR A 32 REMARK 465 PHE A 33 REMARK 465 GLN A 34 REMARK 465 GLY A 35 REMARK 465 ASP A 281 REMARK 465 PRO A 282 REMARK 465 VAL A 283 REMARK 465 THR A 284 REMARK 465 ALA A 285 REMARK 465 LEU A 334 REMARK 465 GLU A 335 REMARK 465 GLU A 336 REMARK 465 ARG A 337 REMARK 465 GLU A 338 REMARK 465 MET B 16 REMARK 465 GLY B 17 REMARK 465 SER B 18 REMARK 465 SER B 19 REMARK 465 HIS B 20 REMARK 465 HIS B 21 REMARK 465 HIS B 22 REMARK 465 HIS B 23 REMARK 465 HIS B 24 REMARK 465 HIS B 25 REMARK 465 SER B 26 REMARK 465 SER B 27 REMARK 465 GLY B 28 REMARK 465 GLU B 29 REMARK 465 ASN B 30 REMARK 465 LEU B 31 REMARK 465 TYR B 32 REMARK 465 PHE B 33 REMARK 465 GLN B 34 REMARK 465 GLY B 35 REMARK 465 PRO B 282 REMARK 465 VAL B 283 REMARK 465 THR B 284 REMARK 465 ALA B 285 REMARK 465 LEU B 334 REMARK 465 GLU B 335 REMARK 465 GLU B 336 REMARK 465 ARG B 337 REMARK 465 GLU B 338 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 230 CD1 REMARK 470 LYS A 237 CG CD CE NZ REMARK 470 LYS A 242 CE NZ REMARK 470 ILE A 265 CD1 REMARK 470 GLU A 267 CG CD OE1 OE2 REMARK 470 ARG A 278 CD NE CZ NH1 NH2 REMARK 470 VAL A 279 CG1 CG2 REMARK 470 LYS A 286 CG CD CE NZ REMARK 470 GLN A 300 CG CD OE1 NE2 REMARK 470 ARG A 333 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 36 CG CD OE1 OE2 REMARK 470 GLU B 137 CG CD OE1 OE2 REMARK 470 LYS B 237 CD CE NZ REMARK 470 LYS B 241 CD CE NZ REMARK 470 LYS B 242 CD CE NZ REMARK 470 ILE B 265 CD1 REMARK 470 GLU B 267 CG CD OE1 OE2 REMARK 470 ARG B 278 CG CD NE CZ NH1 NH2 REMARK 470 HIS B 280 CG ND1 CD2 CE1 NE2 REMARK 470 ASP B 281 CG OD1 OD2 REMARK 470 LYS B 286 CG CD CE NZ REMARK 470 GLU B 296 CG CD OE1 OE2 REMARK 470 ARG B 299 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 300 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 77 11.48 -148.26 REMARK 500 ALA A 106 -8.58 -59.97 REMARK 500 ARG A 201 21.68 -145.25 REMARK 500 VAL A 205 -75.66 -127.47 REMARK 500 VAL A 279 -167.33 -117.25 REMARK 500 GLU B 77 26.32 -147.97 REMARK 500 ARG B 201 23.23 -143.72 REMARK 500 VAL B 205 -74.04 -124.81 REMARK 500 HIS B 232 -167.05 -168.17 REMARK 500 ALA B 253 52.78 -142.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BQF A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BQF A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BQF B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BQF B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 405 DBREF 6JIB A 36 338 UNP P13995 MTDC_HUMAN 36 338 DBREF 6JIB B 36 338 UNP P13995 MTDC_HUMAN 36 338 SEQADV 6JIB MET A 16 UNP P13995 EXPRESSION TAG SEQADV 6JIB GLY A 17 UNP P13995 EXPRESSION TAG SEQADV 6JIB SER A 18 UNP P13995 EXPRESSION TAG SEQADV 6JIB SER A 19 UNP P13995 EXPRESSION TAG SEQADV 6JIB HIS A 20 UNP P13995 EXPRESSION TAG SEQADV 6JIB HIS A 21 UNP P13995 EXPRESSION TAG SEQADV 6JIB HIS A 22 UNP P13995 EXPRESSION TAG SEQADV 6JIB HIS A 23 UNP P13995 EXPRESSION TAG SEQADV 6JIB HIS A 24 UNP P13995 EXPRESSION TAG SEQADV 6JIB HIS A 25 UNP P13995 EXPRESSION TAG SEQADV 6JIB SER A 26 UNP P13995 EXPRESSION TAG SEQADV 6JIB SER A 27 UNP P13995 EXPRESSION TAG SEQADV 6JIB GLY A 28 UNP P13995 EXPRESSION TAG SEQADV 6JIB GLU A 29 UNP P13995 EXPRESSION TAG SEQADV 6JIB ASN A 30 UNP P13995 EXPRESSION TAG SEQADV 6JIB LEU A 31 UNP P13995 EXPRESSION TAG SEQADV 6JIB TYR A 32 UNP P13995 EXPRESSION TAG SEQADV 6JIB PHE A 33 UNP P13995 EXPRESSION TAG SEQADV 6JIB GLN A 34 UNP P13995 EXPRESSION TAG SEQADV 6JIB GLY A 35 UNP P13995 EXPRESSION TAG SEQADV 6JIB MET B 16 UNP P13995 EXPRESSION TAG SEQADV 6JIB GLY B 17 UNP P13995 EXPRESSION TAG SEQADV 6JIB SER B 18 UNP P13995 EXPRESSION TAG SEQADV 6JIB SER B 19 UNP P13995 EXPRESSION TAG SEQADV 6JIB HIS B 20 UNP P13995 EXPRESSION TAG SEQADV 6JIB HIS B 21 UNP P13995 EXPRESSION TAG SEQADV 6JIB HIS B 22 UNP P13995 EXPRESSION TAG SEQADV 6JIB HIS B 23 UNP P13995 EXPRESSION TAG SEQADV 6JIB HIS B 24 UNP P13995 EXPRESSION TAG SEQADV 6JIB HIS B 25 UNP P13995 EXPRESSION TAG SEQADV 6JIB SER B 26 UNP P13995 EXPRESSION TAG SEQADV 6JIB SER B 27 UNP P13995 EXPRESSION TAG SEQADV 6JIB GLY B 28 UNP P13995 EXPRESSION TAG SEQADV 6JIB GLU B 29 UNP P13995 EXPRESSION TAG SEQADV 6JIB ASN B 30 UNP P13995 EXPRESSION TAG SEQADV 6JIB LEU B 31 UNP P13995 EXPRESSION TAG SEQADV 6JIB TYR B 32 UNP P13995 EXPRESSION TAG SEQADV 6JIB PHE B 33 UNP P13995 EXPRESSION TAG SEQADV 6JIB GLN B 34 UNP P13995 EXPRESSION TAG SEQADV 6JIB GLY B 35 UNP P13995 EXPRESSION TAG SEQRES 1 A 323 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 323 GLU ASN LEU TYR PHE GLN GLY GLU ALA VAL VAL ILE SER SEQRES 3 A 323 GLY ARG LYS LEU ALA GLN GLN ILE LYS GLN GLU VAL ARG SEQRES 4 A 323 GLN GLU VAL GLU GLU TRP VAL ALA SER GLY ASN LYS ARG SEQRES 5 A 323 PRO HIS LEU SER VAL ILE LEU VAL GLY GLU ASN PRO ALA SEQRES 6 A 323 SER HIS SER TYR VAL LEU ASN LYS THR ARG ALA ALA ALA SEQRES 7 A 323 VAL VAL GLY ILE ASN SER GLU THR ILE MET LYS PRO ALA SEQRES 8 A 323 SER ILE SER GLU GLU GLU LEU LEU ASN LEU ILE ASN LYS SEQRES 9 A 323 LEU ASN ASN ASP ASP ASN VAL ASP GLY LEU LEU VAL GLN SEQRES 10 A 323 LEU PRO LEU PRO GLU HIS ILE ASP GLU ARG ARG ILE CYS SEQRES 11 A 323 ASN ALA VAL SER PRO ASP LYS ASP VAL ASP GLY PHE HIS SEQRES 12 A 323 VAL ILE ASN VAL GLY ARG MET CYS LEU ASP GLN TYR SER SEQRES 13 A 323 MET LEU PRO ALA THR PRO TRP GLY VAL TRP GLU ILE ILE SEQRES 14 A 323 LYS ARG THR GLY ILE PRO THR LEU GLY LYS ASN VAL VAL SEQRES 15 A 323 VAL ALA GLY ARG SER LYS ASN VAL GLY MET PRO ILE ALA SEQRES 16 A 323 MET LEU LEU HIS THR ASP GLY ALA HIS GLU ARG PRO GLY SEQRES 17 A 323 GLY ASP ALA THR VAL THR ILE SER HIS ARG TYR THR PRO SEQRES 18 A 323 LYS GLU GLN LEU LYS LYS HIS THR ILE LEU ALA ASP ILE SEQRES 19 A 323 VAL ILE SER ALA ALA GLY ILE PRO ASN LEU ILE THR ALA SEQRES 20 A 323 ASP MET ILE LYS GLU GLY ALA ALA VAL ILE ASP VAL GLY SEQRES 21 A 323 ILE ASN ARG VAL HIS ASP PRO VAL THR ALA LYS PRO LYS SEQRES 22 A 323 LEU VAL GLY ASP VAL ASP PHE GLU GLY VAL ARG GLN LYS SEQRES 23 A 323 ALA GLY TYR ILE THR PRO VAL PRO GLY GLY VAL GLY PRO SEQRES 24 A 323 MET THR VAL ALA MET LEU MET LYS ASN THR ILE ILE ALA SEQRES 25 A 323 ALA LYS LYS VAL LEU ARG LEU GLU GLU ARG GLU SEQRES 1 B 323 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 323 GLU ASN LEU TYR PHE GLN GLY GLU ALA VAL VAL ILE SER SEQRES 3 B 323 GLY ARG LYS LEU ALA GLN GLN ILE LYS GLN GLU VAL ARG SEQRES 4 B 323 GLN GLU VAL GLU GLU TRP VAL ALA SER GLY ASN LYS ARG SEQRES 5 B 323 PRO HIS LEU SER VAL ILE LEU VAL GLY GLU ASN PRO ALA SEQRES 6 B 323 SER HIS SER TYR VAL LEU ASN LYS THR ARG ALA ALA ALA SEQRES 7 B 323 VAL VAL GLY ILE ASN SER GLU THR ILE MET LYS PRO ALA SEQRES 8 B 323 SER ILE SER GLU GLU GLU LEU LEU ASN LEU ILE ASN LYS SEQRES 9 B 323 LEU ASN ASN ASP ASP ASN VAL ASP GLY LEU LEU VAL GLN SEQRES 10 B 323 LEU PRO LEU PRO GLU HIS ILE ASP GLU ARG ARG ILE CYS SEQRES 11 B 323 ASN ALA VAL SER PRO ASP LYS ASP VAL ASP GLY PHE HIS SEQRES 12 B 323 VAL ILE ASN VAL GLY ARG MET CYS LEU ASP GLN TYR SER SEQRES 13 B 323 MET LEU PRO ALA THR PRO TRP GLY VAL TRP GLU ILE ILE SEQRES 14 B 323 LYS ARG THR GLY ILE PRO THR LEU GLY LYS ASN VAL VAL SEQRES 15 B 323 VAL ALA GLY ARG SER LYS ASN VAL GLY MET PRO ILE ALA SEQRES 16 B 323 MET LEU LEU HIS THR ASP GLY ALA HIS GLU ARG PRO GLY SEQRES 17 B 323 GLY ASP ALA THR VAL THR ILE SER HIS ARG TYR THR PRO SEQRES 18 B 323 LYS GLU GLN LEU LYS LYS HIS THR ILE LEU ALA ASP ILE SEQRES 19 B 323 VAL ILE SER ALA ALA GLY ILE PRO ASN LEU ILE THR ALA SEQRES 20 B 323 ASP MET ILE LYS GLU GLY ALA ALA VAL ILE ASP VAL GLY SEQRES 21 B 323 ILE ASN ARG VAL HIS ASP PRO VAL THR ALA LYS PRO LYS SEQRES 22 B 323 LEU VAL GLY ASP VAL ASP PHE GLU GLY VAL ARG GLN LYS SEQRES 23 B 323 ALA GLY TYR ILE THR PRO VAL PRO GLY GLY VAL GLY PRO SEQRES 24 B 323 MET THR VAL ALA MET LEU MET LYS ASN THR ILE ILE ALA SEQRES 25 B 323 ALA LYS LYS VAL LEU ARG LEU GLU GLU ARG GLU HET BQF A 401 26 HET PO4 A 402 5 HET BQF A 403 26 HET GOL A 404 6 HET GOL A 405 6 HET PO4 A 406 5 HET BQF B 401 26 HET BQF B 402 26 HET GOL B 403 6 HET GOL B 404 6 HET GOL B 405 6 HETNAM BQF 4-(5-OXO-1,5-DIHYDRO-2H-[1]BENZOPYRANO[3,4-C]PYRIDINE- HETNAM 2 BQF 3(4H)-CARBONYL)BENZOIC ACID HETNAM PO4 PHOSPHATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 BQF 4(C20 H15 N O5) FORMUL 4 PO4 2(O4 P 3-) FORMUL 6 GOL 5(C3 H8 O3) FORMUL 14 HOH *141(H2 O) HELIX 1 AA1 SER A 41 SER A 63 1 23 HELIX 2 AA2 ASN A 78 VAL A 95 1 18 HELIX 3 AA3 SER A 109 ASP A 123 1 15 HELIX 4 AA4 ASP A 140 VAL A 148 1 9 HELIX 5 AA5 HIS A 158 LEU A 167 1 10 HELIX 6 AA6 PRO A 174 THR A 187 1 14 HELIX 7 AA7 VAL A 205 THR A 215 1 11 HELIX 8 AA8 PRO A 236 ILE A 245 1 10 HELIX 9 AA9 ASP A 294 ARG A 299 1 6 HELIX 10 AB1 GLY A 311 LYS A 330 1 20 HELIX 11 AB2 SER B 41 SER B 63 1 23 HELIX 12 AB3 ASN B 78 VAL B 95 1 18 HELIX 13 AB4 SER B 109 ASP B 123 1 15 HELIX 14 AB5 ASP B 140 VAL B 148 1 9 HELIX 15 AB6 SER B 149 ASP B 153 5 5 HELIX 16 AB7 HIS B 158 LEU B 167 1 10 HELIX 17 AB8 PRO B 174 THR B 187 1 14 HELIX 18 AB9 VAL B 205 THR B 215 1 11 HELIX 19 AC1 PRO B 236 ILE B 245 1 10 HELIX 20 AC2 ASP B 294 ALA B 302 1 9 HELIX 21 AC3 GLY B 311 LYS B 330 1 20 SHEET 1 AA112 VAL A 38 VAL A 39 0 SHEET 2 AA112 TYR A 304 ILE A 305 1 O ILE A 305 N VAL A 38 SHEET 3 AA112 ALA A 270 ASP A 273 1 N VAL A 271 O TYR A 304 SHEET 4 AA112 ILE A 249 SER A 252 1 N VAL A 250 O ALA A 270 SHEET 5 AA112 ASN A 195 ALA A 199 1 N VAL A 197 O ILE A 251 SHEET 6 AA112 THR A 227 SER A 231 1 O THR A 229 N VAL A 198 SHEET 7 AA112 THR B 227 SER B 231 -1 O ILE B 230 N VAL A 228 SHEET 8 AA112 ASN B 195 ALA B 199 1 N VAL B 196 O THR B 229 SHEET 9 AA112 ILE B 249 SER B 252 1 O ILE B 251 N VAL B 197 SHEET 10 AA112 ALA B 270 ASP B 273 1 O ALA B 270 N VAL B 250 SHEET 11 AA112 TYR B 304 ILE B 305 1 O TYR B 304 N VAL B 271 SHEET 12 AA112 VAL B 38 VAL B 39 1 N VAL B 38 O ILE B 305 SHEET 1 AA2 3 ASN A 98 LYS A 104 0 SHEET 2 AA2 3 HIS A 69 VAL A 75 1 N LEU A 70 O ASN A 98 SHEET 3 AA2 3 GLY A 128 VAL A 131 1 O GLY A 128 N SER A 71 SHEET 1 AA3 2 ASN A 277 VAL A 279 0 SHEET 2 AA3 2 LYS A 288 VAL A 290 -1 O VAL A 290 N ASN A 277 SHEET 1 AA4 3 ASN B 98 LYS B 104 0 SHEET 2 AA4 3 HIS B 69 VAL B 75 1 N LEU B 70 O ASN B 98 SHEET 3 AA4 3 GLY B 128 VAL B 131 1 O GLY B 128 N SER B 71 CISPEP 1 LEU A 133 PRO A 134 0 6.38 CISPEP 2 VAL A 308 PRO A 309 0 -0.73 CISPEP 3 LEU B 133 PRO B 134 0 0.82 CISPEP 4 VAL B 308 PRO B 309 0 5.38 SITE 1 AC1 11 TYR A 84 ASN A 87 LYS A 88 GLN A 132 SITE 2 AC1 11 PRO A 309 GLY A 310 GLY A 313 PRO A 314 SITE 3 AC1 11 VAL A 317 HOH A 526 HOH A 531 SITE 1 AC2 9 ARG A 201 ARG A 233 HOH A 501 HOH A 540 SITE 2 AC2 9 HOH A 543 HOH A 548 HOH A 557 ASP B 216 SITE 3 AC2 9 HIS B 219 SITE 1 AC3 10 GLY A 200 SER A 231 HIS A 232 ARG A 233 SITE 2 AC3 10 THR A 235 LYS A 237 LEU A 240 ALA A 254 SITE 3 AC3 10 ILE A 256 LEU A 259 SITE 1 AC4 4 GLU A 141 ASN A 204 GOL A 405 HOH A 563 SITE 1 AC5 6 GLU A 141 ARG A 142 PHE A 157 GOL A 404 SITE 2 AC5 6 LEU B 167 GOL B 403 SITE 1 AC6 5 ASP A 216 HIS A 219 ARG B 201 ARG B 233 SITE 2 AC6 5 HOH B 531 SITE 1 AC7 10 TYR B 84 ASN B 87 LYS B 88 GLN B 132 SITE 2 AC7 10 PRO B 309 GLY B 310 GLY B 313 PRO B 314 SITE 3 AC7 10 VAL B 317 HOH B 537 SITE 1 AC8 10 ALA B 199 GLY B 200 SER B 231 HIS B 232 SITE 2 AC8 10 ARG B 233 THR B 235 LYS B 237 LEU B 240 SITE 3 AC8 10 ALA B 254 LEU B 259 SITE 1 AC9 6 GOL A 405 LEU B 167 ASP B 168 GLN B 169 SITE 2 AC9 6 HIS B 219 GLU B 220 SITE 1 AD1 6 GLU B 141 PHE B 157 GOL B 405 HOH B 514 SITE 2 AD1 6 HOH B 520 HOH B 547 SITE 1 AD2 4 GLU B 141 ARG B 142 PHE B 157 GOL B 404 CRYST1 116.424 116.424 113.178 90.00 90.00 120.00 P 65 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008589 0.004959 0.000000 0.00000 SCALE2 0.000000 0.009918 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008836 0.00000