HEADER TRANSCRIPTION 20-FEB-19 6JIE TITLE YAEO BOUND TO MAGNESIUM FROM VIBRIO CHOLERAE O395 COMPND MOL_ID: 1; COMPND 2 MOLECULE: YAEO; COMPND 3 CHAIN: B, A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE SEROTYPE O1 (STRAIN ATCC 39541 SOURCE 3 / CLASSICAL OGAWA 395 / O395); SOURCE 4 ORGANISM_TAXID: 345073; SOURCE 5 STRAIN: ATCC 39541 / CLASSICAL OGAWA 395 / O395; SOURCE 6 GENE: VC0395_0290; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS RHO SPECIFIC INHIBITOR OF TRANSCRIPTION TERMINATION, RNA BINDING, KEYWDS 2 TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR K.PAL,M.YADAV,U.SEN REVDAT 3 22-NOV-23 6JIE 1 LINK REVDAT 2 01-JAN-20 6JIE 1 JRNL REVDAT 1 11-DEC-19 6JIE 0 JRNL AUTH K.PAL,M.YADAV,S.JAIN,B.GHOSH,R.SEN,U.SEN JRNL TITL VIBRIO CHOLERAE YAEO IS A STRUCTURAL HOMOLOGUE OF RNA JRNL TITL 2 CHAPERONE HFQ THAT INHIBITS RHO-DEPENDENT TRANSCRIPTION JRNL TITL 3 TERMINATION BY DISSOCIATING ITS HEXAMERIC STATE. JRNL REF J.MOL.BIOL. V. 431 4749 2019 JRNL REFN ESSN 1089-8638 JRNL PMID 31628950 JRNL DOI 10.1016/J.JMB.2019.09.019 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.48 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 14749 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 737 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.4768 - 2.9896 0.98 2854 159 0.1589 0.1787 REMARK 3 2 2.9896 - 2.3743 0.98 2823 163 0.1797 0.2316 REMARK 3 3 2.3743 - 2.0745 0.97 2832 149 0.1625 0.2314 REMARK 3 4 2.0745 - 1.8850 0.97 2832 132 0.1647 0.2260 REMARK 3 5 1.8850 - 1.7500 0.92 2671 134 0.1778 0.2306 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.220 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.82 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 1294 REMARK 3 ANGLE : 0.807 1718 REMARK 3 CHIRALITY : 0.052 188 REMARK 3 PLANARITY : 0.004 220 REMARK 3 DIHEDRAL : 15.631 764 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 5 THROUGH 39 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.0756 9.1477 -8.7573 REMARK 3 T TENSOR REMARK 3 T11: 0.1063 T22: 0.0898 REMARK 3 T33: 0.0993 T12: 0.0114 REMARK 3 T13: -0.0150 T23: 0.0032 REMARK 3 L TENSOR REMARK 3 L11: 3.0083 L22: 2.7620 REMARK 3 L33: 3.7774 L12: 0.6684 REMARK 3 L13: -0.7505 L23: -0.3454 REMARK 3 S TENSOR REMARK 3 S11: 0.0431 S12: 0.0797 S13: -0.3154 REMARK 3 S21: 0.0637 S22: -0.0311 S23: -0.1319 REMARK 3 S31: 0.2840 S32: 0.2185 S33: -0.0458 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 40 THROUGH 54 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.2845 11.1250 -16.9103 REMARK 3 T TENSOR REMARK 3 T11: 0.0918 T22: 0.1131 REMARK 3 T33: 0.0654 T12: 0.0045 REMARK 3 T13: 0.0049 T23: 0.0235 REMARK 3 L TENSOR REMARK 3 L11: 4.7552 L22: 7.5483 REMARK 3 L33: 5.0737 L12: -1.0479 REMARK 3 L13: -0.4479 L23: 4.7625 REMARK 3 S TENSOR REMARK 3 S11: 0.0713 S12: 0.4102 S13: -0.0734 REMARK 3 S21: -0.5051 S22: -0.0742 S23: 0.0544 REMARK 3 S31: -0.3213 S32: -0.1090 S33: -0.0017 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 55 THROUGH 68 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.6016 11.5894 -14.2062 REMARK 3 T TENSOR REMARK 3 T11: 0.1038 T22: 0.1325 REMARK 3 T33: 0.0797 T12: -0.0064 REMARK 3 T13: 0.0098 T23: -0.0213 REMARK 3 L TENSOR REMARK 3 L11: 4.0436 L22: 2.2664 REMARK 3 L33: 4.7848 L12: -0.3189 REMARK 3 L13: 0.7573 L23: -1.4194 REMARK 3 S TENSOR REMARK 3 S11: 0.1014 S12: 0.4053 S13: -0.1962 REMARK 3 S21: -0.1337 S22: -0.0709 S23: 0.0042 REMARK 3 S31: 0.0017 S32: 0.3086 S33: -0.0345 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 69 THROUGH 81 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.9814 10.4658 -2.4349 REMARK 3 T TENSOR REMARK 3 T11: 0.1117 T22: 0.1245 REMARK 3 T33: 0.1005 T12: 0.0003 REMARK 3 T13: -0.0356 T23: 0.0147 REMARK 3 L TENSOR REMARK 3 L11: 5.8645 L22: 5.8787 REMARK 3 L33: 5.6225 L12: 1.0481 REMARK 3 L13: 0.1638 L23: -2.0851 REMARK 3 S TENSOR REMARK 3 S11: 0.1035 S12: -0.1013 S13: -0.3855 REMARK 3 S21: 0.1945 S22: -0.0702 S23: -0.2652 REMARK 3 S31: 0.2022 S32: 0.4249 S33: 0.0322 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 5 THROUGH 39 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.7415 23.3672 4.7520 REMARK 3 T TENSOR REMARK 3 T11: 0.1182 T22: 0.0826 REMARK 3 T33: 0.0888 T12: -0.0064 REMARK 3 T13: -0.0037 T23: 0.0175 REMARK 3 L TENSOR REMARK 3 L11: 3.5422 L22: 3.3360 REMARK 3 L33: 3.0117 L12: -0.5364 REMARK 3 L13: -0.4507 L23: 0.3445 REMARK 3 S TENSOR REMARK 3 S11: 0.1222 S12: -0.0125 S13: -0.2285 REMARK 3 S21: -0.0469 S22: -0.1809 S23: -0.0333 REMARK 3 S31: 0.2603 S32: 0.0285 S33: 0.0336 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 40 THROUGH 54 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.4421 28.4410 12.8086 REMARK 3 T TENSOR REMARK 3 T11: 0.1630 T22: 0.1379 REMARK 3 T33: 0.1102 T12: -0.0258 REMARK 3 T13: -0.0082 T23: 0.0242 REMARK 3 L TENSOR REMARK 3 L11: 3.4364 L22: 3.1809 REMARK 3 L33: 8.1082 L12: -1.5499 REMARK 3 L13: 1.9783 L23: -4.9274 REMARK 3 S TENSOR REMARK 3 S11: -0.0748 S12: -0.3724 S13: 0.1056 REMARK 3 S21: 0.6177 S22: -0.0148 S23: -0.2504 REMARK 3 S31: -0.3710 S32: -0.1093 S33: 0.0613 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 55 THROUGH 68 ) REMARK 3 ORIGIN FOR THE GROUP (A): -39.4114 24.6713 10.1966 REMARK 3 T TENSOR REMARK 3 T11: 0.1064 T22: 0.1236 REMARK 3 T33: 0.1004 T12: -0.0116 REMARK 3 T13: 0.0105 T23: 0.0237 REMARK 3 L TENSOR REMARK 3 L11: 4.0984 L22: 3.1515 REMARK 3 L33: 5.2353 L12: 1.0282 REMARK 3 L13: 0.2221 L23: 1.4675 REMARK 3 S TENSOR REMARK 3 S11: 0.0732 S12: -0.2485 S13: -0.0847 REMARK 3 S21: 0.1969 S22: -0.1462 S23: 0.1613 REMARK 3 S31: 0.1071 S32: -0.3220 S33: 0.0604 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 69 THROUGH 81 ) REMARK 3 ORIGIN FOR THE GROUP (A): -42.6899 21.1261 -1.5669 REMARK 3 T TENSOR REMARK 3 T11: 0.1554 T22: 0.1979 REMARK 3 T33: 0.1263 T12: -0.0786 REMARK 3 T13: -0.0318 T23: -0.0416 REMARK 3 L TENSOR REMARK 3 L11: 5.5929 L22: 4.2110 REMARK 3 L33: 4.5505 L12: -0.4114 REMARK 3 L13: 0.3978 L23: 2.2801 REMARK 3 S TENSOR REMARK 3 S11: -0.1591 S12: 0.4841 S13: -0.3064 REMARK 3 S21: -0.3660 S22: 0.0075 S23: 0.0871 REMARK 3 S31: -0.0845 S32: -0.1830 S33: 0.1030 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6JIE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-MAR-19. REMARK 100 THE DEPOSITION ID IS D_1300011178. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5-9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : RRCAT INDUS-2 REMARK 200 BEAMLINE : PX-BL21 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.14 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14765 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 40.920 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.29400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4PNO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MAGNESIUM CHLORIDE HEXAHYDRATE, REMARK 280 0.1M TRIS HYDROCHLORIDE PH 8.5, 30% (W/V) POLYETHYLENE GLYCOL 4, REMARK 280 000., VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 VAL B 2 REMARK 465 SER B 3 REMARK 465 CYS B 4 REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 SER A 3 REMARK 465 CYS A 4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER B 76 -80.88 -101.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 52 OE2 REMARK 620 2 HOH B 326 O 77.2 REMARK 620 3 HOH B 348 O 83.1 82.3 REMARK 620 4 HOH B 364 O 96.9 97.1 179.3 REMARK 620 5 HOH B 366 O 110.3 172.0 101.1 79.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 61 OD1 REMARK 620 2 HOH B 323 O 91.7 REMARK 620 3 HOH B 384 O 112.1 93.6 REMARK 620 4 HOH A 427 O 84.7 87.5 163.1 REMARK 620 5 HOH A 434 O 162.5 80.3 84.1 79.4 REMARK 620 6 HOH A 463 O 101.5 164.5 89.0 85.7 84.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 304 O REMARK 620 2 HOH B 306 O 88.4 REMARK 620 3 HOH B 346 O 91.3 84.2 REMARK 620 4 ASP A 61 OD2 90.4 169.5 85.4 REMARK 620 5 HOH A 442 O 88.0 95.7 179.3 94.8 REMARK 620 6 HOH A 494 O 170.5 82.3 89.4 99.0 91.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 333 O REMARK 620 2 GLU A 52 OE1 80.1 REMARK 620 3 HOH A 405 O 54.0 132.4 REMARK 620 4 HOH A 456 O 93.1 103.2 92.2 REMARK 620 5 HOH A 469 O 89.6 84.3 83.6 172.4 REMARK 620 6 HOH A 476 O 175.7 103.8 121.8 87.8 89.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 302 DBREF1 6JIE B 1 81 UNP A0A0H3ADN9_VIBC3 DBREF2 6JIE B A0A0H3ADN9 1 81 DBREF1 6JIE A 1 81 UNP A0A0H3ADN9_VIBC3 DBREF2 6JIE A A0A0H3ADN9 1 81 SEQRES 1 B 81 MET VAL SER CYS SER GLN TYR ASP TYR ILE GLU LEU ALA SEQRES 2 B 81 CYS LEU PHE HIS LEU PRO VAL LYS LEU THR MET LYS SER SEQRES 3 B 81 GLY GLU VAL TYR TYR GLY VAL ALA ALA ASP THR GLN ARG SEQRES 4 B 81 ASN SER GLN LYS GLN GLU CYS ILE ALA LEU ARG GLY GLU SEQRES 5 B 81 GLU GLU THR TRP LEU LEU GLU THR ASP GLN LEU SER SER SEQRES 6 B 81 MET GLU ALA LEU SER GLU GLN PRO HIS PHE SER VAL ILE SEQRES 7 B 81 HIS PHE LYS SEQRES 1 A 81 MET VAL SER CYS SER GLN TYR ASP TYR ILE GLU LEU ALA SEQRES 2 A 81 CYS LEU PHE HIS LEU PRO VAL LYS LEU THR MET LYS SER SEQRES 3 A 81 GLY GLU VAL TYR TYR GLY VAL ALA ALA ASP THR GLN ARG SEQRES 4 A 81 ASN SER GLN LYS GLN GLU CYS ILE ALA LEU ARG GLY GLU SEQRES 5 A 81 GLU GLU THR TRP LEU LEU GLU THR ASP GLN LEU SER SER SEQRES 6 A 81 MET GLU ALA LEU SER GLU GLN PRO HIS PHE SER VAL ILE SEQRES 7 A 81 HIS PHE LYS HET MG B 201 1 HET MG B 202 1 HET MG A 301 1 HET MG A 302 1 HETNAM MG MAGNESIUM ION FORMUL 3 MG 4(MG 2+) FORMUL 7 HOH *219(H2 O) HELIX 1 AA1 ASP B 8 PHE B 16 1 9 HELIX 2 AA2 ASP A 8 PHE A 16 1 9 SHEET 1 AA1 6 THR B 55 GLU B 59 0 SHEET 2 AA1 6 GLU B 45 ARG B 50 -1 N LEU B 49 O TRP B 56 SHEET 3 AA1 6 VAL B 29 ARG B 39 -1 N ASP B 36 O ALA B 48 SHEET 4 AA1 6 PRO B 19 MET B 24 -1 N LEU B 22 O TYR B 30 SHEET 5 AA1 6 LEU B 63 ALA B 68 -1 O SER B 64 N THR B 23 SHEET 6 AA1 6 VAL B 77 HIS B 79 -1 O ILE B 78 N MET B 66 SHEET 1 AA2 6 THR A 55 GLU A 59 0 SHEET 2 AA2 6 GLU A 45 ARG A 50 -1 N LEU A 49 O TRP A 56 SHEET 3 AA2 6 VAL A 29 ARG A 39 -1 N ASP A 36 O ALA A 48 SHEET 4 AA2 6 PRO A 19 MET A 24 -1 N LEU A 22 O TYR A 30 SHEET 5 AA2 6 LEU A 63 ALA A 68 -1 O SER A 64 N THR A 23 SHEET 6 AA2 6 VAL A 77 HIS A 79 -1 O ILE A 78 N MET A 66 LINK OE2 GLU B 52 MG MG B 202 1555 1555 2.14 LINK OD1 ASP B 61 MG MG B 201 1555 1555 2.22 LINK MG MG B 201 O HOH B 323 1555 1555 2.27 LINK MG MG B 201 O HOH B 384 1555 1555 2.12 LINK MG MG B 201 O HOH A 427 1555 1544 2.18 LINK MG MG B 201 O HOH A 434 1555 1544 2.29 LINK MG MG B 201 O HOH A 463 1555 1544 2.21 LINK MG MG B 202 O HOH B 326 1555 1555 2.19 LINK MG MG B 202 O HOH B 348 1555 1565 2.32 LINK MG MG B 202 O HOH B 364 1555 1555 2.16 LINK MG MG B 202 O HOH B 366 1555 1565 2.07 LINK O HOH B 304 MG MG A 301 1556 1555 2.23 LINK O HOH B 306 MG MG A 301 1556 1555 2.24 LINK O HOH B 333 MG MG A 302 1565 1555 2.28 LINK O HOH B 346 MG MG A 301 1556 1555 2.24 LINK OE1 GLU A 52 MG MG A 302 1555 1555 2.12 LINK OD2 ASP A 61 MG MG A 301 1555 1555 2.15 LINK MG MG A 301 O HOH A 442 1555 1555 2.16 LINK MG MG A 301 O HOH A 494 1555 1555 2.22 LINK MG MG A 302 O HOH A 405 1555 1565 2.74 LINK MG MG A 302 O HOH A 456 1555 1555 2.08 LINK MG MG A 302 O HOH A 469 1555 1565 2.35 LINK MG MG A 302 O HOH A 476 1555 1565 2.29 SITE 1 AC1 6 HOH A 427 HOH A 434 HOH A 463 ASP B 61 SITE 2 AC1 6 HOH B 323 HOH B 384 SITE 1 AC2 5 GLU B 52 HOH B 326 HOH B 348 HOH B 364 SITE 2 AC2 5 HOH B 366 SITE 1 AC3 6 ASP A 61 HOH A 442 HOH A 494 HOH B 304 SITE 2 AC3 6 HOH B 306 HOH B 346 SITE 1 AC4 6 GLU A 52 HOH A 405 HOH A 456 HOH A 469 SITE 2 AC4 6 HOH A 476 HOH B 333 CRYST1 28.936 34.356 42.371 90.07 104.48 105.49 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.034559 0.009577 0.009650 0.00000 SCALE2 0.000000 0.030204 0.002206 0.00000 SCALE3 0.000000 0.000000 0.024441 0.00000