HEADER VIRUS 25-FEB-19 6JJA TITLE CRYO-EM STRUCTURE OF GIANT FRESHWATER PRAWN MACROBRACHIUM ROSENBERGII TITLE 2 EXTRA SMALL VIRUS (XSV) VLP COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOCAPSID PROTEIN CP17; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EXTRA SMALL VIRUS; SOURCE 3 ORGANISM_TAXID: 230604; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PETDUET-1 KEYWDS GIANT FRESHWATER PRAWN MACROBRACHIUM ROSENBERGII, T=1 ICOSAHEDRAL KEYWDS 2 PARTICLE, SINGLE-STRANDED RNA SATELLITE VIRUS, CANONICAL JELLY-ROLL KEYWDS 3 BETA-BARREL FOLD, VIRUS LIKE PARTICLE, VIRUS EXPDTA ELECTRON MICROSCOPY AUTHOR W.H.CHANG,C.H.WANG,H.H.LIN,S.Y.LIN,S.C.CHONG,Y.Y.WU REVDAT 2 27-MAR-24 6JJA 1 REMARK REVDAT 1 17-JUL-19 6JJA 0 JRNL AUTH W.H.CHANG,C.H.WANG,H.H.LIN,S.Y.LIN,S.C.CHONG,Y.Y.WU JRNL TITL CRYO-EM STRUCTURE OF GIANT FRESHWATER PRAWN MACROBRACHIUM JRNL TITL 2 ROSENBERGII EXTRA SMALL VIRUS (XSV) VLP JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.91 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : EPU, RELION, UCSF CHIMERA, RELION, REMARK 3 RELION, RELION, RELION, PHENIX REMARK 3 RECONSTRUCTION SCHEMA : BACK PROJECTION REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : AB INITIO MODEL REMARK 3 REFINEMENT TARGET : CORRELATION COEFFICIENT REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.910 REMARK 3 NUMBER OF PARTICLES : 10755 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING ONLY REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 6JJA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-MAR-19. REMARK 100 THE DEPOSITION ID IS D_1300011218. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : VIRUSES REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 10.00 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 8.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 998 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TALOS ARCTICA REMARK 245 DETECTOR TYPE : FEI FALCON III (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 10000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 120000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 200 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 ICOSAHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = I). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT2 2 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT3 2 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT1 3 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT2 3 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 3 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 4 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 4 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 4 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 5 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 5 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT3 5 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 7 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 7 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 7 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT1 8 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 8 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 8 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 9 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT2 9 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 9 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 10 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT2 10 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 10 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 11 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 12 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 12 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT3 12 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 13 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 13 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 13 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 14 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT2 14 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 14 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 15 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT2 15 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT3 15 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 16 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 16 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 16 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 17 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT2 17 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 17 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 18 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT2 18 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 18 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 19 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 19 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 19 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 20 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 20 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 20 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 21 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 21 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 21 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 22 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT2 22 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT3 22 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT1 23 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 23 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT3 23 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 24 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 24 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 24 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 25 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT2 25 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 25 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT1 26 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 26 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 26 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 27 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT2 27 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 27 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 28 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 28 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 28 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 29 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 29 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT3 29 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 30 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT2 30 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT3 30 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 31 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 31 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 31 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 32 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 32 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 32 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT1 33 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 33 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 33 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 34 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 34 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT3 34 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 35 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 35 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT3 35 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT1 36 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 36 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 36 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 37 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 37 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT3 37 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 38 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 38 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT3 38 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 39 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 39 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 39 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 40 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 40 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 40 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 41 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 41 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 41 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 42 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT2 42 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT3 42 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT1 43 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 43 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 43 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT1 44 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 44 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 44 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 45 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT2 45 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT3 45 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 46 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 46 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 46 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 47 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 47 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT3 47 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 48 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 48 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 48 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 49 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 49 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 49 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT1 50 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 50 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT3 50 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT1 51 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 51 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 51 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 52 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT2 52 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 52 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 53 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 53 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 53 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 54 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 54 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 54 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT1 55 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT2 55 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 55 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT1 56 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 56 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 56 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 57 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 57 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 57 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT1 58 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 58 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 58 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT1 59 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 59 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 59 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 60 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 60 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 60 0.309017 0.809017 -0.500000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 LYS A 3 REMARK 465 ARG A 4 REMARK 465 ILE A 5 REMARK 465 ASN A 6 REMARK 465 ASN A 7 REMARK 465 ASN A 8 REMARK 465 ARG A 9 REMARK 465 ARG A 10 REMARK 465 THR A 11 REMARK 465 MET A 12 REMARK 465 ARG A 13 REMARK 465 SER A 14 REMARK 465 ARG A 15 REMARK 465 ARG A 16 REMARK 465 GLY A 17 REMARK 465 ARG A 18 REMARK 465 GLY A 19 REMARK 465 ARG A 20 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LYS A 87 HG SER A 172 1.57 REMARK 500 OD1 ASP A 60 H LEU A 61 1.58 REMARK 500 OE2 GLU A 93 OG1 THR A 168 1.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 61 71.58 61.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 171 OD2 REMARK 620 2 GLU A 173 O 92.2 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-9705 RELATED DB: EMDB DBREF 6JJA A 1 174 UNP Q15BP7 Q15BP7_9VIRU 1 174 SEQRES 1 A 174 MET ASN LYS ARG ILE ASN ASN ASN ARG ARG THR MET ARG SEQRES 2 A 174 SER ARG ARG GLY ARG GLY ARG THR MET GLY SER ASN LEU SEQRES 3 A 174 ILE PRO TYR ALA ASN SER PRO VAL PRO ILE PRO TYR THR SEQRES 4 A 174 PRO PRO VAL THR PRO VAL THR VAL ILE GLY ASN PRO ARG SEQRES 5 A 174 LYS THR THR TRP ILE ASP ILE ASP LEU SER SER GLU GLU SEQRES 6 A 174 SER GLY ILE TYR THR LEU THR VAL GLY SER TYR ARG ASN SEQRES 7 A 174 ARG ILE THR LYS LEU GLY PRO SER LYS PRO ASN PHE ILE SEQRES 8 A 174 ILE GLU LYS VAL ALA ALA TYR ALA ALA PRO GLY ASP TYR SEQRES 9 A 174 LYS VAL VAL LEU ASN ASP PHE LYS THR GLY ILE GLN VAL SEQRES 10 A 174 VAL ASP GLU GLY SER TYR ALA HIS ARG ALA ALA ALA GLY SEQRES 11 A 174 ILE LEU TYR PRO PRO ALA ALA GLN MET PHE TYR GLY ILE SEQRES 12 A 174 SER ALA THR GLY THR LEU ASN THR ILE THR THR THR ALA SEQRES 13 A 174 LYS ASP PRO VAL PRO VAL VAL ARG ALA LEU VAL THR TYR SEQRES 14 A 174 TRP ASP SER GLU GLN HET CA A 201 1 HET CA A 202 1 HETNAM CA CALCIUM ION FORMUL 2 CA 2(CA 2+) HELIX 1 AA1 VAL A 73 THR A 81 1 9 HELIX 2 AA2 LYS A 82 GLY A 84 5 3 SHEET 1 AA1 4 ARG A 52 ILE A 59 0 SHEET 2 AA1 4 VAL A 162 ASP A 171 -1 O TYR A 169 N LYS A 53 SHEET 3 AA1 4 PRO A 88 TYR A 98 -1 N TYR A 98 O VAL A 162 SHEET 4 AA1 4 ALA A 128 LEU A 132 -1 O ALA A 129 N ALA A 97 SHEET 1 AA2 4 ILE A 68 THR A 72 0 SHEET 2 AA2 4 THR A 148 THR A 154 -1 O ILE A 152 N TYR A 69 SHEET 3 AA2 4 TYR A 104 ASP A 110 -1 N VAL A 107 O THR A 153 SHEET 4 AA2 4 GLN A 116 GLY A 121 -1 O VAL A 117 N LEU A 108 LINK OD1 ASN A 31 CA CA A 202 1555 1555 2.87 LINK OD2 ASP A 171 CA CA A 201 1555 1555 2.35 LINK O GLU A 173 CA CA A 201 1555 1555 2.34 SITE 1 AC1 3 ASN A 50 ASP A 171 GLU A 173 SITE 1 AC2 1 ASN A 31 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000