HEADER TRANSFERASE 01-MAR-19 6JKM TITLE CRYSTAL STRUCTURE OF BUBR1 KINASE DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOTIC CHECKPOINT CONTROL PROTEIN KINASE BUB1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PROTEIN KINASE DOMAIN; COMPND 5 SYNONYM: MITOTIC CHECKPOINT SERINE/THREONINE-PROTEIN KINASE BUB1 COMPND 6 BETA; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 GENE: BUBR1, BUB1, CG7838; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS KINASE, MITOTIC CHECKPOINT, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR L.LIN,S.YE,Y.HUANG,X.LIU,R.ZHANG,X.YAO REVDAT 3 22-NOV-23 6JKM 1 LINK REVDAT 2 17-JUL-19 6JKM 1 JRNL REVDAT 1 26-JUN-19 6JKM 0 JRNL AUTH Y.HUANG,L.LIN,X.LIU,S.YE,P.Y.YAO,W.WANG,F.YANG,X.GAO,J.LI, JRNL AUTH 2 Y.ZHANG,J.ZHANG,Z.YANG,X.LIU,Z.YANG,J.ZANG,M.TENG,Z.WANG, JRNL AUTH 3 K.RUAN,X.DING,L.LI,D.W.CLEVELAND,R.ZHANG,X.YAO JRNL TITL BUBR1 PHOSPHORYLATES CENP-E AS A SWITCH ENABLING THE JRNL TITL 2 TRANSITION FROM LATERAL ASSOCIATION TO END-ON CAPTURE OF JRNL TITL 3 SPINDLE MICROTUBULES. JRNL REF CELL RES. V. 29 562 2019 JRNL REFN ISSN 1001-0602 JRNL PMID 31201382 JRNL DOI 10.1038/S41422-019-0178-Z REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.4_1496 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.37 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 84.3 REMARK 3 NUMBER OF REFLECTIONS : 22393 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 1145 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.3720 - 3.8976 0.99 3285 185 0.1565 0.2085 REMARK 3 2 3.8976 - 3.0941 1.00 3177 188 0.1667 0.2148 REMARK 3 3 3.0941 - 2.7031 1.00 3141 170 0.1964 0.2327 REMARK 3 4 2.7031 - 2.4560 0.99 3125 156 0.2007 0.2555 REMARK 3 5 2.4560 - 2.2800 0.90 2823 152 0.2020 0.2550 REMARK 3 6 2.2800 - 2.1456 0.72 2208 141 0.1937 0.2243 REMARK 3 7 2.1456 - 2.0382 0.60 1890 84 0.1868 0.2728 REMARK 3 8 2.0382 - 1.9500 0.51 1599 69 0.2021 0.2719 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.780 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2830 REMARK 3 ANGLE : 1.095 3835 REMARK 3 CHIRALITY : 0.045 422 REMARK 3 PLANARITY : 0.005 480 REMARK 3 DIHEDRAL : 15.223 1057 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1126 THROUGH 1155 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.2348 37.6709 38.6219 REMARK 3 T TENSOR REMARK 3 T11: 0.1612 T22: 0.1659 REMARK 3 T33: 0.1105 T12: 0.1066 REMARK 3 T13: 0.1281 T23: 0.0283 REMARK 3 L TENSOR REMARK 3 L11: 0.7256 L22: 0.6610 REMARK 3 L33: 0.5658 L12: 0.6437 REMARK 3 L13: 0.5760 L23: 0.6065 REMARK 3 S TENSOR REMARK 3 S11: -0.2876 S12: -0.0953 S13: -0.0233 REMARK 3 S21: 0.1342 S22: 0.0579 S23: 0.3580 REMARK 3 S31: -0.1101 S32: -0.0485 S33: -0.5070 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1156 THROUGH 1172 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.7143 28.1971 19.7739 REMARK 3 T TENSOR REMARK 3 T11: 0.1817 T22: 0.1703 REMARK 3 T33: 0.3902 T12: 0.0227 REMARK 3 T13: -0.0421 T23: -0.0454 REMARK 3 L TENSOR REMARK 3 L11: 0.0619 L22: 0.0531 REMARK 3 L33: 0.1303 L12: -0.0202 REMARK 3 L13: -0.0739 L23: 0.0484 REMARK 3 S TENSOR REMARK 3 S11: 0.0708 S12: 0.1885 S13: 0.0567 REMARK 3 S21: -0.1358 S22: -0.1369 S23: 0.2719 REMARK 3 S31: -0.0240 S32: -0.2732 S33: 0.0079 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1173 THROUGH 1199 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.4190 25.2410 17.5152 REMARK 3 T TENSOR REMARK 3 T11: 0.2325 T22: 0.1317 REMARK 3 T33: 0.1941 T12: 0.0390 REMARK 3 T13: -0.0041 T23: -0.0082 REMARK 3 L TENSOR REMARK 3 L11: 0.4622 L22: 0.0776 REMARK 3 L33: 0.0198 L12: -0.0606 REMARK 3 L13: 0.0426 L23: 0.0265 REMARK 3 S TENSOR REMARK 3 S11: 0.0857 S12: 0.1774 S13: -0.3020 REMARK 3 S21: 0.0224 S22: -0.0764 S23: 0.2170 REMARK 3 S31: -0.1614 S32: -0.0759 S33: 0.0015 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1200 THROUGH 1241 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.0567 34.2643 28.3905 REMARK 3 T TENSOR REMARK 3 T11: 0.1341 T22: 0.1076 REMARK 3 T33: 0.1600 T12: 0.0061 REMARK 3 T13: -0.0024 T23: -0.0004 REMARK 3 L TENSOR REMARK 3 L11: 0.0846 L22: 0.1689 REMARK 3 L33: 0.1133 L12: -0.1315 REMARK 3 L13: -0.0431 L23: 0.0816 REMARK 3 S TENSOR REMARK 3 S11: -0.0018 S12: -0.0243 S13: -0.0304 REMARK 3 S21: 0.0583 S22: -0.0155 S23: 0.0280 REMARK 3 S31: -0.0773 S32: -0.0206 S33: 0.0006 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1242 THROUGH 1274 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.5977 18.8328 21.7618 REMARK 3 T TENSOR REMARK 3 T11: 0.1399 T22: 0.1339 REMARK 3 T33: 0.2011 T12: -0.0101 REMARK 3 T13: 0.0321 T23: -0.0111 REMARK 3 L TENSOR REMARK 3 L11: 0.0996 L22: 0.0732 REMARK 3 L33: 0.0953 L12: 0.0421 REMARK 3 L13: 0.0717 L23: 0.0816 REMARK 3 S TENSOR REMARK 3 S11: -0.0881 S12: 0.0984 S13: -0.0331 REMARK 3 S21: 0.0543 S22: 0.0151 S23: 0.0231 REMARK 3 S31: 0.0252 S32: 0.0077 S33: -0.0510 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1275 THROUGH 1335 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.4463 28.1332 29.3452 REMARK 3 T TENSOR REMARK 3 T11: 0.1013 T22: 0.0981 REMARK 3 T33: 0.1035 T12: -0.0064 REMARK 3 T13: -0.0099 T23: 0.0106 REMARK 3 L TENSOR REMARK 3 L11: 0.3146 L22: 0.2992 REMARK 3 L33: 0.3793 L12: -0.1057 REMARK 3 L13: 0.0928 L23: -0.0646 REMARK 3 S TENSOR REMARK 3 S11: -0.1164 S12: 0.0064 S13: -0.0140 REMARK 3 S21: 0.0685 S22: 0.0523 S23: -0.0677 REMARK 3 S31: -0.0697 S32: 0.0698 S33: -0.0620 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1336 THROUGH 1363 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.0029 23.7406 48.8121 REMARK 3 T TENSOR REMARK 3 T11: 0.2585 T22: 0.2441 REMARK 3 T33: 0.1031 T12: 0.0866 REMARK 3 T13: 0.0353 T23: 0.1060 REMARK 3 L TENSOR REMARK 3 L11: 0.6741 L22: 0.1426 REMARK 3 L33: 0.0635 L12: -0.0950 REMARK 3 L13: -0.0631 L23: 0.0870 REMARK 3 S TENSOR REMARK 3 S11: -0.1651 S12: -0.2729 S13: -0.2888 REMARK 3 S21: 0.3514 S22: 0.1202 S23: 0.0706 REMARK 3 S31: -0.0947 S32: 0.0945 S33: 0.0161 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1364 THROUGH 1380 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.0723 20.1467 36.3714 REMARK 3 T TENSOR REMARK 3 T11: 0.1895 T22: 0.1880 REMARK 3 T33: 0.1643 T12: -0.0062 REMARK 3 T13: -0.0353 T23: 0.0269 REMARK 3 L TENSOR REMARK 3 L11: 0.0263 L22: 0.0218 REMARK 3 L33: 0.0665 L12: 0.0035 REMARK 3 L13: 0.0202 L23: -0.0289 REMARK 3 S TENSOR REMARK 3 S11: -0.0629 S12: -0.0682 S13: -0.0875 REMARK 3 S21: 0.1639 S22: -0.0145 S23: -0.0203 REMARK 3 S31: 0.0309 S32: 0.0145 S33: 0.0048 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1381 THROUGH 1397 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.6589 12.0666 44.0307 REMARK 3 T TENSOR REMARK 3 T11: 0.3167 T22: 0.2382 REMARK 3 T33: 0.2536 T12: 0.0765 REMARK 3 T13: -0.0013 T23: 0.1994 REMARK 3 L TENSOR REMARK 3 L11: 0.1121 L22: 0.0708 REMARK 3 L33: 0.0289 L12: -0.0262 REMARK 3 L13: -0.0382 L23: -0.0253 REMARK 3 S TENSOR REMARK 3 S11: -0.0982 S12: 0.0359 S13: -0.2334 REMARK 3 S21: 0.1848 S22: 0.0143 S23: 0.0979 REMARK 3 S31: 0.2036 S32: 0.0403 S33: -0.0519 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1398 THROUGH 1428 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.5934 19.9319 39.6355 REMARK 3 T TENSOR REMARK 3 T11: 0.1806 T22: 0.2297 REMARK 3 T33: 0.1375 T12: 0.0194 REMARK 3 T13: -0.0397 T23: 0.0534 REMARK 3 L TENSOR REMARK 3 L11: 0.6034 L22: 0.3403 REMARK 3 L33: 0.2788 L12: 0.3016 REMARK 3 L13: -0.2130 L23: -0.0686 REMARK 3 S TENSOR REMARK 3 S11: -0.0906 S12: -0.2206 S13: -0.1486 REMARK 3 S21: 0.1865 S22: -0.0919 S23: -0.2087 REMARK 3 S31: -0.0322 S32: 0.1596 S33: -0.2126 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1429 THROUGH 1459 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.4881 22.6958 21.3252 REMARK 3 T TENSOR REMARK 3 T11: 0.1184 T22: 0.2256 REMARK 3 T33: 0.1663 T12: -0.0362 REMARK 3 T13: 0.0253 T23: 0.0028 REMARK 3 L TENSOR REMARK 3 L11: 0.1056 L22: 0.1926 REMARK 3 L33: 0.2090 L12: -0.1346 REMARK 3 L13: 0.1050 L23: -0.1728 REMARK 3 S TENSOR REMARK 3 S11: -0.0740 S12: 0.1098 S13: -0.0888 REMARK 3 S21: -0.0361 S22: -0.0234 S23: -0.1677 REMARK 3 S31: -0.1461 S32: 0.1618 S33: -0.1743 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6JKM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-MAR-19. REMARK 100 THE DEPOSITION ID IS D_1300011267. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97930 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26399 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.10400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.57600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4R8Q REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4% PEG 3000, 0.1M BIS-TRIS PROPANE PH REMARK 280 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.66650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.11600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.98950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.11600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.66650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.98950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1120 REMARK 465 ALA A 1121 REMARK 465 MET A 1122 REMARK 465 ASP A 1123 REMARK 465 PRO A 1124 REMARK 465 GLU A 1125 REMARK 465 LYS A 1460 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1749 O HOH A 1837 1.80 REMARK 500 O HOH A 1739 O HOH A 1813 1.91 REMARK 500 OE1 GLU A 1251 O HOH A 1601 1.94 REMARK 500 O HOH A 1713 O HOH A 1847 2.08 REMARK 500 ND2 ASN A 1270 O HOH A 1602 2.10 REMARK 500 O HOH A 1688 O HOH A 1815 2.12 REMARK 500 O HOH A 1829 O HOH A 1838 2.14 REMARK 500 NE2 GLN A 1459 O HOH A 1603 2.17 REMARK 500 O HOH A 1787 O HOH A 1796 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1622 O HOH A 1813 3555 1.94 REMARK 500 O HOH A 1770 O HOH A 1788 3555 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A1171 -122.07 54.29 REMARK 500 SER A1178 -72.10 -95.63 REMARK 500 ASP A1301 43.73 -142.96 REMARK 500 ASP A1326 73.45 65.82 REMARK 500 THR A1363 -100.90 -135.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A1306 OD1 REMARK 620 2 ASP A1326 OD1 95.3 REMARK 620 3 ADP A1501 O3B 177.4 86.8 REMARK 620 4 ADP A1501 O2A 92.2 97.5 85.9 REMARK 620 5 HOH A1683 O 89.6 173.4 88.5 86.7 REMARK 620 6 HOH A1701 O 94.1 87.9 87.6 171.3 87.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1503 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A1326 OD1 REMARK 620 2 ASP A1326 OD2 58.7 REMARK 620 3 ADP A1501 O2B 85.9 89.0 REMARK 620 4 HOH A1659 O 81.1 80.2 166.2 REMARK 620 5 HOH A1783 O 92.7 149.5 100.1 85.3 REMARK 620 6 HOH A1805 O 153.1 101.2 113.2 77.6 101.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 1501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 1504 DBREF 6JKM A 1127 1460 UNP O76755 O76755_DROME 1128 1461 SEQADV 6JKM GLY A 1120 UNP O76755 EXPRESSION TAG SEQADV 6JKM ALA A 1121 UNP O76755 EXPRESSION TAG SEQADV 6JKM MET A 1122 UNP O76755 EXPRESSION TAG SEQADV 6JKM ASP A 1123 UNP O76755 EXPRESSION TAG SEQADV 6JKM PRO A 1124 UNP O76755 EXPRESSION TAG SEQADV 6JKM GLU A 1125 UNP O76755 EXPRESSION TAG SEQADV 6JKM PHE A 1126 UNP O76755 EXPRESSION TAG SEQRES 1 A 341 GLY ALA MET ASP PRO GLU PHE ASN PRO PHE ASN VAL GLU SEQRES 2 A 341 LEU ILE SER SER LEU LEU GLU SER ILE ASP PHE SER MET SEQRES 3 A 341 TYR ILE GLU LYS LEU PRO HIS CYS GLN LEU VAL GLY HIS SEQRES 4 A 341 VAL LYS ARG LEU HIS PRO ASN THR HIS LEU GLU VAL HIS SEQRES 5 A 341 ASN GLU LYS PHE GLU VAL SER LYS MET ILE GLY LYS GLY SEQRES 6 A 341 ALA TYR GLY SER VAL TYR VAL GLY LYS HIS LEU LYS SER SEQRES 7 A 341 GLY LYS LYS VAL ALA LEU LYS GLN GLU ARG PRO THR ASN SEQRES 8 A 341 TYR TRP GLU PHE TYR ILE CYS LEU GLU ILE HIS SER ARG SEQRES 9 A 341 LEU THR SER GLU GLN MET ILE PRO SER TYR ALA HIS ILE SEQRES 10 A 341 ASP TYR ALA LEU VAL GLY ASN ASN SER SER VAL TYR ILE SEQRES 11 A 341 SER GLU PHE SER ASP TYR GLY SER LEU ILE GLY VAL CYS SEQRES 12 A 341 ASN LYS VAL LYS SER VAL THR ASN ARG ASN MET ASP GLU SEQRES 13 A 341 TYR VAL VAL MET HIS LEU SER CYS GLN MET LEU ASP ILE SEQRES 14 A 341 VAL ASP HIS LEU HIS ALA MET GLY ILE ILE HIS ALA ASP SEQRES 15 A 341 ILE LYS PRO ASP ASN PHE LEU LEU MET LYS PRO ILE CYS SEQRES 16 A 341 ALA ASP PRO ASN GLU VAL SER LEU GLN LEU ILE ASP PHE SEQRES 17 A 341 GLY VAL SER ILE ASP MET LYS LEU PHE PRO ASP ASN GLN SEQRES 18 A 341 THR PHE ASN TYR VAL HIS HIS ASP ASP LEU PHE LYS CYS SEQRES 19 A 341 ILE GLU MET ARG THR GLY ARG PRO TRP THR TYR GLN LEU SEQRES 20 A 341 ASP LEU TYR GLY LEU VAL SER VAL MET HIS VAL LEU LEU SEQRES 21 A 341 PHE GLY ARG TYR MET GLU VAL VAL GLN ARG SER PRO SER SEQRES 22 A 341 THR ILE TRP MET PRO LYS THR ASN VAL PRO ARG TYR PHE SEQRES 23 A 341 GLN ARG THR MET TRP GLU ASN ILE PHE ARG THR LEU LEU SEQRES 24 A 341 ASN ILE ARG ASP CYS ARG THR MET PRO ASN LEU GLN GLN SEQRES 25 A 341 LEU ARG THR GLN LEU LYS CYS ALA LEU ALA GLU LYS GLU SEQRES 26 A 341 LYS TYR VAL ALA GLU ALA ILE SER LYS PHE ASN THR ILE SEQRES 27 A 341 LEU GLN LYS HET ADP A1501 27 HET MG A1502 1 HET MG A1503 1 HET GOL A1504 6 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ADP C10 H15 N5 O10 P2 FORMUL 3 MG 2(MG 2+) FORMUL 5 GOL C3 H8 O3 FORMUL 6 HOH *255(H2 O) HELIX 1 AA1 ASN A 1130 ILE A 1141 1 12 HELIX 2 AA2 ASP A 1142 GLU A 1148 1 7 HELIX 3 AA3 ASN A 1210 LEU A 1224 1 15 HELIX 4 AA4 MET A 1229 TYR A 1233 5 5 HELIX 5 AA5 SER A 1257 ASN A 1270 1 14 HELIX 6 AA6 ASP A 1274 MET A 1295 1 22 HELIX 7 AA7 LYS A 1303 ASP A 1305 5 3 HELIX 8 AA8 LYS A 1334 PHE A 1336 5 3 HELIX 9 AA9 ASP A 1348 LYS A 1352 5 5 HELIX 10 AB1 CYS A 1353 THR A 1358 1 6 HELIX 11 AB2 TYR A 1364 GLY A 1381 1 18 HELIX 12 AB3 GLN A 1406 ASN A 1419 1 14 HELIX 13 AB4 ASN A 1428 LYS A 1443 1 16 HELIX 14 AB5 LYS A 1443 LEU A 1458 1 16 SHEET 1 AA1 7 CYS A1153 LEU A1155 0 SHEET 2 AA1 7 TYR A1238 VAL A1241 1 O ALA A1239 N GLN A1154 SHEET 3 AA1 7 SER A1246 GLU A1251 -1 O ILE A1249 N TYR A1238 SHEET 4 AA1 7 LYS A1200 GLU A1206 -1 N LYS A1204 O TYR A1248 SHEET 5 AA1 7 GLY A1187 HIS A1194 -1 N TYR A1190 O LEU A1203 SHEET 6 AA1 7 GLU A1173 LYS A1183 -1 N ILE A1181 O VAL A1189 SHEET 7 AA1 7 THR A1166 VAL A1170 -1 N LEU A1168 O PHE A1175 SHEET 1 AA2 2 ILE A1297 ILE A1298 0 SHEET 2 AA2 2 ILE A1331 ASP A1332 -1 O ILE A1331 N ILE A1298 SHEET 1 AA3 2 PHE A1307 LEU A1309 0 SHEET 2 AA3 2 LEU A1322 LEU A1324 -1 O GLN A1323 N LEU A1308 SHEET 1 AA4 2 VAL A1386 GLN A1388 0 SHEET 2 AA4 2 TRP A1395 PRO A1397 -1 O MET A1396 N VAL A1387 LINK OD1 ASN A1306 MG MG A1502 1555 1555 2.12 LINK OD1 ASP A1326 MG MG A1502 1555 1555 2.16 LINK OD1 ASP A1326 MG MG A1503 1555 1555 2.26 LINK OD2 ASP A1326 MG MG A1503 1555 1555 2.23 LINK O3B ADP A1501 MG MG A1502 1555 1555 2.15 LINK O2A ADP A1501 MG MG A1502 1555 1555 1.96 LINK O2B ADP A1501 MG MG A1503 1555 1555 2.13 LINK MG MG A1502 O HOH A1683 1555 1555 2.06 LINK MG MG A1502 O HOH A1701 1555 1555 1.88 LINK MG MG A1503 O HOH A1659 1555 1555 2.78 LINK MG MG A1503 O HOH A1783 1555 1555 1.93 LINK MG MG A1503 O HOH A1805 1555 1555 1.89 CISPEP 1 ARG A 1207 PRO A 1208 0 -7.38 CISPEP 2 SER A 1390 PRO A 1391 0 3.01 SITE 1 AC1 18 ALA A1202 LYS A1204 GLU A1251 PHE A1252 SITE 2 AC1 18 SER A1253 ASP A1305 ASN A1306 LEU A1308 SITE 3 AC1 18 ASP A1326 MG A1502 MG A1503 HOH A1621 SITE 4 AC1 18 HOH A1634 HOH A1643 HOH A1683 HOH A1700 SITE 5 AC1 18 HOH A1701 HOH A1743 SITE 1 AC2 5 ASN A1306 ASP A1326 ADP A1501 HOH A1683 SITE 2 AC2 5 HOH A1701 SITE 1 AC3 5 ASP A1326 ADP A1501 HOH A1659 HOH A1783 SITE 2 AC3 5 HOH A1805 SITE 1 AC4 9 LYS A1204 GLU A1213 CYS A1217 ALA A1234 SITE 2 AC4 9 ILE A1325 ASP A1326 PHE A1327 HOH A1621 SITE 3 AC4 9 HOH A1630 CRYST1 59.333 61.979 96.232 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016854 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016134 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010392 0.00000