data_6JKN # _entry.id 6JKN # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6JKN pdb_00006jkn 10.2210/pdb6jkn/pdb WWPDB D_1300011269 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-04-03 2 'Structure model' 1 1 2019-04-24 3 'Structure model' 1 2 2019-06-19 4 'Structure model' 1 3 2024-03-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Database references' 7 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' citation 4 4 'Structure model' chem_comp_atom 5 4 'Structure model' chem_comp_bond 6 4 'Structure model' database_2 7 4 'Structure model' pdbx_struct_conn_angle 8 4 'Structure model' struct_conn 9 4 'Structure model' struct_conn_type # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_ASTM' 4 2 'Structure model' '_citation.journal_id_CSD' 5 2 'Structure model' '_citation.journal_id_ISSN' 6 2 'Structure model' '_citation.pdbx_database_id_DOI' 7 2 'Structure model' '_citation.pdbx_database_id_PubMed' 8 2 'Structure model' '_citation.title' 9 2 'Structure model' '_citation.year' 10 3 'Structure model' '_citation.journal_volume' 11 3 'Structure model' '_citation.page_first' 12 3 'Structure model' '_citation.page_last' 13 4 'Structure model' '_database_2.pdbx_DOI' 14 4 'Structure model' '_database_2.pdbx_database_accession' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.value' 18 4 'Structure model' '_struct_conn.conn_type_id' 19 4 'Structure model' '_struct_conn.id' 20 4 'Structure model' '_struct_conn.pdbx_dist_value' 21 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 22 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 23 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 24 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 25 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 26 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 27 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 28 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 29 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 30 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 31 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 32 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 33 4 'Structure model' '_struct_conn_type.id' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6JKN _pdbx_database_status.recvd_initial_deposition_date 2019-03-01 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Geng, Y.' 1 ? 'Cai, Q.' 2 ? 'Liu, C.' 3 ? 'Zhu, G.' 4 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 47 _citation.language ? _citation.page_first 5395 _citation.page_last 5404 _citation.title 'The crystal structure of an antiparallel chair-type G-quadruplex formed by Bromo-substituted human telomeric DNA.' _citation.year 2019 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/nar/gkz221 _citation.pdbx_database_id_PubMed 30957851 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Geng, Y.' 1 ? primary 'Liu, C.' 2 ? primary 'Zhou, B.' 3 ? primary 'Cai, Q.' 4 ? primary 'Miao, H.' 5 ? primary 'Shi, X.' 6 ? primary 'Xu, N.' 7 ? primary 'You, Y.' 8 ? primary 'Fung, C.P.' 9 ? primary 'Din, R.U.' 10 ? primary 'Zhu, G.' 11 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*GP*GP*GP*TP*TP*AP*GP*(BGM)P*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*(BGM)P*G)-3') ; 6828.083 1 ? ? ? ? 2 non-polymer syn 'POTASSIUM ION' 39.098 3 ? ? ? ? 3 water nat water 18.015 119 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(DG)(DG)(DG)(DT)(DT)(DA)(DG)(BGM)(DG)(DT)(DT)(DA)(DG)(DG)(DG)(DT)(DT)(DA)(DG) (BGM)(DG) ; _entity_poly.pdbx_seq_one_letter_code_can GGGTTAGGGTTAGGGTTAGGG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'POTASSIUM ION' K 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DG n 1 3 DG n 1 4 DT n 1 5 DT n 1 6 DA n 1 7 DG n 1 8 BGM n 1 9 DG n 1 10 DT n 1 11 DT n 1 12 DA n 1 13 DG n 1 14 DG n 1 15 DG n 1 16 DT n 1 17 DT n 1 18 DA n 1 19 DG n 1 20 BGM n 1 21 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 21 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight BGM 'DNA linking' n "8-BROMO-2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H13 Br N5 O7 P' 426.117 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG DG A . n A 1 2 DG 2 2 2 DG DG A . n A 1 3 DG 3 3 3 DG DG A . n A 1 4 DT 4 4 4 DT DT A . n A 1 5 DT 5 5 5 DT DT A . n A 1 6 DA 6 6 6 DA DA A . n A 1 7 DG 7 7 7 DG DG A . n A 1 8 BGM 8 8 8 BGM BGM A . n A 1 9 DG 9 9 9 DG DG A . n A 1 10 DT 10 10 10 DT DT A . n A 1 11 DT 11 11 11 DT DT A . n A 1 12 DA 12 12 12 DA DA A . n A 1 13 DG 13 13 13 DG DG A . n A 1 14 DG 14 14 14 DG DG A . n A 1 15 DG 15 15 15 DG DG A . n A 1 16 DT 16 16 16 DT DT A . n A 1 17 DT 17 17 17 DT DT A . n A 1 18 DA 18 18 18 DA DA A . n A 1 19 DG 19 19 19 DG DG A . n A 1 20 BGM 20 20 20 BGM BGM A . n A 1 21 DG 21 21 21 DG DG A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 K 1 101 101 K K A . C 2 K 1 102 102 K K A . D 2 K 1 103 103 K K A . E 3 HOH 1 201 65 HOH HOH A . E 3 HOH 2 202 87 HOH HOH A . E 3 HOH 3 203 97 HOH HOH A . E 3 HOH 4 204 13 HOH HOH A . E 3 HOH 5 205 45 HOH HOH A . E 3 HOH 6 206 99 HOH HOH A . E 3 HOH 7 207 56 HOH HOH A . E 3 HOH 8 208 104 HOH HOH A . E 3 HOH 9 209 17 HOH HOH A . E 3 HOH 10 210 9 HOH HOH A . E 3 HOH 11 211 117 HOH HOH A . E 3 HOH 12 212 34 HOH HOH A . E 3 HOH 13 213 19 HOH HOH A . E 3 HOH 14 214 43 HOH HOH A . E 3 HOH 15 215 60 HOH HOH A . E 3 HOH 16 216 110 HOH HOH A . E 3 HOH 17 217 6 HOH HOH A . E 3 HOH 18 218 41 HOH HOH A . E 3 HOH 19 219 108 HOH HOH A . E 3 HOH 20 220 66 HOH HOH A . E 3 HOH 21 221 92 HOH HOH A . E 3 HOH 22 222 33 HOH HOH A . E 3 HOH 23 223 90 HOH HOH A . E 3 HOH 24 224 78 HOH HOH A . E 3 HOH 25 225 55 HOH HOH A . E 3 HOH 26 226 26 HOH HOH A . E 3 HOH 27 227 32 HOH HOH A . E 3 HOH 28 228 88 HOH HOH A . E 3 HOH 29 229 8 HOH HOH A . E 3 HOH 30 230 18 HOH HOH A . E 3 HOH 31 231 27 HOH HOH A . E 3 HOH 32 232 28 HOH HOH A . E 3 HOH 33 233 46 HOH HOH A . E 3 HOH 34 234 31 HOH HOH A . E 3 HOH 35 235 16 HOH HOH A . E 3 HOH 36 236 37 HOH HOH A . E 3 HOH 37 237 49 HOH HOH A . E 3 HOH 38 238 11 HOH HOH A . E 3 HOH 39 239 42 HOH HOH A . E 3 HOH 40 240 84 HOH HOH A . E 3 HOH 41 241 74 HOH HOH A . E 3 HOH 42 242 96 HOH HOH A . E 3 HOH 43 243 79 HOH HOH A . E 3 HOH 44 244 29 HOH HOH A . E 3 HOH 45 245 30 HOH HOH A . E 3 HOH 46 246 5 HOH HOH A . E 3 HOH 47 247 82 HOH HOH A . E 3 HOH 48 248 4 HOH HOH A . E 3 HOH 49 249 39 HOH HOH A . E 3 HOH 50 250 2 HOH HOH A . E 3 HOH 51 251 20 HOH HOH A . E 3 HOH 52 252 100 HOH HOH A . E 3 HOH 53 253 95 HOH HOH A . E 3 HOH 54 254 91 HOH HOH A . E 3 HOH 55 255 23 HOH HOH A . E 3 HOH 56 256 3 HOH HOH A . E 3 HOH 57 257 10 HOH HOH A . E 3 HOH 58 258 38 HOH HOH A . E 3 HOH 59 259 68 HOH HOH A . E 3 HOH 60 260 14 HOH HOH A . E 3 HOH 61 261 1 HOH HOH A . E 3 HOH 62 262 25 HOH HOH A . E 3 HOH 63 263 77 HOH HOH A . E 3 HOH 64 264 50 HOH HOH A . E 3 HOH 65 265 57 HOH HOH A . E 3 HOH 66 266 35 HOH HOH A . E 3 HOH 67 267 7 HOH HOH A . E 3 HOH 68 268 72 HOH HOH A . E 3 HOH 69 269 47 HOH HOH A . E 3 HOH 70 270 106 HOH HOH A . E 3 HOH 71 271 69 HOH HOH A . E 3 HOH 72 272 89 HOH HOH A . E 3 HOH 73 273 24 HOH HOH A . E 3 HOH 74 274 63 HOH HOH A . E 3 HOH 75 275 54 HOH HOH A . E 3 HOH 76 276 64 HOH HOH A . E 3 HOH 77 277 105 HOH HOH A . E 3 HOH 78 278 70 HOH HOH A . E 3 HOH 79 279 115 HOH HOH A . E 3 HOH 80 280 73 HOH HOH A . E 3 HOH 81 281 15 HOH HOH A . E 3 HOH 82 282 109 HOH HOH A . E 3 HOH 83 283 71 HOH HOH A . E 3 HOH 84 284 75 HOH HOH A . E 3 HOH 85 285 61 HOH HOH A . E 3 HOH 86 286 36 HOH HOH A . E 3 HOH 87 287 107 HOH HOH A . E 3 HOH 88 288 94 HOH HOH A . E 3 HOH 89 289 12 HOH HOH A . E 3 HOH 90 290 103 HOH HOH A . E 3 HOH 91 291 40 HOH HOH A . E 3 HOH 92 292 59 HOH HOH A . E 3 HOH 93 293 101 HOH HOH A . E 3 HOH 94 294 76 HOH HOH A . E 3 HOH 95 295 44 HOH HOH A . E 3 HOH 96 296 102 HOH HOH A . E 3 HOH 97 297 58 HOH HOH A . E 3 HOH 98 298 85 HOH HOH A . E 3 HOH 99 299 52 HOH HOH A . E 3 HOH 100 300 98 HOH HOH A . E 3 HOH 101 301 93 HOH HOH A . E 3 HOH 102 302 62 HOH HOH A . E 3 HOH 103 303 114 HOH HOH A . E 3 HOH 104 304 48 HOH HOH A . E 3 HOH 105 305 86 HOH HOH A . E 3 HOH 106 306 116 HOH HOH A . E 3 HOH 107 307 81 HOH HOH A . E 3 HOH 108 308 83 HOH HOH A . E 3 HOH 109 309 119 HOH HOH A . E 3 HOH 110 310 112 HOH HOH A . E 3 HOH 111 311 22 HOH HOH A . E 3 HOH 112 312 118 HOH HOH A . E 3 HOH 113 313 21 HOH HOH A . E 3 HOH 114 314 51 HOH HOH A . E 3 HOH 115 315 67 HOH HOH A . E 3 HOH 116 316 111 HOH HOH A . E 3 HOH 117 317 80 HOH HOH A . E 3 HOH 118 318 113 HOH HOH A . E 3 HOH 119 319 53 HOH HOH A . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.12_2829 3 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.24 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.12_2829 5 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 6JKN _cell.details ? _cell.formula_units_Z ? _cell.length_a 46.252 _cell.length_a_esd ? _cell.length_b 46.252 _cell.length_b_esd ? _cell.length_c 120.054 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 12 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6JKN _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6JKN _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.71 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 54.69 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity 0.470 _exptl_crystal.pdbx_mosaicity_esd 0.006 # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method EVAPORATION _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 289 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1M sodium cacodylate pH 6.0, 80mM KCl, 12mM NaCl, 12mM spermine tetrahydrochloride, 50% MPD' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2018-03-24 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'double crystal' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.91904 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRF BEAMLINE BL19U1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.91904 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL19U1 _diffrn_source.pdbx_synchrotron_site SSRF # _reflns.B_iso_Wilson_estimate 18.920 _reflns.entry_id 6JKN _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.400 _reflns.d_resolution_low 50.000 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 15673 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.300 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 32.800 _reflns.pdbx_Rmerge_I_obs 0.075 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 6.300 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 0.790 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.076 _reflns.pdbx_Rpim_I_all 0.013 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split 1.400 1.420 ? ? ? ? ? ? 677 91.700 ? ? ? ? 1.059 ? ? ? ? ? ? ? ? 17.200 ? 0.441 ? ? 1.089 0.232 ? 1 1 0.869 ? 1.420 1.450 ? ? ? ? ? ? 751 96.800 ? ? ? ? 1.236 ? ? ? ? ? ? ? ? 21.000 ? 0.428 ? ? 1.265 0.254 ? 2 1 0.903 ? 1.450 1.480 ? ? ? ? ? ? 760 99.500 ? ? ? ? 1.118 ? ? ? ? ? ? ? ? 23.800 ? 0.429 ? ? 1.141 0.220 ? 3 1 0.934 ? 1.480 1.510 ? ? ? ? ? ? 747 99.100 ? ? ? ? 1.089 ? ? ? ? ? ? ? ? 28.300 ? 0.438 ? ? 1.109 0.201 ? 4 1 0.968 ? 1.510 1.540 ? ? ? ? ? ? 782 100.000 ? ? ? ? 0.884 ? ? ? ? ? ? ? ? 33.400 ? 0.437 ? ? 0.898 0.152 ? 5 1 0.997 ? 1.540 1.580 ? ? ? ? ? ? 755 100.000 ? ? ? ? 0.584 ? ? ? ? ? ? ? ? 35.800 ? 0.472 ? ? 0.592 0.098 ? 6 1 0.995 ? 1.580 1.620 ? ? ? ? ? ? 772 100.000 ? ? ? ? 0.498 ? ? ? ? ? ? ? ? 36.600 ? 0.483 ? ? 0.505 0.083 ? 7 1 0.996 ? 1.620 1.660 ? ? ? ? ? ? 772 100.000 ? ? ? ? 0.355 ? ? ? ? ? ? ? ? 36.400 ? 0.517 ? ? 0.360 0.059 ? 8 1 0.995 ? 1.660 1.710 ? ? ? ? ? ? 767 100.000 ? ? ? ? 0.290 ? ? ? ? ? ? ? ? 35.800 ? 0.543 ? ? 0.294 0.049 ? 9 1 0.997 ? 1.710 1.760 ? ? ? ? ? ? 775 100.000 ? ? ? ? 0.218 ? ? ? ? ? ? ? ? 32.500 ? 0.611 ? ? 0.221 0.039 ? 10 1 0.998 ? 1.760 1.830 ? ? ? ? ? ? 779 100.000 ? ? ? ? 0.189 ? ? ? ? ? ? ? ? 36.300 ? 0.622 ? ? 0.192 0.032 ? 11 1 0.999 ? 1.830 1.900 ? ? ? ? ? ? 773 100.000 ? ? ? ? 0.169 ? ? ? ? ? ? ? ? 37.800 ? 0.675 ? ? 0.171 0.028 ? 12 1 0.999 ? 1.900 1.990 ? ? ? ? ? ? 784 99.900 ? ? ? ? 0.145 ? ? ? ? ? ? ? ? 37.500 ? 0.777 ? ? 0.147 0.024 ? 13 1 0.999 ? 1.990 2.090 ? ? ? ? ? ? 787 100.000 ? ? ? ? 0.120 ? ? ? ? ? ? ? ? 36.700 ? 0.884 ? ? 0.122 0.021 ? 14 1 0.999 ? 2.090 2.220 ? ? ? ? ? ? 805 100.000 ? ? ? ? 0.095 ? ? ? ? ? ? ? ? 33.900 ? 1.161 ? ? 0.096 0.017 ? 15 1 0.999 ? 2.220 2.390 ? ? ? ? ? ? 781 100.000 ? ? ? ? 0.086 ? ? ? ? ? ? ? ? 35.900 ? 1.234 ? ? 0.087 0.015 ? 16 1 0.999 ? 2.390 2.630 ? ? ? ? ? ? 806 100.000 ? ? ? ? 0.074 ? ? ? ? ? ? ? ? 37.300 ? 1.190 ? ? 0.075 0.013 ? 17 1 1.000 ? 2.630 3.020 ? ? ? ? ? ? 824 100.000 ? ? ? ? 0.067 ? ? ? ? ? ? ? ? 35.100 ? 1.275 ? ? 0.068 0.012 ? 18 1 0.999 ? 3.020 3.800 ? ? ? ? ? ? 841 99.800 ? ? ? ? 0.053 ? ? ? ? ? ? ? ? 31.800 ? 1.245 ? ? 0.054 0.009 ? 19 1 0.999 ? 3.800 50.000 ? ? ? ? ? ? 935 99.500 ? ? ? ? 0.053 ? ? ? ? ? ? ? ? 29.800 ? 1.299 ? ? 0.053 0.010 ? 20 1 0.997 ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 85.910 _refine.B_iso_mean 30.9781 _refine.B_iso_min 11.130 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6JKN _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.4010 _refine.ls_d_res_low 37.9960 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 15571 _refine.ls_number_reflns_R_free 1383 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.8200 _refine.ls_percent_reflns_R_free 4.9600 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1602 _refine.ls_R_factor_R_free 0.1842 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1590 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.350 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 23.1600 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.1700 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 1.4010 _refine_hist.d_res_low 37.9960 _refine_hist.pdbx_number_atoms_ligand 3 _refine_hist.number_atoms_solvent 119 _refine_hist.number_atoms_total 568 _refine_hist.pdbx_number_residues_total 21 _refine_hist.pdbx_B_iso_mean_ligand 20.19 _refine_hist.pdbx_B_iso_mean_solvent 41.17 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 446 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.009 ? 502 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.854 ? 779 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.067 ? 81 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.016 ? 21 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 32.010 ? 208 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.4011 1.4512 2566 . 140 2426 91.0000 . . . 0.3404 0.0000 0.3238 . . . . . . 10 . . . 'X-RAY DIFFRACTION' 1.4512 1.5093 2782 . 146 2636 99.0000 . . . 0.2906 0.0000 0.2722 . . . . . . 10 . . . 'X-RAY DIFFRACTION' 1.5093 1.5780 2804 . 109 2695 99.0000 . . . 0.2064 0.0000 0.2069 . . . . . . 10 . . . 'X-RAY DIFFRACTION' 1.5780 1.6612 2823 . 123 2700 100.0000 . . . 0.1902 0.0000 0.1586 . . . . . . 10 . . . 'X-RAY DIFFRACTION' 1.6612 1.7653 2820 . 150 2670 100.0000 . . . 0.1797 0.0000 0.1466 . . . . . . 10 . . . 'X-RAY DIFFRACTION' 1.7653 1.9016 2818 . 151 2667 100.0000 . . . 0.2189 0.0000 0.1530 . . . . . . 10 . . . 'X-RAY DIFFRACTION' 1.9016 2.0929 2823 . 125 2698 100.0000 . . . 0.2534 0.0000 0.1730 . . . . . . 10 . . . 'X-RAY DIFFRACTION' 2.0929 2.3957 2814 . 169 2645 100.0000 . . . 0.1897 0.0000 0.1631 . . . . . . 10 . . . 'X-RAY DIFFRACTION' 2.3957 3.0182 2822 . 146 2676 100.0000 . . . 0.1645 0.0000 0.1588 . . . . . . 10 . . . 'X-RAY DIFFRACTION' 3.0182 38.0103 2834 . 124 2710 100.0000 . . . 0.1523 0.0000 0.1387 . . . . . . 10 . . . # _struct.entry_id 6JKN _struct.title 'Crystal Structure of G-quadruplex Formed by Bromo-substituted Human Telomeric DNA' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6JKN _struct_keywords.text 'DNA, G-quadruplex' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 3 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6JKN _struct_ref.pdbx_db_accession 6JKN _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6JKN _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 21 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 6JKN _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 21 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 21 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1120 ? 1 MORE 11 ? 1 'SSA (A^2)' 4090 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'native gel electrophoresis' _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DG 7 "O3'" ? ? ? 1_555 A BGM 8 P ? ? A DG 7 A BGM 8 1_555 ? ? ? ? ? ? ? 1.612 ? ? covale2 covale both ? A BGM 8 "O3'" ? ? ? 1_555 A DG 9 P ? ? A BGM 8 A DG 9 1_555 ? ? ? ? ? ? ? 1.621 ? ? covale3 covale both ? A DG 19 "O3'" ? ? ? 1_555 A BGM 20 P ? ? A DG 19 A BGM 20 1_555 ? ? ? ? ? ? ? 1.603 ? ? covale4 covale both ? A BGM 20 "O3'" ? ? ? 1_555 A DG 21 P ? ? A BGM 20 A DG 21 1_555 ? ? ? ? ? ? ? 1.608 ? ? metalc1 metalc ? ? A DG 1 O6 ? ? ? 1_555 D K . K ? ? A DG 1 A K 103 1_555 ? ? ? ? ? ? ? 2.700 ? ? metalc2 metalc ? ? A DG 2 O6 ? ? ? 1_555 C K . K ? ? A DG 2 A K 102 1_555 ? ? ? ? ? ? ? 2.775 ? ? metalc3 metalc ? ? A DG 2 O6 ? ? ? 1_555 D K . K ? ? A DG 2 A K 103 1_555 ? ? ? ? ? ? ? 3.157 ? ? metalc4 metalc ? ? A DG 3 O6 ? ? ? 1_555 B K . K ? ? A DG 3 A K 101 1_555 ? ? ? ? ? ? ? 2.820 ? ? metalc5 metalc ? ? A DG 3 O6 ? ? ? 1_555 C K . K ? ? A DG 3 A K 102 1_555 ? ? ? ? ? ? ? 2.858 ? ? metalc6 metalc ? ? A DT 5 O2 ? ? ? 1_555 B K . K ? ? A DT 5 A K 101 1_555 ? ? ? ? ? ? ? 2.847 ? ? metalc7 metalc ? ? A DG 7 O6 ? ? ? 1_555 B K . K ? ? A DG 7 A K 101 1_555 ? ? ? ? ? ? ? 2.830 ? ? metalc8 metalc ? ? A DG 7 O6 ? ? ? 1_555 C K . K ? ? A DG 7 A K 102 1_555 ? ? ? ? ? ? ? 2.699 ? ? metalc9 metalc ? ? A BGM 8 O6 ? ? ? 1_555 C K . K ? ? A BGM 8 A K 102 1_555 ? ? ? ? ? ? ? 2.891 ? ? metalc10 metalc ? ? A BGM 8 O6 ? ? ? 1_555 D K . K ? ? A BGM 8 A K 103 1_555 ? ? ? ? ? ? ? 2.896 ? ? metalc11 metalc ? ? A DG 9 O6 ? ? ? 1_555 D K . K ? ? A DG 9 A K 103 1_555 ? ? ? ? ? ? ? 2.713 ? ? metalc12 metalc ? ? A DG 13 O6 ? ? ? 1_555 D K . K ? ? A DG 13 A K 103 1_555 ? ? ? ? ? ? ? 2.713 ? ? metalc13 metalc ? ? A DG 14 O6 ? ? ? 1_555 C K . K ? ? A DG 14 A K 102 1_555 ? ? ? ? ? ? ? 2.708 ? ? metalc14 metalc ? ? A DG 14 O6 ? ? ? 1_555 D K . K ? ? A DG 14 A K 103 1_555 ? ? ? ? ? ? ? 2.841 ? ? metalc15 metalc ? ? A DG 15 O6 ? ? ? 1_555 B K . K ? ? A DG 15 A K 101 1_555 ? ? ? ? ? ? ? 2.807 ? ? metalc16 metalc ? ? A DG 15 O6 ? ? ? 1_555 C K . K ? ? A DG 15 A K 102 1_555 ? ? ? ? ? ? ? 3.025 ? ? metalc17 metalc ? ? A DT 17 O2 ? ? ? 1_555 B K . K ? ? A DT 17 A K 101 1_555 ? ? ? ? ? ? ? 2.838 ? ? metalc18 metalc ? ? A DG 19 O6 ? ? ? 1_555 B K . K ? ? A DG 19 A K 101 1_555 ? ? ? ? ? ? ? 2.936 ? ? metalc19 metalc ? ? A DG 19 O6 ? ? ? 1_555 C K . K ? ? A DG 19 A K 102 1_555 ? ? ? ? ? ? ? 2.729 ? ? metalc20 metalc ? ? A BGM 20 O6 ? ? ? 1_555 C K . K ? ? A BGM 20 A K 102 1_555 ? ? ? ? ? ? ? 2.719 ? ? metalc21 metalc ? ? A BGM 20 O6 ? ? ? 1_555 D K . K ? ? A BGM 20 A K 103 1_555 ? ? ? ? ? ? ? 2.794 ? ? metalc22 metalc ? ? A DG 21 O6 ? ? ? 1_555 D K . K ? ? A DG 21 A K 103 1_555 ? ? ? ? ? ? ? 2.802 ? ? metalc23 metalc ? ? B K . K ? ? ? 1_555 E HOH . O ? ? A K 101 A HOH 257 1_555 ? ? ? ? ? ? ? 2.730 ? ? metalc24 metalc ? ? B K . K ? ? ? 1_555 E HOH . O ? ? A K 101 A HOH 261 1_555 ? ? ? ? ? ? ? 2.733 ? ? hydrog1 hydrog ? ? A DG 1 N7 ? ? ? 1_555 A DG 9 N2 ? ? A DG 1 A DG 9 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog2 hydrog ? ? A DG 1 O6 ? ? ? 1_555 A DG 9 N1 ? ? A DG 1 A DG 9 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog3 hydrog ? ? A DG 1 N1 ? ? ? 1_555 A DG 21 O6 ? ? A DG 1 A DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog4 hydrog ? ? A DG 1 N2 ? ? ? 1_555 A DG 21 N7 ? ? A DG 1 A DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog5 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A BGM 8 O6 ? ? A DG 2 A BGM 8 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog6 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A BGM 8 N7 ? ? A DG 2 A BGM 8 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog7 hydrog ? ? A DG 2 N7 ? ? ? 1_555 A BGM 20 N2 ? ? A DG 2 A BGM 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog8 hydrog ? ? A DG 2 O6 ? ? ? 1_555 A BGM 20 N1 ? ? A DG 2 A BGM 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog9 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DG 7 O6 ? ? A DG 3 A DG 7 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog10 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DG 7 N7 ? ? A DG 3 A DG 7 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog11 hydrog ? ? A DG 3 N7 ? ? ? 1_555 A DG 19 N2 ? ? A DG 3 A DG 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog12 hydrog ? ? A DG 3 O6 ? ? ? 1_555 A DG 19 N1 ? ? A DG 3 A DG 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog13 hydrog ? ? A DA 6 N6 ? ? ? 1_555 A DA 18 N7 ? ? A DA 6 A DA 18 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog14 hydrog ? ? A DA 6 N7 ? ? ? 1_555 A DA 18 N6 ? ? A DA 6 A DA 18 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog15 hydrog ? ? A DG 7 N1 ? ? ? 1_555 A DG 15 O6 ? ? A DG 7 A DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog16 hydrog ? ? A DG 7 N2 ? ? ? 1_555 A DG 15 N7 ? ? A DG 7 A DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog17 hydrog ? ? A BGM 8 N1 ? ? ? 1_555 A DG 14 O6 ? ? A BGM 8 A DG 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog18 hydrog ? ? A BGM 8 N2 ? ? ? 1_555 A DG 14 N7 ? ? A BGM 8 A DG 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog19 hydrog ? ? A DG 9 N7 ? ? ? 1_555 A DG 13 N2 ? ? A DG 9 A DG 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog20 hydrog ? ? A DG 9 O6 ? ? ? 1_555 A DG 13 N1 ? ? A DG 9 A DG 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog21 hydrog ? ? A DT 10 N3 ? ? ? 1_555 A DA 12 N7 ? ? A DT 10 A DA 12 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog22 hydrog ? ? A DT 10 O4 ? ? ? 1_555 A DA 12 N6 ? ? A DT 10 A DA 12 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog23 hydrog ? ? A DG 13 N7 ? ? ? 1_555 A DG 21 N2 ? ? A DG 13 A DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog24 hydrog ? ? A DG 13 O6 ? ? ? 1_555 A DG 21 N1 ? ? A DG 13 A DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog25 hydrog ? ? A DG 14 N1 ? ? ? 1_555 A BGM 20 O6 ? ? A DG 14 A BGM 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog26 hydrog ? ? A DG 14 N2 ? ? ? 1_555 A BGM 20 N7 ? ? A DG 14 A BGM 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog27 hydrog ? ? A DG 15 N1 ? ? ? 1_555 A DG 19 O6 ? ? A DG 15 A DG 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog28 hydrog ? ? A DG 15 N2 ? ? ? 1_555 A DG 19 N7 ? ? A DG 15 A DG 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 2 ? A DG 2 ? 1_555 69.0 ? 2 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A BGM 8 ? A BGM 8 ? 1_555 98.5 ? 3 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A BGM 8 ? A BGM 8 ? 1_555 64.3 ? 4 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 76.4 ? 5 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 116.9 ? 6 O6 ? A BGM 8 ? A BGM 8 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 71.1 ? 7 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 13 ? A DG 13 ? 1_555 121.9 ? 8 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 13 ? A DG 13 ? 1_555 166.6 ? 9 O6 ? A BGM 8 ? A BGM 8 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 13 ? A DG 13 ? 1_555 117.9 ? 10 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 13 ? A DG 13 ? 1_555 75.1 ? 11 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 14 ? A DG 14 ? 1_555 163.4 ? 12 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 14 ? A DG 14 ? 1_555 98.0 ? 13 O6 ? A BGM 8 ? A BGM 8 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 14 ? A DG 14 ? 1_555 65.7 ? 14 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 14 ? A DG 14 ? 1_555 101.8 ? 15 O6 ? A DG 13 ? A DG 13 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 14 ? A DG 14 ? 1_555 72.5 ? 16 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A BGM 20 ? A BGM 20 ? 1_555 112.2 ? 17 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A BGM 20 ? A BGM 20 ? 1_555 64.4 ? 18 O6 ? A BGM 8 ? A BGM 8 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A BGM 20 ? A BGM 20 ? 1_555 102.2 ? 19 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A BGM 20 ? A BGM 20 ? 1_555 170.1 ? 20 O6 ? A DG 13 ? A DG 13 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A BGM 20 ? A BGM 20 ? 1_555 102.8 ? 21 O6 ? A DG 14 ? A DG 14 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A BGM 20 ? A BGM 20 ? 1_555 68.5 ? 22 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 75.0 ? 23 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 104.6 ? 24 O6 ? A BGM 8 ? A BGM 8 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 168.7 ? 25 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 115.3 ? 26 O6 ? A DG 13 ? A DG 13 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 73.3 ? 27 O6 ? A DG 14 ? A DG 14 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 119.6 ? 28 O6 ? A BGM 20 ? A BGM 20 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A DG 21 ? A DG 21 ? 1_555 72.6 ? 29 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 3 ? A DG 3 ? 1_555 79.2 ? 30 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 7 ? A DG 7 ? 1_555 130.4 ? 31 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 7 ? A DG 7 ? 1_555 68.2 ? 32 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A BGM 8 ? A BGM 8 ? 1_555 69.4 ? 33 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A BGM 8 ? A BGM 8 ? 1_555 101.6 ? 34 O6 ? A DG 7 ? A DG 7 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A BGM 8 ? A BGM 8 ? 1_555 81.5 ? 35 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 14 ? A DG 14 ? 1_555 111.5 ? 36 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 14 ? A DG 14 ? 1_555 158.9 ? 37 O6 ? A DG 7 ? A DG 7 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 14 ? A DG 14 ? 1_555 91.7 ? 38 O6 ? A BGM 8 ? A BGM 8 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 14 ? A DG 14 ? 1_555 67.5 ? 39 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 159.8 ? 40 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 100.6 ? 41 O6 ? A DG 7 ? A DG 7 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 65.9 ? 42 O6 ? A BGM 8 ? A BGM 8 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 129.6 ? 43 O6 ? A DG 14 ? A DG 14 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 75.8 ? 44 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 19 ? A DG 19 ? 1_555 95.5 ? 45 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 19 ? A DG 19 ? 1_555 68.7 ? 46 O6 ? A DG 7 ? A DG 7 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 19 ? A DG 19 ? 1_555 105.5 ? 47 O6 ? A BGM 8 ? A BGM 8 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 19 ? A DG 19 ? 1_555 163.8 ? 48 O6 ? A DG 14 ? A DG 14 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 19 ? A DG 19 ? 1_555 125.8 ? 49 O6 ? A DG 15 ? A DG 15 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 19 ? A DG 19 ? 1_555 66.2 ? 50 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A BGM 20 ? A BGM 20 ? 1_555 70.8 ? 51 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A BGM 20 ? A BGM 20 ? 1_555 129.6 ? 52 O6 ? A DG 7 ? A DG 7 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A BGM 20 ? A BGM 20 ? 1_555 157.8 ? 53 O6 ? A BGM 8 ? A BGM 8 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A BGM 20 ? A BGM 20 ? 1_555 104.3 ? 54 O6 ? A DG 14 ? A DG 14 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A BGM 20 ? A BGM 20 ? 1_555 71.5 ? 55 O6 ? A DG 15 ? A DG 15 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A BGM 20 ? A BGM 20 ? 1_555 95.1 ? 56 O6 ? A DG 19 ? A DG 19 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A BGM 20 ? A BGM 20 ? 1_555 74.9 ? 57 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? B K . ? A K 101 ? 1_555 O2 ? A DT 5 ? A DT 5 ? 1_555 68.5 ? 58 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 7 ? A DG 7 ? 1_555 67.0 ? 59 O2 ? A DT 5 ? A DT 5 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 7 ? A DG 7 ? 1_555 117.2 ? 60 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 107.1 ? 61 O2 ? A DT 5 ? A DT 5 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 169.6 ? 62 O6 ? A DG 7 ? A DG 7 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 67.4 ? 63 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? B K . ? A K 101 ? 1_555 O2 ? A DT 17 ? A DT 17 ? 1_555 171.1 ? 64 O2 ? A DT 5 ? A DT 5 ? 1_555 K ? B K . ? A K 101 ? 1_555 O2 ? A DT 17 ? A DT 17 ? 1_555 113.9 ? 65 O6 ? A DG 7 ? A DG 7 ? 1_555 K ? B K . ? A K 101 ? 1_555 O2 ? A DT 17 ? A DT 17 ? 1_555 105.1 ? 66 O6 ? A DG 15 ? A DG 15 ? 1_555 K ? B K . ? A K 101 ? 1_555 O2 ? A DT 17 ? A DT 17 ? 1_555 72.0 ? 67 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 19 ? A DG 19 ? 1_555 66.4 ? 68 O2 ? A DT 5 ? A DT 5 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 19 ? A DG 19 ? 1_555 103.3 ? 69 O6 ? A DG 7 ? A DG 7 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 19 ? A DG 19 ? 1_555 97.0 ? 70 O6 ? A DG 15 ? A DG 15 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 19 ? A DG 19 ? 1_555 66.5 ? 71 O2 ? A DT 17 ? A DT 17 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 19 ? A DG 19 ? 1_555 119.9 ? 72 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? B K . ? A K 101 ? 1_555 O ? E HOH . ? A HOH 257 ? 1_555 111.2 ? 73 O2 ? A DT 5 ? A DT 5 ? 1_555 K ? B K . ? A K 101 ? 1_555 O ? E HOH . ? A HOH 257 ? 1_555 85.4 ? 74 O6 ? A DG 7 ? A DG 7 ? 1_555 K ? B K . ? A K 101 ? 1_555 O ? E HOH . ? A HOH 257 ? 1_555 72.3 ? 75 O6 ? A DG 15 ? A DG 15 ? 1_555 K ? B K . ? A K 101 ? 1_555 O ? E HOH . ? A HOH 257 ? 1_555 105.0 ? 76 O2 ? A DT 17 ? A DT 17 ? 1_555 K ? B K . ? A K 101 ? 1_555 O ? E HOH . ? A HOH 257 ? 1_555 61.3 ? 77 O6 ? A DG 19 ? A DG 19 ? 1_555 K ? B K . ? A K 101 ? 1_555 O ? E HOH . ? A HOH 257 ? 1_555 168.7 ? 78 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? B K . ? A K 101 ? 1_555 O ? E HOH . ? A HOH 261 ? 1_555 104.2 ? 79 O2 ? A DT 5 ? A DT 5 ? 1_555 K ? B K . ? A K 101 ? 1_555 O ? E HOH . ? A HOH 261 ? 1_555 61.5 ? 80 O6 ? A DG 7 ? A DG 7 ? 1_555 K ? B K . ? A K 101 ? 1_555 O ? E HOH . ? A HOH 261 ? 1_555 169.7 ? 81 O6 ? A DG 15 ? A DG 15 ? 1_555 K ? B K . ? A K 101 ? 1_555 O ? E HOH . ? A HOH 261 ? 1_555 112.2 ? 82 O2 ? A DT 17 ? A DT 17 ? 1_555 K ? B K . ? A K 101 ? 1_555 O ? E HOH . ? A HOH 261 ? 1_555 84.1 ? 83 O6 ? A DG 19 ? A DG 19 ? 1_555 K ? B K . ? A K 101 ? 1_555 O ? E HOH . ? A HOH 261 ? 1_555 74.0 ? 84 O ? E HOH . ? A HOH 257 ? 1_555 K ? B K . ? A K 101 ? 1_555 O ? E HOH . ? A HOH 261 ? 1_555 116.9 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A K 101 ? 9 'binding site for residue K A 101' AC2 Software A K 102 ? 10 'binding site for residue K A 102' AC3 Software A K 103 ? 9 'binding site for residue K A 103' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 DG A 3 ? DG A 3 . ? 1_555 ? 2 AC1 9 DT A 5 ? DT A 5 . ? 1_555 ? 3 AC1 9 DG A 7 ? DG A 7 . ? 1_555 ? 4 AC1 9 DG A 15 ? DG A 15 . ? 1_555 ? 5 AC1 9 DT A 17 ? DT A 17 . ? 1_555 ? 6 AC1 9 DG A 19 ? DG A 19 . ? 1_555 ? 7 AC1 9 K C . ? K A 102 . ? 1_555 ? 8 AC1 9 HOH E . ? HOH A 257 . ? 1_555 ? 9 AC1 9 HOH E . ? HOH A 261 . ? 1_555 ? 10 AC2 10 DG A 2 ? DG A 2 . ? 1_555 ? 11 AC2 10 DG A 3 ? DG A 3 . ? 1_555 ? 12 AC2 10 DG A 7 ? DG A 7 . ? 1_555 ? 13 AC2 10 BGM A 8 ? BGM A 8 . ? 1_555 ? 14 AC2 10 DG A 14 ? DG A 14 . ? 1_555 ? 15 AC2 10 DG A 15 ? DG A 15 . ? 1_555 ? 16 AC2 10 DG A 19 ? DG A 19 . ? 1_555 ? 17 AC2 10 BGM A 20 ? BGM A 20 . ? 1_555 ? 18 AC2 10 K B . ? K A 101 . ? 1_555 ? 19 AC2 10 K D . ? K A 103 . ? 1_555 ? 20 AC3 9 DG A 1 ? DG A 1 . ? 1_555 ? 21 AC3 9 DG A 2 ? DG A 2 . ? 1_555 ? 22 AC3 9 BGM A 8 ? BGM A 8 . ? 1_555 ? 23 AC3 9 DG A 9 ? DG A 9 . ? 1_555 ? 24 AC3 9 DG A 13 ? DG A 13 . ? 1_555 ? 25 AC3 9 DG A 14 ? DG A 14 . ? 1_555 ? 26 AC3 9 BGM A 20 ? BGM A 20 . ? 1_555 ? 27 AC3 9 DG A 21 ? DG A 21 . ? 1_555 ? 28 AC3 9 K C . ? K A 102 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 112.96 108.30 4.66 0.30 N 2 1 "O5'" A DA 12 ? ? P A DA 12 ? ? OP1 A DA 12 ? ? 99.70 105.70 -6.00 0.90 N 3 1 "O4'" A DT 16 ? ? "C1'" A DT 16 ? ? N1 A DT 16 ? ? 110.43 108.30 2.13 0.30 N 4 1 "O4'" A DG 19 ? ? "C1'" A DG 19 ? ? N9 A DG 19 ? ? 111.66 108.30 3.36 0.30 N # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 233 ? E HOH . 2 1 A HOH 318 ? E HOH . # _phasing.method SAD # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal BGM P P N N 1 BGM OP1 O N N 2 BGM OP2 O N N 3 BGM "O5'" O N N 4 BGM "C5'" C N N 5 BGM "C4'" C N R 6 BGM "O4'" O N N 7 BGM "C1'" C N R 8 BGM N9 N Y N 9 BGM C8 C Y N 10 BGM N7 N Y N 11 BGM C5 C Y N 12 BGM C4 C Y N 13 BGM N3 N N N 14 BGM C2 C N N 15 BGM N2 N N N 16 BGM N1 N N N 17 BGM C6 C N N 18 BGM O6 O N N 19 BGM "C2'" C N N 20 BGM "C3'" C N S 21 BGM "O3'" O N N 22 BGM OP3 O N N 23 BGM BR BR N N 24 BGM HOP2 H N N 25 BGM "H5'" H N N 26 BGM "H5''" H N N 27 BGM "H4'" H N N 28 BGM "H1'" H N N 29 BGM H21 H N N 30 BGM H22 H N N 31 BGM H1 H N N 32 BGM "H2'" H N N 33 BGM "H2''" H N N 34 BGM "H3'" H N N 35 BGM "HO3'" H N N 36 BGM HOP3 H N N 37 DA OP3 O N N 38 DA P P N N 39 DA OP1 O N N 40 DA OP2 O N N 41 DA "O5'" O N N 42 DA "C5'" C N N 43 DA "C4'" C N R 44 DA "O4'" O N N 45 DA "C3'" C N S 46 DA "O3'" O N N 47 DA "C2'" C N N 48 DA "C1'" C N R 49 DA N9 N Y N 50 DA C8 C Y N 51 DA N7 N Y N 52 DA C5 C Y N 53 DA C6 C Y N 54 DA N6 N N N 55 DA N1 N Y N 56 DA C2 C Y N 57 DA N3 N Y N 58 DA C4 C Y N 59 DA HOP3 H N N 60 DA HOP2 H N N 61 DA "H5'" H N N 62 DA "H5''" H N N 63 DA "H4'" H N N 64 DA "H3'" H N N 65 DA "HO3'" H N N 66 DA "H2'" H N N 67 DA "H2''" H N N 68 DA "H1'" H N N 69 DA H8 H N N 70 DA H61 H N N 71 DA H62 H N N 72 DA H2 H N N 73 DG OP3 O N N 74 DG P P N N 75 DG OP1 O N N 76 DG OP2 O N N 77 DG "O5'" O N N 78 DG "C5'" C N N 79 DG "C4'" C N R 80 DG "O4'" O N N 81 DG "C3'" C N S 82 DG "O3'" O N N 83 DG "C2'" C N N 84 DG "C1'" C N R 85 DG N9 N Y N 86 DG C8 C Y N 87 DG N7 N Y N 88 DG C5 C Y N 89 DG C6 C N N 90 DG O6 O N N 91 DG N1 N N N 92 DG C2 C N N 93 DG N2 N N N 94 DG N3 N N N 95 DG C4 C Y N 96 DG HOP3 H N N 97 DG HOP2 H N N 98 DG "H5'" H N N 99 DG "H5''" H N N 100 DG "H4'" H N N 101 DG "H3'" H N N 102 DG "HO3'" H N N 103 DG "H2'" H N N 104 DG "H2''" H N N 105 DG "H1'" H N N 106 DG H8 H N N 107 DG H1 H N N 108 DG H21 H N N 109 DG H22 H N N 110 DT OP3 O N N 111 DT P P N N 112 DT OP1 O N N 113 DT OP2 O N N 114 DT "O5'" O N N 115 DT "C5'" C N N 116 DT "C4'" C N R 117 DT "O4'" O N N 118 DT "C3'" C N S 119 DT "O3'" O N N 120 DT "C2'" C N N 121 DT "C1'" C N R 122 DT N1 N N N 123 DT C2 C N N 124 DT O2 O N N 125 DT N3 N N N 126 DT C4 C N N 127 DT O4 O N N 128 DT C5 C N N 129 DT C7 C N N 130 DT C6 C N N 131 DT HOP3 H N N 132 DT HOP2 H N N 133 DT "H5'" H N N 134 DT "H5''" H N N 135 DT "H4'" H N N 136 DT "H3'" H N N 137 DT "HO3'" H N N 138 DT "H2'" H N N 139 DT "H2''" H N N 140 DT "H1'" H N N 141 DT H3 H N N 142 DT H71 H N N 143 DT H72 H N N 144 DT H73 H N N 145 DT H6 H N N 146 HOH O O N N 147 HOH H1 H N N 148 HOH H2 H N N 149 K K K N N 150 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal BGM P OP1 doub N N 1 BGM P OP2 sing N N 2 BGM P "O5'" sing N N 3 BGM P OP3 sing N N 4 BGM OP2 HOP2 sing N N 5 BGM "O5'" "C5'" sing N N 6 BGM "C5'" "C4'" sing N N 7 BGM "C5'" "H5'" sing N N 8 BGM "C5'" "H5''" sing N N 9 BGM "C4'" "O4'" sing N N 10 BGM "C4'" "C3'" sing N N 11 BGM "C4'" "H4'" sing N N 12 BGM "O4'" "C1'" sing N N 13 BGM "C1'" N9 sing N N 14 BGM "C1'" "C2'" sing N N 15 BGM "C1'" "H1'" sing N N 16 BGM N9 C8 sing Y N 17 BGM N9 C4 sing Y N 18 BGM C8 N7 doub Y N 19 BGM C8 BR sing N N 20 BGM N7 C5 sing Y N 21 BGM C5 C4 doub Y N 22 BGM C5 C6 sing N N 23 BGM C4 N3 sing N N 24 BGM N3 C2 doub N N 25 BGM C2 N2 sing N N 26 BGM C2 N1 sing N N 27 BGM N2 H21 sing N N 28 BGM N2 H22 sing N N 29 BGM N1 C6 sing N N 30 BGM N1 H1 sing N N 31 BGM C6 O6 doub N N 32 BGM "C2'" "C3'" sing N N 33 BGM "C2'" "H2'" sing N N 34 BGM "C2'" "H2''" sing N N 35 BGM "C3'" "O3'" sing N N 36 BGM "C3'" "H3'" sing N N 37 BGM "O3'" "HO3'" sing N N 38 BGM OP3 HOP3 sing N N 39 DA OP3 P sing N N 40 DA OP3 HOP3 sing N N 41 DA P OP1 doub N N 42 DA P OP2 sing N N 43 DA P "O5'" sing N N 44 DA OP2 HOP2 sing N N 45 DA "O5'" "C5'" sing N N 46 DA "C5'" "C4'" sing N N 47 DA "C5'" "H5'" sing N N 48 DA "C5'" "H5''" sing N N 49 DA "C4'" "O4'" sing N N 50 DA "C4'" "C3'" sing N N 51 DA "C4'" "H4'" sing N N 52 DA "O4'" "C1'" sing N N 53 DA "C3'" "O3'" sing N N 54 DA "C3'" "C2'" sing N N 55 DA "C3'" "H3'" sing N N 56 DA "O3'" "HO3'" sing N N 57 DA "C2'" "C1'" sing N N 58 DA "C2'" "H2'" sing N N 59 DA "C2'" "H2''" sing N N 60 DA "C1'" N9 sing N N 61 DA "C1'" "H1'" sing N N 62 DA N9 C8 sing Y N 63 DA N9 C4 sing Y N 64 DA C8 N7 doub Y N 65 DA C8 H8 sing N N 66 DA N7 C5 sing Y N 67 DA C5 C6 sing Y N 68 DA C5 C4 doub Y N 69 DA C6 N6 sing N N 70 DA C6 N1 doub Y N 71 DA N6 H61 sing N N 72 DA N6 H62 sing N N 73 DA N1 C2 sing Y N 74 DA C2 N3 doub Y N 75 DA C2 H2 sing N N 76 DA N3 C4 sing Y N 77 DG OP3 P sing N N 78 DG OP3 HOP3 sing N N 79 DG P OP1 doub N N 80 DG P OP2 sing N N 81 DG P "O5'" sing N N 82 DG OP2 HOP2 sing N N 83 DG "O5'" "C5'" sing N N 84 DG "C5'" "C4'" sing N N 85 DG "C5'" "H5'" sing N N 86 DG "C5'" "H5''" sing N N 87 DG "C4'" "O4'" sing N N 88 DG "C4'" "C3'" sing N N 89 DG "C4'" "H4'" sing N N 90 DG "O4'" "C1'" sing N N 91 DG "C3'" "O3'" sing N N 92 DG "C3'" "C2'" sing N N 93 DG "C3'" "H3'" sing N N 94 DG "O3'" "HO3'" sing N N 95 DG "C2'" "C1'" sing N N 96 DG "C2'" "H2'" sing N N 97 DG "C2'" "H2''" sing N N 98 DG "C1'" N9 sing N N 99 DG "C1'" "H1'" sing N N 100 DG N9 C8 sing Y N 101 DG N9 C4 sing Y N 102 DG C8 N7 doub Y N 103 DG C8 H8 sing N N 104 DG N7 C5 sing Y N 105 DG C5 C6 sing N N 106 DG C5 C4 doub Y N 107 DG C6 O6 doub N N 108 DG C6 N1 sing N N 109 DG N1 C2 sing N N 110 DG N1 H1 sing N N 111 DG C2 N2 sing N N 112 DG C2 N3 doub N N 113 DG N2 H21 sing N N 114 DG N2 H22 sing N N 115 DG N3 C4 sing N N 116 DT OP3 P sing N N 117 DT OP3 HOP3 sing N N 118 DT P OP1 doub N N 119 DT P OP2 sing N N 120 DT P "O5'" sing N N 121 DT OP2 HOP2 sing N N 122 DT "O5'" "C5'" sing N N 123 DT "C5'" "C4'" sing N N 124 DT "C5'" "H5'" sing N N 125 DT "C5'" "H5''" sing N N 126 DT "C4'" "O4'" sing N N 127 DT "C4'" "C3'" sing N N 128 DT "C4'" "H4'" sing N N 129 DT "O4'" "C1'" sing N N 130 DT "C3'" "O3'" sing N N 131 DT "C3'" "C2'" sing N N 132 DT "C3'" "H3'" sing N N 133 DT "O3'" "HO3'" sing N N 134 DT "C2'" "C1'" sing N N 135 DT "C2'" "H2'" sing N N 136 DT "C2'" "H2''" sing N N 137 DT "C1'" N1 sing N N 138 DT "C1'" "H1'" sing N N 139 DT N1 C2 sing N N 140 DT N1 C6 sing N N 141 DT C2 O2 doub N N 142 DT C2 N3 sing N N 143 DT N3 C4 sing N N 144 DT N3 H3 sing N N 145 DT C4 O4 doub N N 146 DT C4 C5 sing N N 147 DT C5 C7 sing N N 148 DT C5 C6 doub N N 149 DT C7 H71 sing N N 150 DT C7 H72 sing N N 151 DT C7 H73 sing N N 152 DT C6 H6 sing N N 153 HOH O H1 sing N N 154 HOH O H2 sing N N 155 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 6JKN 'double helix' 6JKN 'quadruple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 3 1_555 A DG 7 1_555 -1.487 3.473 0.030 -1.856 -15.485 88.865 1 A_DG3:DG7_A A 3 ? A 7 ? 6 3 1 A DG 19 1_555 A DG 15 1_555 1.532 -3.481 -0.436 14.661 15.595 -88.644 2 A_DG19:DG15_A A 19 ? A 15 ? 6 3 1 A BGM 8 1_555 A DG 14 1_555 -1.389 3.501 -0.500 18.170 0.068 90.921 3 A_BGM8:DG14_A A 8 ? A 14 ? 6 3 1 A DA 6 1_555 A DA 18 1_555 -5.585 5.202 0.078 -19.808 35.229 -178.563 4 A_DA6:DA18_A A 6 ? A 18 ? 2 7 1 A DG 9 1_555 A DG 13 1_555 -1.680 -3.372 -0.440 9.457 11.930 91.046 5 A_DG9:DG13_A A 9 ? A 13 ? 6 3 1 A DT 10 1_555 A DA 12 1_555 -0.440 3.683 0.177 -16.879 -24.274 -63.675 6 A_DT10:DA12_A A 10 ? A 12 ? 23 3 1 A DG 2 1_555 A BGM 20 1_555 -1.508 -3.405 -0.268 18.675 -3.241 92.117 7 A_DG2:BGM20_A A 2 ? A 20 ? 6 3 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 3 1_555 A DG 7 1_555 A DG 19 1_555 A DG 15 1_555 -1.510 3.358 0.188 9.347 12.936 179.243 1.679 0.755 0.190 6.468 -4.674 179.251 1 AA_DG3DG19:DG15DG7_AA A 3 ? A 7 ? A 19 ? A 15 ? 1 A DG 19 1_555 A DG 15 1_555 A BGM 8 1_555 A DG 14 1_555 -1.456 2.514 3.573 -5.549 11.048 117.361 1.343 0.788 3.755 6.457 3.243 117.766 2 AA_DG19BGM8:DG14DG15_AA A 19 ? A 15 ? A 8 ? A 14 ? 1 A DG 9 1_555 A DG 13 1_555 A DT 10 1_555 A DA 12 1_555 -4.065 -0.514 0.096 -94.813 128.937 177.938 -0.258 2.032 0.131 64.470 47.407 179.643 3 AA_DG9DT10:DA12DG13_AA A 9 ? A 13 ? A 10 ? A 12 ? # _atom_sites.entry_id 6JKN _atom_sites.fract_transf_matrix[1][1] 0.021621 _atom_sites.fract_transf_matrix[1][2] 0.012483 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.024965 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008330 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol BR C K N O P # loop_