HEADER SIGNALING PROTEIN 03-MAR-19 6JKY TITLE CRYSTAL STRUCTURE OF MVCA-UBE2N-UB COMPLEX FROM LEGIONELLA PNEUMOPHILA COMPND MOL_ID: 1; COMPND 2 MOLECULE: MVCA; COMPND 3 CHAIN: A, D; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: UBIQUITIN-CONJUGATING ENZYME E2 N; COMPND 8 CHAIN: B, E; COMPND 9 SYNONYM: BENDLESS-LIKE UBIQUITIN-CONJUGATING ENZYME,E2 UBIQUITIN- COMPND 10 CONJUGATING ENZYME N; COMPND 11 EC: 2.3.2.23; COMPND 12 ENGINEERED: YES; COMPND 13 MUTATION: YES; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: UB; COMPND 16 CHAIN: C, F; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEGIONELLA PNEUMOPHILA SUBSP. PNEUMOPHILA STR. SOURCE 3 PHILADELPHIA 1; SOURCE 4 ORGANISM_TAXID: 272624; SOURCE 5 STRAIN: PHILADELPHIA 1; SOURCE 6 GENE: LPG2148; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: UBE2N; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 MOL_ID: 3; SOURCE 17 ORGANISM_SCIENTIFIC: SCHISTOSOMA MARGREBOWIEI; SOURCE 18 ORGANISM_TAXID: 48269; SOURCE 19 GENE: SMRZ_LOCUS12712; SOURCE 20 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 22 EXPRESSION_SYSTEM_STRAIN: K-12 KEYWDS LEGIONELLA PNEUMOPHILA EFFECT FACTOR COMPLEX, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.Y.OUYANG,H.GUAN REVDAT 3 22-NOV-23 6JKY 1 REMARK REVDAT 2 15-APR-20 6JKY 1 TITLE JRNL REVDAT 1 18-DEC-19 6JKY 0 JRNL AUTH N.GAN,H.GUAN,Y.HUANG,T.YU,J.FU,E.S.NAKAYASU,K.PUVAR,C.DAS, JRNL AUTH 2 D.WANG,S.OUYANG,Z.Q.LUO JRNL TITL LEGIONELLA PNEUMOPHILA REGULATES THE ACTIVITY OF UBE2N BY JRNL TITL 2 DEAMIDASE-MEDIATED DEUBIQUITINATION. JRNL REF EMBO J. V. 39 02806 2020 JRNL REFN ESSN 1460-2075 JRNL PMID 31825121 JRNL DOI 10.15252/EMBJ.2019102806 REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 65.14 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 52683 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 2639 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 65.1000 - 6.5465 0.99 2914 127 0.1657 0.2041 REMARK 3 2 6.5465 - 5.1968 0.97 2694 161 0.1938 0.2279 REMARK 3 3 5.1968 - 4.5401 1.00 2760 149 0.1656 0.1886 REMARK 3 4 4.5401 - 4.1251 1.00 2723 130 0.1696 0.2211 REMARK 3 5 4.1251 - 3.8294 0.99 2757 143 0.2002 0.2676 REMARK 3 6 3.8294 - 3.6037 0.99 2687 142 0.2313 0.2568 REMARK 3 7 3.6037 - 3.4232 1.00 2746 126 0.2273 0.2785 REMARK 3 8 3.4232 - 3.2742 1.00 2711 142 0.2290 0.3343 REMARK 3 9 3.2742 - 3.1482 1.00 2725 135 0.2432 0.2642 REMARK 3 10 3.1482 - 3.0395 0.98 2701 130 0.2622 0.3350 REMARK 3 11 3.0395 - 2.9445 0.99 2667 153 0.2643 0.3357 REMARK 3 12 2.9445 - 2.8603 0.99 2661 138 0.2654 0.3078 REMARK 3 13 2.8603 - 2.7850 1.00 2733 125 0.2599 0.3135 REMARK 3 14 2.7850 - 2.7171 1.00 2690 145 0.2645 0.3476 REMARK 3 15 2.7171 - 2.6553 0.97 1201 77 0.3237 0.4662 REMARK 3 16 2.6553 - 2.5988 0.98 2645 127 0.3097 0.3884 REMARK 3 17 2.5988 - 2.5468 1.00 2671 162 0.2791 0.3255 REMARK 3 18 2.5468 - 2.4987 1.00 2647 163 0.2865 0.3475 REMARK 3 19 2.4987 - 2.4541 1.00 2711 164 0.2951 0.3596 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.400 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.740 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 58.29 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 79.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 9917 REMARK 3 ANGLE : 0.704 13404 REMARK 3 CHIRALITY : 0.045 1479 REMARK 3 PLANARITY : 0.005 1748 REMARK 3 DIHEDRAL : 6.471 6108 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -42.7003 -18.1782 -32.7830 REMARK 3 T TENSOR REMARK 3 T11: 0.4267 T22: 0.4543 REMARK 3 T33: 0.4031 T12: 0.1622 REMARK 3 T13: 0.0237 T23: 0.0216 REMARK 3 L TENSOR REMARK 3 L11: 0.1909 L22: -0.0180 REMARK 3 L33: 0.2085 L12: 0.1858 REMARK 3 L13: 0.3508 L23: -0.0259 REMARK 3 S TENSOR REMARK 3 S11: 0.0502 S12: -0.0338 S13: 0.0169 REMARK 3 S21: 0.0143 S22: -0.0290 S23: -0.0280 REMARK 3 S31: -0.0048 S32: -0.0229 S33: 0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6JKY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-MAR-19. REMARK 100 THE DEPOSITION ID IS D_1300011261. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-NOV-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97894 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52753 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 65.140 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.54700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 6K11 AND 1JAT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM THIOCYANATE, 20% W/V REMARK 280 POLYETHYLENE GLYCOL 3,350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 131.92250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 131.92250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 52.16250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 53.80250 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 52.16250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 53.80250 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 131.92250 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 52.16250 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 53.80250 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 131.92250 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 52.16250 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 53.80250 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 11 REMARK 465 MET B 1 REMARK 465 ASN B 151 REMARK 465 ILE B 152 REMARK 465 CYS C -2 REMARK 465 GLY C 75 REMARK 465 GLY C 76 REMARK 465 ALA D 11 REMARK 465 SER D 12 REMARK 465 ASP D 394 REMARK 465 ILE D 395 REMARK 465 MET E 1 REMARK 465 ALA E 2 REMARK 465 ASN E 151 REMARK 465 ILE E 152 REMARK 465 CYS F -2 REMARK 465 GLY F -1 REMARK 465 GLY F 75 REMARK 465 GLY F 76 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN C 40 NE2 REMARK 470 GLN F 40 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS E 92 CD GLN F 40 1.20 REMARK 500 NZ LYS B 92 CD GLN C 40 1.22 REMARK 500 NZ LYS B 92 OE1 GLN C 40 1.94 REMARK 500 OE1 GLU A 78 NH2 ARG A 378 2.12 REMARK 500 O GLY D 199 OH TYR D 204 2.13 REMARK 500 OH TYR D 284 O HOH D 401 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS B 92 CD - CE - NZ ANGL. DEV. = 16.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 124 30.81 -85.86 REMARK 500 ASP A 142 69.15 -116.58 REMARK 500 ILE A 198 -78.43 -97.01 REMARK 500 SER A 270 -69.32 -137.68 REMARK 500 ASP A 280 19.99 57.93 REMARK 500 HIS A 329 -118.72 60.70 REMARK 500 CYS B 87 -77.89 -53.85 REMARK 500 PRO B 97 7.22 -69.13 REMARK 500 ALA B 114 79.53 -154.43 REMARK 500 ASP B 118 89.78 -69.11 REMARK 500 ASP B 119 -110.20 -162.98 REMARK 500 THR B 131 -73.90 -54.35 REMARK 500 ASN B 132 76.81 -118.06 REMARK 500 SER C 0 104.28 -57.67 REMARK 500 GLU D 14 -166.26 -116.93 REMARK 500 LYS D 57 -6.55 59.33 REMARK 500 LEU D 61 38.35 -83.65 REMARK 500 LYS D 62 -41.98 -148.80 REMARK 500 SER D 129 -16.63 -140.43 REMARK 500 ASP D 142 73.51 -119.63 REMARK 500 ASP D 200 -77.60 69.05 REMARK 500 SER D 243 -66.79 -106.98 REMARK 500 GLN D 260 -70.47 -117.08 REMARK 500 PHE D 261 136.53 76.86 REMARK 500 SER D 270 -73.33 -123.84 REMARK 500 HIS D 329 -118.09 59.82 REMARK 500 LEU E 4 133.38 -177.30 REMARK 500 PRO E 5 114.55 -32.88 REMARK 500 ASP E 81 -152.08 -88.20 REMARK 500 LEU E 88 15.80 54.36 REMARK 500 PRO E 97 -9.22 -59.83 REMARK 500 ALA E 114 84.14 -155.31 REMARK 500 ALA F 46 60.72 39.08 REMARK 500 REMARK 500 REMARK: NULL DBREF 6JKY A 13 395 UNP Q5ZTL3 Q5ZTL3_LEGPH 13 395 DBREF 6JKY B 1 152 UNP P61088 UBE2N_HUMAN 1 152 DBREF1 6JKY C 1 76 UNP A0A3P7ZMV6_9TREM DBREF2 6JKY C A0A3P7ZMV6 92 167 DBREF 6JKY D 13 395 UNP Q5ZTL3 Q5ZTL3_LEGPH 13 395 DBREF 6JKY E 1 152 UNP P61088 UBE2N_HUMAN 1 152 DBREF1 6JKY F 1 76 UNP A0A3P7ZMV6_9TREM DBREF2 6JKY F A0A3P7ZMV6 92 167 SEQADV 6JKY ALA A 11 UNP Q5ZTL3 EXPRESSION TAG SEQADV 6JKY SER A 12 UNP Q5ZTL3 EXPRESSION TAG SEQADV 6JKY ALA A 83 UNP Q5ZTL3 CYS 83 ENGINEERED MUTATION SEQADV 6JKY ALA B 94 UNP P61088 LYS 94 ENGINEERED MUTATION SEQADV 6JKY CYS C -2 UNP A0A3P7ZMV EXPRESSION TAG SEQADV 6JKY GLY C -1 UNP A0A3P7ZMV EXPRESSION TAG SEQADV 6JKY SER C 0 UNP A0A3P7ZMV EXPRESSION TAG SEQADV 6JKY ALA D 11 UNP Q5ZTL3 EXPRESSION TAG SEQADV 6JKY SER D 12 UNP Q5ZTL3 EXPRESSION TAG SEQADV 6JKY ALA D 83 UNP Q5ZTL3 CYS 83 ENGINEERED MUTATION SEQADV 6JKY ALA E 94 UNP P61088 LYS 94 ENGINEERED MUTATION SEQADV 6JKY CYS F -2 UNP A0A3P7ZMV EXPRESSION TAG SEQADV 6JKY GLY F -1 UNP A0A3P7ZMV EXPRESSION TAG SEQADV 6JKY SER F 0 UNP A0A3P7ZMV EXPRESSION TAG SEQRES 1 A 385 ALA SER LEU GLU SER PRO GLY PHE MET VAL HIS LYS LYS SEQRES 2 A 385 LEU LYS SER MET SER GLN SER TYR GLY VAL MET MET THR SEQRES 3 A 385 GLY VAL PRO ALA GLU VAL LEU GLY GLN MET GLN ALA GLU SEQRES 4 A 385 ARG SER ILE PRO SER ILE ASN LYS THR GLY ASN LEU LYS SEQRES 5 A 385 GLN GLN ILE ALA LYS GLU VAL SER LYS VAL CYS HIS MET SEQRES 6 A 385 MET THR GLU PRO THR GLN SER ALA GLY GLN ALA SER ASN SEQRES 7 A 385 ASP VAL CYS GLU LEU LEU LEU GLY LYS ILE GLU ALA GLU SEQRES 8 A 385 LYS PHE HIS PHE THR LYS TYR GLU ALA LEU SER ALA ASP SEQRES 9 A 385 GLY ASP ASN LEU LYS ASN VAL LEU GLU ASN THR ALA PRO SEQRES 10 A 385 SER SER THR ASN LEU LEU ILE ARG PHE GLU ILE ASP ARG SEQRES 11 A 385 GLU ASP PRO PRO ILE VAL LEU VAL LYS THR LYS ASN GLU SEQRES 12 A 385 ASN PHE ASN PRO GLU THR ALA VAL LYS ASN LYS ILE TYR SEQRES 13 A 385 LEU LEU GLU ASN LYS LEU TYR PHE ILE ASP LYS MET GLY SEQRES 14 A 385 ASN LEU PHE ASN LEU GLY PRO GLY LYS LYS LYS CYS THR SEQRES 15 A 385 GLN LEU PHE ASN ALA ILE GLY ASP SER ALA GLU TYR SER SEQRES 16 A 385 LEU CYS ASP PRO PHE VAL LEU GLU GLU PRO GLU LYS PRO SEQRES 17 A 385 GLU ASP PHE ALA ILE SER GLU ILE VAL ASP ILE PHE ASN SEQRES 18 A 385 GLU GLN LYS GLU ARG PHE ASP PHE TRP ILE GLY SER HIS SEQRES 19 A 385 SER PHE THR ILE TYR ILE PRO GLN THR LEU GLY GLU SER SEQRES 20 A 385 PRO ARG GLN PHE TYR PRO TYR GLN ALA TYR PHE GLY SER SEQRES 21 A 385 HIS THR LEU GLN ASP TRP PHE VAL SER ASP LYS ASP GLU SEQRES 22 A 385 TYR LEU SER ARG ILE GLY ILE ASP LYS TYR ILE GLU LYS SEQRES 23 A 385 LEU ALA VAL LEU GLY LYS THR THR ASN THR LYS GLU ARG SEQRES 24 A 385 SER ASP ILE TYR ALA GLU PHE PHE SER LYS ARG GLY ARG SEQRES 25 A 385 GLU ALA PHE PHE CYS ALA HIS LEU ASN GLU LYS ARG GLN SEQRES 26 A 385 PRO LEU ARG VAL LYS PHE LYS ILE THR GLU ILE ASN PRO SEQRES 27 A 385 GLU LEU ALA LEU LYS ASN LEU GLN GLU THR GLN GLU PHE SEQRES 28 A 385 ILE ASP THR HIS PRO GLY GLU ASN PRO SER ASP LYS VAL SEQRES 29 A 385 GLU ASN TYR ARG ASN ARG ALA LYS LEU ALA MET THR GLU SEQRES 30 A 385 HIS LEU GLU SER LEU LEU ASP ILE SEQRES 1 B 152 MET ALA GLY LEU PRO ARG ARG ILE ILE LYS GLU THR GLN SEQRES 2 B 152 ARG LEU LEU ALA GLU PRO VAL PRO GLY ILE LYS ALA GLU SEQRES 3 B 152 PRO ASP GLU SER ASN ALA ARG TYR PHE HIS VAL VAL ILE SEQRES 4 B 152 ALA GLY PRO GLN ASP SER PRO PHE GLU GLY GLY THR PHE SEQRES 5 B 152 LYS LEU GLU LEU PHE LEU PRO GLU GLU TYR PRO MET ALA SEQRES 6 B 152 ALA PRO LYS VAL ARG PHE MET THR LYS ILE TYR HIS PRO SEQRES 7 B 152 ASN VAL ASP LYS LEU GLY ARG ILE CYS LEU ASP ILE LEU SEQRES 8 B 152 LYS ASP ALA TRP SER PRO ALA LEU GLN ILE ARG THR VAL SEQRES 9 B 152 LEU LEU SER ILE GLN ALA LEU LEU SER ALA PRO ASN PRO SEQRES 10 B 152 ASP ASP PRO LEU ALA ASN ASP VAL ALA GLU GLN TRP LYS SEQRES 11 B 152 THR ASN GLU ALA GLN ALA ILE GLU THR ALA ARG ALA TRP SEQRES 12 B 152 THR ARG LEU TYR ALA MET ASN ASN ILE SEQRES 1 C 79 CYS GLY SER MET GLN ILE PHE VAL LYS THR LEU THR GLY SEQRES 2 C 79 LYS THR ILE THR LEU GLU VAL GLU PRO SER ASP THR ILE SEQRES 3 C 79 GLU ASN VAL LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE SEQRES 4 C 79 PRO PRO ASP GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN SEQRES 5 C 79 LEU GLU ASP GLY ARG THR LEU SER ASP TYR ASN ILE GLN SEQRES 6 C 79 LYS GLU SER THR LEU HIS LEU VAL LEU ARG LEU ARG GLY SEQRES 7 C 79 GLY SEQRES 1 D 385 ALA SER LEU GLU SER PRO GLY PHE MET VAL HIS LYS LYS SEQRES 2 D 385 LEU LYS SER MET SER GLN SER TYR GLY VAL MET MET THR SEQRES 3 D 385 GLY VAL PRO ALA GLU VAL LEU GLY GLN MET GLN ALA GLU SEQRES 4 D 385 ARG SER ILE PRO SER ILE ASN LYS THR GLY ASN LEU LYS SEQRES 5 D 385 GLN GLN ILE ALA LYS GLU VAL SER LYS VAL CYS HIS MET SEQRES 6 D 385 MET THR GLU PRO THR GLN SER ALA GLY GLN ALA SER ASN SEQRES 7 D 385 ASP VAL CYS GLU LEU LEU LEU GLY LYS ILE GLU ALA GLU SEQRES 8 D 385 LYS PHE HIS PHE THR LYS TYR GLU ALA LEU SER ALA ASP SEQRES 9 D 385 GLY ASP ASN LEU LYS ASN VAL LEU GLU ASN THR ALA PRO SEQRES 10 D 385 SER SER THR ASN LEU LEU ILE ARG PHE GLU ILE ASP ARG SEQRES 11 D 385 GLU ASP PRO PRO ILE VAL LEU VAL LYS THR LYS ASN GLU SEQRES 12 D 385 ASN PHE ASN PRO GLU THR ALA VAL LYS ASN LYS ILE TYR SEQRES 13 D 385 LEU LEU GLU ASN LYS LEU TYR PHE ILE ASP LYS MET GLY SEQRES 14 D 385 ASN LEU PHE ASN LEU GLY PRO GLY LYS LYS LYS CYS THR SEQRES 15 D 385 GLN LEU PHE ASN ALA ILE GLY ASP SER ALA GLU TYR SER SEQRES 16 D 385 LEU CYS ASP PRO PHE VAL LEU GLU GLU PRO GLU LYS PRO SEQRES 17 D 385 GLU ASP PHE ALA ILE SER GLU ILE VAL ASP ILE PHE ASN SEQRES 18 D 385 GLU GLN LYS GLU ARG PHE ASP PHE TRP ILE GLY SER HIS SEQRES 19 D 385 SER PHE THR ILE TYR ILE PRO GLN THR LEU GLY GLU SER SEQRES 20 D 385 PRO ARG GLN PHE TYR PRO TYR GLN ALA TYR PHE GLY SER SEQRES 21 D 385 HIS THR LEU GLN ASP TRP PHE VAL SER ASP LYS ASP GLU SEQRES 22 D 385 TYR LEU SER ARG ILE GLY ILE ASP LYS TYR ILE GLU LYS SEQRES 23 D 385 LEU ALA VAL LEU GLY LYS THR THR ASN THR LYS GLU ARG SEQRES 24 D 385 SER ASP ILE TYR ALA GLU PHE PHE SER LYS ARG GLY ARG SEQRES 25 D 385 GLU ALA PHE PHE CYS ALA HIS LEU ASN GLU LYS ARG GLN SEQRES 26 D 385 PRO LEU ARG VAL LYS PHE LYS ILE THR GLU ILE ASN PRO SEQRES 27 D 385 GLU LEU ALA LEU LYS ASN LEU GLN GLU THR GLN GLU PHE SEQRES 28 D 385 ILE ASP THR HIS PRO GLY GLU ASN PRO SER ASP LYS VAL SEQRES 29 D 385 GLU ASN TYR ARG ASN ARG ALA LYS LEU ALA MET THR GLU SEQRES 30 D 385 HIS LEU GLU SER LEU LEU ASP ILE SEQRES 1 E 152 MET ALA GLY LEU PRO ARG ARG ILE ILE LYS GLU THR GLN SEQRES 2 E 152 ARG LEU LEU ALA GLU PRO VAL PRO GLY ILE LYS ALA GLU SEQRES 3 E 152 PRO ASP GLU SER ASN ALA ARG TYR PHE HIS VAL VAL ILE SEQRES 4 E 152 ALA GLY PRO GLN ASP SER PRO PHE GLU GLY GLY THR PHE SEQRES 5 E 152 LYS LEU GLU LEU PHE LEU PRO GLU GLU TYR PRO MET ALA SEQRES 6 E 152 ALA PRO LYS VAL ARG PHE MET THR LYS ILE TYR HIS PRO SEQRES 7 E 152 ASN VAL ASP LYS LEU GLY ARG ILE CYS LEU ASP ILE LEU SEQRES 8 E 152 LYS ASP ALA TRP SER PRO ALA LEU GLN ILE ARG THR VAL SEQRES 9 E 152 LEU LEU SER ILE GLN ALA LEU LEU SER ALA PRO ASN PRO SEQRES 10 E 152 ASP ASP PRO LEU ALA ASN ASP VAL ALA GLU GLN TRP LYS SEQRES 11 E 152 THR ASN GLU ALA GLN ALA ILE GLU THR ALA ARG ALA TRP SEQRES 12 E 152 THR ARG LEU TYR ALA MET ASN ASN ILE SEQRES 1 F 79 CYS GLY SER MET GLN ILE PHE VAL LYS THR LEU THR GLY SEQRES 2 F 79 LYS THR ILE THR LEU GLU VAL GLU PRO SER ASP THR ILE SEQRES 3 F 79 GLU ASN VAL LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE SEQRES 4 F 79 PRO PRO ASP GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN SEQRES 5 F 79 LEU GLU ASP GLY ARG THR LEU SER ASP TYR ASN ILE GLN SEQRES 6 F 79 LYS GLU SER THR LEU HIS LEU VAL LEU ARG LEU ARG GLY SEQRES 7 F 79 GLY FORMUL 7 HOH *63(H2 O) HELIX 1 AA1 SER A 15 GLY A 32 1 18 HELIX 2 AA2 VAL A 33 GLY A 37 5 5 HELIX 3 AA3 PRO A 39 ILE A 52 1 14 HELIX 4 AA4 ASN A 60 CYS A 73 1 14 HELIX 5 AA5 SER A 82 GLY A 96 1 15 HELIX 6 AA6 GLY A 96 THR A 106 1 11 HELIX 7 AA7 GLY A 115 ASN A 124 1 10 HELIX 8 AA8 LYS A 151 PHE A 155 5 5 HELIX 9 AA9 GLY A 187 GLY A 199 1 13 HELIX 10 AB1 ASP A 208 GLU A 214 1 7 HELIX 11 AB2 LYS A 217 GLN A 233 1 17 HELIX 12 AB3 LYS A 234 PHE A 237 5 4 HELIX 13 AB4 THR A 272 SER A 279 1 8 HELIX 14 AB5 ASP A 280 ARG A 287 1 8 HELIX 15 AB6 GLY A 289 THR A 303 1 15 HELIX 16 AB7 ASN A 305 SER A 318 1 14 HELIX 17 AB8 ALA A 328 GLU A 332 5 5 HELIX 18 AB9 ASN A 347 THR A 364 1 18 HELIX 19 AC1 ASN A 369 LEU A 393 1 25 HELIX 20 AC2 PRO B 5 GLU B 18 1 14 HELIX 21 AC3 GLN B 100 ALA B 114 1 15 HELIX 22 AC4 ASN B 123 ASN B 132 1 10 HELIX 23 AC5 ASN B 132 ALA B 148 1 17 HELIX 24 AC6 THR C 22 GLY C 35 1 14 HELIX 25 AC7 PRO C 37 GLN C 41 5 5 HELIX 26 AC8 LEU C 56 ASN C 60 5 5 HELIX 27 AC9 SER D 15 GLY D 32 1 18 HELIX 28 AD1 VAL D 33 GLY D 37 5 5 HELIX 29 AD2 PRO D 39 SER D 51 1 13 HELIX 30 AD3 ILE D 52 ILE D 55 5 4 HELIX 31 AD4 LYS D 62 THR D 77 1 16 HELIX 32 AD5 SER D 82 GLY D 96 1 15 HELIX 33 AD6 GLY D 96 PHE D 105 1 10 HELIX 34 AD7 GLY D 115 THR D 125 1 11 HELIX 35 AD8 LYS D 151 PHE D 155 5 5 HELIX 36 AD9 GLY D 187 ALA D 197 1 11 HELIX 37 AE1 ASP D 208 GLU D 213 1 6 HELIX 38 AE2 LYS D 217 GLN D 233 1 17 HELIX 39 AE3 LYS D 234 PHE D 237 5 4 HELIX 40 AE4 THR D 272 SER D 279 1 8 HELIX 41 AE5 ASP D 280 SER D 286 1 7 HELIX 42 AE6 GLY D 289 THR D 303 1 15 HELIX 43 AE7 ASN D 305 SER D 318 1 14 HELIX 44 AE8 ARG D 322 CYS D 327 1 6 HELIX 45 AE9 ALA D 328 GLU D 332 5 5 HELIX 46 AF1 ASN D 347 THR D 364 1 18 HELIX 47 AF2 ASN D 369 LEU D 392 1 24 HELIX 48 AF3 PRO E 5 GLU E 18 1 14 HELIX 49 AF4 GLN E 100 ALA E 114 1 15 HELIX 50 AF5 ASN E 123 ASN E 132 1 10 HELIX 51 AF6 ASN E 132 ALA E 148 1 17 HELIX 52 AF7 THR F 22 GLY F 35 1 14 HELIX 53 AF8 PRO F 37 GLN F 41 5 5 HELIX 54 AF9 THR F 55 TYR F 59 5 5 SHEET 1 AA1 5 GLU A 109 ALA A 110 0 SHEET 2 AA1 5 LEU A 337 GLU A 345 -1 O PHE A 341 N GLU A 109 SHEET 3 AA1 5 LEU A 132 GLU A 141 -1 N LEU A 133 O THR A 344 SHEET 4 AA1 5 TRP A 240 ILE A 250 -1 O PHE A 246 N PHE A 136 SHEET 5 AA1 5 TYR A 262 TYR A 264 -1 O TYR A 264 N THR A 247 SHEET 1 AA2 5 LEU A 181 ASN A 183 0 SHEET 2 AA2 5 LEU A 172 ILE A 175 -1 N PHE A 174 O PHE A 182 SHEET 3 AA2 5 LYS A 164 LEU A 167 -1 N TYR A 166 O TYR A 173 SHEET 4 AA2 5 VAL A 146 LYS A 149 1 N VAL A 148 O ILE A 165 SHEET 5 AA2 5 GLU A 203 SER A 205 -1 O TYR A 204 N LEU A 147 SHEET 1 AA3 4 ILE B 23 PRO B 27 0 SHEET 2 AA3 4 TYR B 34 ALA B 40 -1 O VAL B 38 N LYS B 24 SHEET 3 AA3 4 THR B 51 PHE B 57 -1 O LEU B 54 N VAL B 37 SHEET 4 AA3 4 LYS B 68 PHE B 71 -1 O LYS B 68 N PHE B 57 SHEET 1 AA4 5 THR C 12 VAL C 17 0 SHEET 2 AA4 5 MET C 1 LYS C 6 -1 N MET C 1 O VAL C 17 SHEET 3 AA4 5 THR C 66 VAL C 70 1 O LEU C 69 N LYS C 6 SHEET 4 AA4 5 ARG C 42 PHE C 45 -1 N ARG C 42 O VAL C 70 SHEET 5 AA4 5 LYS C 48 GLN C 49 -1 O LYS C 48 N PHE C 45 SHEET 1 AA5 5 GLU D 109 ALA D 110 0 SHEET 2 AA5 5 LEU D 337 GLU D 345 -1 O PHE D 341 N GLU D 109 SHEET 3 AA5 5 LEU D 132 GLU D 141 -1 N GLU D 137 O LYS D 340 SHEET 4 AA5 5 TRP D 240 ILE D 250 -1 O PHE D 246 N PHE D 136 SHEET 5 AA5 5 TYR D 262 TYR D 264 -1 O TYR D 264 N THR D 247 SHEET 1 AA6 5 LEU D 181 ASN D 183 0 SHEET 2 AA6 5 LEU D 172 ILE D 175 -1 N PHE D 174 O PHE D 182 SHEET 3 AA6 5 LYS D 164 LEU D 167 -1 N TYR D 166 O TYR D 173 SHEET 4 AA6 5 VAL D 146 LYS D 149 1 N VAL D 148 O ILE D 165 SHEET 5 AA6 5 GLU D 203 SER D 205 -1 O TYR D 204 N LEU D 147 SHEET 1 AA7 4 ILE E 23 PRO E 27 0 SHEET 2 AA7 4 PHE E 35 ILE E 39 -1 O HIS E 36 N GLU E 26 SHEET 3 AA7 4 PHE E 52 PHE E 57 -1 O LEU E 56 N PHE E 35 SHEET 4 AA7 4 LYS E 68 PHE E 71 -1 O LYS E 68 N PHE E 57 SHEET 1 AA8 5 THR F 12 VAL F 17 0 SHEET 2 AA8 5 MET F 1 LYS F 6 -1 N VAL F 5 O ILE F 13 SHEET 3 AA8 5 THR F 66 VAL F 70 1 O LEU F 67 N PHE F 4 SHEET 4 AA8 5 ARG F 42 PHE F 45 -1 N ARG F 42 O VAL F 70 SHEET 5 AA8 5 LYS F 48 LEU F 50 -1 O LEU F 50 N LEU F 43 CISPEP 1 TYR B 62 PRO B 63 0 1.25 CISPEP 2 TYR E 62 PRO E 63 0 5.37 CRYST1 104.325 107.605 263.845 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009585 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009293 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003790 0.00000