HEADER HYDROLASE 03-MAR-19 6JKZ TITLE CRYSTAL STRUCTURE OF VVPLPA FROM VIBRIO VULNIFICUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: THERMOLABILE HEMOLYSIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO VULNIFICUS; SOURCE 3 ORGANISM_TAXID: 672; SOURCE 4 GENE: CRN61_10355; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS VIBRIO, PHOSPHOLIPASE, SGNH HYDROLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Q.MA,Y.WAN,C.LIU REVDAT 4 23-OCT-24 6JKZ 1 HETSYN REVDAT 3 14-AUG-19 6JKZ 1 JRNL REVDAT 2 29-MAY-19 6JKZ 1 JRNL REVDAT 1 15-MAY-19 6JKZ 0 JRNL AUTH Y.WAN,C.LIU,Q.MA JRNL TITL STRUCTURAL ANALYSIS OF AVIBRIOPHOSPHOLIPASE REVEALS AN JRNL TITL 2 UNUSUAL SER-HIS-CHLORIDE CATALYTIC TRIAD. JRNL REF J.BIOL.CHEM. V. 294 11391 2019 JRNL REFN ESSN 1083-351X JRNL PMID 31073025 JRNL DOI 10.1074/JBC.RA119.008280 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 79896 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 4078 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.0059 - 4.2912 0.98 2861 157 0.1640 0.1766 REMARK 3 2 4.2912 - 3.4064 1.00 2709 155 0.1365 0.1691 REMARK 3 3 3.4064 - 2.9759 1.00 2701 145 0.1613 0.1608 REMARK 3 4 2.9759 - 2.7038 1.00 2662 136 0.1682 0.1893 REMARK 3 5 2.7038 - 2.5101 1.00 2688 135 0.1671 0.2027 REMARK 3 6 2.5101 - 2.3621 1.00 2647 121 0.1599 0.1905 REMARK 3 7 2.3621 - 2.2438 1.00 2607 164 0.1675 0.1928 REMARK 3 8 2.2438 - 2.1461 1.00 2656 136 0.1617 0.1743 REMARK 3 9 2.1461 - 2.0635 1.00 2621 132 0.1586 0.1931 REMARK 3 10 2.0635 - 1.9923 1.00 2641 124 0.1676 0.2019 REMARK 3 11 1.9923 - 1.9300 1.00 2605 150 0.1744 0.2181 REMARK 3 12 1.9300 - 1.8748 0.99 2551 165 0.1937 0.2285 REMARK 3 13 1.8748 - 1.8255 1.00 2653 110 0.1809 0.2090 REMARK 3 14 1.8255 - 1.7809 1.00 2631 135 0.1834 0.2069 REMARK 3 15 1.7809 - 1.7404 1.00 2547 138 0.1843 0.1818 REMARK 3 16 1.7404 - 1.7034 1.00 2600 162 0.1795 0.1878 REMARK 3 17 1.7034 - 1.6693 1.00 2615 136 0.1801 0.2287 REMARK 3 18 1.6693 - 1.6378 1.00 2582 124 0.1721 0.2205 REMARK 3 19 1.6378 - 1.6086 1.00 2624 132 0.1850 0.1968 REMARK 3 20 1.6086 - 1.5813 1.00 2588 144 0.1916 0.1808 REMARK 3 21 1.5813 - 1.5558 1.00 2564 148 0.1903 0.2335 REMARK 3 22 1.5558 - 1.5319 1.00 2599 140 0.1935 0.2381 REMARK 3 23 1.5319 - 1.5093 1.00 2557 142 0.1983 0.2186 REMARK 3 24 1.5093 - 1.4881 1.00 2576 157 0.2125 0.2188 REMARK 3 25 1.4881 - 1.4680 1.00 2534 141 0.2144 0.2494 REMARK 3 26 1.4680 - 1.4489 1.00 2626 138 0.2285 0.2512 REMARK 3 27 1.4489 - 1.4308 1.00 2544 145 0.2255 0.2648 REMARK 3 28 1.4308 - 1.4135 0.98 2571 132 0.2367 0.2388 REMARK 3 29 1.4135 - 1.3971 0.96 2458 134 0.2473 0.2735 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.100 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.460 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3373 REMARK 3 ANGLE : 0.951 4607 REMARK 3 CHIRALITY : 0.078 484 REMARK 3 PLANARITY : 0.007 602 REMARK 3 DIHEDRAL : 16.071 1197 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 24:41) REMARK 3 ORIGIN FOR THE GROUP (A): 9.5656 0.5240 91.1474 REMARK 3 T TENSOR REMARK 3 T11: 0.3372 T22: 0.3795 REMARK 3 T33: 0.3668 T12: 0.0936 REMARK 3 T13: 0.0024 T23: -0.0422 REMARK 3 L TENSOR REMARK 3 L11: 0.2100 L22: 0.1594 REMARK 3 L33: 0.0702 L12: -0.0219 REMARK 3 L13: -0.0582 L23: 0.0128 REMARK 3 S TENSOR REMARK 3 S11: -0.1971 S12: -0.0421 S13: -0.2940 REMARK 3 S21: -0.0816 S22: -0.1148 S23: 0.0007 REMARK 3 S31: 0.2453 S32: 0.0458 S33: -0.0007 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 42:136) REMARK 3 ORIGIN FOR THE GROUP (A): -8.2810 15.0659 82.1569 REMARK 3 T TENSOR REMARK 3 T11: 0.1548 T22: 0.2518 REMARK 3 T33: 0.2029 T12: 0.0243 REMARK 3 T13: -0.0053 T23: -0.0540 REMARK 3 L TENSOR REMARK 3 L11: 1.5860 L22: 0.4817 REMARK 3 L33: 1.0035 L12: -0.5985 REMARK 3 L13: -0.0691 L23: 0.0282 REMARK 3 S TENSOR REMARK 3 S11: 0.0421 S12: 0.2281 S13: -0.1414 REMARK 3 S21: -0.0114 S22: -0.0288 S23: 0.0677 REMARK 3 S31: 0.0920 S32: 0.0121 S33: -0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 137:210) REMARK 3 ORIGIN FOR THE GROUP (A): -7.0563 18.8329 96.2263 REMARK 3 T TENSOR REMARK 3 T11: 0.1535 T22: 0.2418 REMARK 3 T33: 0.2063 T12: 0.0398 REMARK 3 T13: 0.0140 T23: -0.0102 REMARK 3 L TENSOR REMARK 3 L11: 0.9298 L22: 0.4391 REMARK 3 L33: 0.5853 L12: -0.5606 REMARK 3 L13: 0.2178 L23: 0.1195 REMARK 3 S TENSOR REMARK 3 S11: -0.0449 S12: -0.0487 S13: -0.1057 REMARK 3 S21: 0.0615 S22: 0.0464 S23: 0.0673 REMARK 3 S31: 0.0193 S32: 0.0248 S33: 0.0005 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 211:242) REMARK 3 ORIGIN FOR THE GROUP (A): 5.5040 12.9122 98.9571 REMARK 3 T TENSOR REMARK 3 T11: 0.2067 T22: 0.2772 REMARK 3 T33: 0.2308 T12: 0.0846 REMARK 3 T13: 0.0063 T23: -0.0186 REMARK 3 L TENSOR REMARK 3 L11: 0.3823 L22: 0.5510 REMARK 3 L33: 0.4971 L12: 0.1852 REMARK 3 L13: 0.3148 L23: 0.2426 REMARK 3 S TENSOR REMARK 3 S11: -0.0261 S12: -0.0475 S13: -0.0925 REMARK 3 S21: 0.1352 S22: 0.1113 S23: -0.0612 REMARK 3 S31: 0.1410 S32: 0.2189 S33: 0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 243:276) REMARK 3 ORIGIN FOR THE GROUP (A): 0.6423 17.1047 112.3012 REMARK 3 T TENSOR REMARK 3 T11: 0.2322 T22: 0.3457 REMARK 3 T33: 0.2106 T12: 0.1108 REMARK 3 T13: 0.0302 T23: 0.0274 REMARK 3 L TENSOR REMARK 3 L11: 0.3026 L22: 0.6864 REMARK 3 L33: 0.6406 L12: 0.0640 REMARK 3 L13: 0.3519 L23: 0.4859 REMARK 3 S TENSOR REMARK 3 S11: -0.1590 S12: -0.0775 S13: -0.2101 REMARK 3 S21: 0.1357 S22: 0.0966 S23: 0.1255 REMARK 3 S31: 0.2527 S32: -0.2490 S33: -0.0032 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 277:302) REMARK 3 ORIGIN FOR THE GROUP (A): -12.0099 27.0430 114.6490 REMARK 3 T TENSOR REMARK 3 T11: 0.2134 T22: 0.4034 REMARK 3 T33: 0.2395 T12: 0.1063 REMARK 3 T13: 0.0077 T23: -0.0154 REMARK 3 L TENSOR REMARK 3 L11: 0.3568 L22: 0.0435 REMARK 3 L33: 0.2998 L12: 0.1291 REMARK 3 L13: 0.3479 L23: 0.1352 REMARK 3 S TENSOR REMARK 3 S11: -0.0252 S12: -0.2685 S13: 0.1373 REMARK 3 S21: 0.0153 S22: 0.0652 S23: 0.0364 REMARK 3 S31: -0.0116 S32: -0.1924 S33: -0.0038 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 303:336) REMARK 3 ORIGIN FOR THE GROUP (A): 3.7923 27.9135 112.8655 REMARK 3 T TENSOR REMARK 3 T11: 0.2071 T22: 0.3420 REMARK 3 T33: 0.2065 T12: 0.1035 REMARK 3 T13: -0.0107 T23: -0.0356 REMARK 3 L TENSOR REMARK 3 L11: 0.1083 L22: 0.3580 REMARK 3 L33: 0.5203 L12: 0.1052 REMARK 3 L13: 0.1226 L23: 0.3955 REMARK 3 S TENSOR REMARK 3 S11: -0.1947 S12: -0.3636 S13: 0.1486 REMARK 3 S21: 0.0011 S22: 0.1751 S23: 0.0645 REMARK 3 S31: -0.0256 S32: 0.1344 S33: -0.0034 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 337:422) REMARK 3 ORIGIN FOR THE GROUP (A): -13.4435 32.1133 100.9229 REMARK 3 T TENSOR REMARK 3 T11: 0.1704 T22: 0.2623 REMARK 3 T33: 0.2149 T12: 0.0764 REMARK 3 T13: -0.0014 T23: -0.0272 REMARK 3 L TENSOR REMARK 3 L11: 1.2922 L22: 0.4050 REMARK 3 L33: 0.7329 L12: -0.2325 REMARK 3 L13: 0.2451 L23: 0.1144 REMARK 3 S TENSOR REMARK 3 S11: -0.0969 S12: -0.1093 S13: 0.1352 REMARK 3 S21: 0.0358 S22: 0.1019 S23: 0.0389 REMARK 3 S31: -0.1429 S32: -0.1175 S33: -0.0074 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6JKZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-MAR-19. REMARK 100 THE DEPOSITION ID IS D_1300011266. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-APR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 79933 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.397 REMARK 200 RESOLUTION RANGE LOW (A) : 46.902 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 18.80 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06700 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 22.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.6 REMARK 200 DATA REDUNDANCY IN SHELL : 12.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.88800 REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXDE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5 UL OF PROTEIN SOLUTION (8 MG/ML IN REMARK 280 THE BUFFER 10 MM HEPES, 150 MM NACL, PH 7.5) AND 1.5 UL OF REMARK 280 RESERVOIR SOLUTION CONTAINING 500 MM NACL, 10 MM MGCL2, 180 MM REMARK 280 NDSB-201, 30% GLYCERINE., VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 77.71433 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 155.42867 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 155.42867 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 77.71433 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 617 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 GLY A 1 REMARK 465 LYS A 2 REMARK 465 LYS A 3 REMARK 465 ILE A 4 REMARK 465 THR A 5 REMARK 465 ILE A 6 REMARK 465 LEU A 7 REMARK 465 LEU A 8 REMARK 465 GLY A 9 REMARK 465 ALA A 10 REMARK 465 LEU A 11 REMARK 465 LEU A 12 REMARK 465 PRO A 13 REMARK 465 PHE A 14 REMARK 465 THR A 15 REMARK 465 SER A 16 REMARK 465 ALA A 17 REMARK 465 VAL A 18 REMARK 465 ALA A 19 REMARK 465 ASP A 20 REMARK 465 GLU A 21 REMARK 465 PRO A 22 REMARK 465 ALA A 23 REMARK 465 VAL A 84 REMARK 465 ARG A 85 REMARK 465 LEU A 86 REMARK 465 HIS A 423 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 140 -126.71 -101.90 REMARK 500 ASP A 151 -146.14 -126.99 REMARK 500 LEU A 175 72.92 22.02 REMARK 500 SER A 179 -176.85 -170.40 REMARK 500 VAL A 211 122.39 -176.34 REMARK 500 SER A 381 146.55 86.15 REMARK 500 TRP A 388 -72.47 -86.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 970 DISTANCE = 6.34 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PS A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PS A 503 DBREF1 6JKZ A 2 417 UNP A0A2S3SYP4_VIBVL DBREF2 6JKZ A A0A2S3SYP4 2 417 SEQADV 6JKZ MET A 0 UNP A0A2S3SYP INITIATING METHIONINE SEQADV 6JKZ GLY A 1 UNP A0A2S3SYP EXPRESSION TAG SEQADV 6JKZ HIS A 418 UNP A0A2S3SYP EXPRESSION TAG SEQADV 6JKZ HIS A 419 UNP A0A2S3SYP EXPRESSION TAG SEQADV 6JKZ HIS A 420 UNP A0A2S3SYP EXPRESSION TAG SEQADV 6JKZ HIS A 421 UNP A0A2S3SYP EXPRESSION TAG SEQADV 6JKZ HIS A 422 UNP A0A2S3SYP EXPRESSION TAG SEQADV 6JKZ HIS A 423 UNP A0A2S3SYP EXPRESSION TAG SEQRES 1 A 424 MET GLY LYS LYS ILE THR ILE LEU LEU GLY ALA LEU LEU SEQRES 2 A 424 PRO PHE THR SER ALA VAL ALA ASP GLU PRO ALA LEU SER SEQRES 3 A 424 PRO GLU ALA ILE THR SER ALA GLN VAL PHE SER THR GLN SEQRES 4 A 424 SER LYS GLU THR TYR THR TYR VAL ARG CYS TRP TYR ARG SEQRES 5 A 424 THR GLY ASN SER HIS ASP GLU SER ALA THR ASP TRP GLU SEQRES 6 A 424 TRP ALA GLU ASN PRO ASP GLY SER TYR PHE THR ILE ASP SEQRES 7 A 424 GLY TYR TRP TRP SER SER VAL ARG LEU LYS ASN MET PHE SEQRES 8 A 424 TYR THR ASN THR SER GLN ASN VAL ILE LYS GLN ARG CYS SEQRES 9 A 424 GLU GLU THR LEU GLY VAL THR HIS ASP ALA ALA ASP ILE SEQRES 10 A 424 THR TYR PHE ALA ALA ASP ASN ARG TRP SER TYR ASN HIS SEQRES 11 A 424 THR ILE TRP THR ASN ASP PRO VAL MET GLN ALA ASP GLN SEQRES 12 A 424 ILE ASN LYS ILE VAL ALA PHE GLY ASP SER LEU SER ASP SEQRES 13 A 424 THR GLY ASN ILE PHE ASN ALA ALA GLN TRP ARG PHE PRO SEQRES 14 A 424 ASN PRO ASP THR TRP PHE LEU GLY HIS PHE SER ASN GLY SEQRES 15 A 424 PHE VAL TRP THR GLU TYR ILE ALA GLN ALA LYS LYS LEU SEQRES 16 A 424 PRO LEU TYR ASN TRP ALA VAL GLY GLY ALA ALA GLY SER SEQRES 17 A 424 ASN GLN TYR VAL ALA LEU THR GLY VAL LYS ASP GLN VAL SEQRES 18 A 424 LEU SER TYR LEU THR TYR ALA LYS MET ALA LYS ASN TYR SEQRES 19 A 424 LYS PRO GLU ASN THR LEU PHE THR LEU GLU PHE GLY LEU SEQRES 20 A 424 ASN ASP PHE MET ASN TYR ASN ARG GLU VAL VAL ASP VAL SEQRES 21 A 424 LYS THR ASP PHE SER THR ALA LEU ILE LYS LEU THR ASP SEQRES 22 A 424 ALA GLY ALA LYS ASN ILE MET LEU MET THR LEU PRO ASP SEQRES 23 A 424 ALA THR LYS ALA PRO GLN PHE LYS TYR SER THR GLN ALA SEQRES 24 A 424 GLU ILE GLU LYS VAL ARG ALA LYS ILE VAL GLU PHE ASN SEQRES 25 A 424 GLU PHE ILE LYS ALA GLN ALA ALA PHE TYR ILE ILE GLN SEQRES 26 A 424 GLY TYR ASN ILE THR LEU TYR ASP THR HIS GLY LEU PHE SEQRES 27 A 424 GLU GLN LEU THR GLN ASN PRO GLN GLN HIS GLY PHE VAL SEQRES 28 A 424 ASN ALA SER ASP ALA CYS LEU ASN ILE ASN ARG ALA SER SEQRES 29 A 424 SER ALA ASP TYR LEU TYR SER HIS SER LEU THR ASN GLU SEQRES 30 A 424 CYS ALA THR HIS SER SER ASP LYS TYR VAL PHE TRP GLY SEQRES 31 A 424 VAL THR HIS PRO THR THR ALA VAL HIS LYS TYR ILE ALA SEQRES 32 A 424 GLU LYS MET LEU ALA PRO GLY ALA GLY MET GLN ARG PHE SEQRES 33 A 424 ASN PHE HIS HIS HIS HIS HIS HIS HET CL A 501 1 HET 1PS A 502 13 HET 1PS A 503 13 HETNAM CL CHLORIDE ION HETNAM 1PS 3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE HETSYN 1PS 1-(3-SULFOPROPYL) PYRIDINIUM; PPS FORMUL 2 CL CL 1- FORMUL 3 1PS 2(C8 H11 N O3 S) FORMUL 5 HOH *370(H2 O) HELIX 1 AA1 SER A 25 ILE A 29 5 5 HELIX 2 AA2 THR A 30 SER A 39 1 10 HELIX 3 AA3 SER A 95 GLY A 108 1 14 HELIX 4 AA4 GLY A 157 ALA A 163 1 7 HELIX 5 AA5 VAL A 183 LYS A 193 1 11 HELIX 6 AA6 GLY A 206 TYR A 210 5 5 HELIX 7 AA7 GLY A 215 LYS A 228 1 14 HELIX 8 AA8 LYS A 234 GLU A 236 5 3 HELIX 9 AA9 GLY A 245 ASN A 251 1 7 HELIX 10 AB1 GLU A 255 ALA A 273 1 19 HELIX 11 AB2 ASP A 285 SER A 295 5 11 HELIX 12 AB3 THR A 296 GLN A 324 1 29 HELIX 13 AB4 ASP A 332 ASN A 343 1 12 HELIX 14 AB5 PRO A 344 GLY A 348 5 5 HELIX 15 AB6 SER A 363 TYR A 369 5 7 HELIX 16 AB7 THR A 374 SER A 381 1 8 HELIX 17 AB8 THR A 394 ALA A 407 1 14 HELIX 18 AB9 GLY A 411 PHE A 415 5 5 SHEET 1 AA1 3 THR A 61 TRP A 65 0 SHEET 2 AA1 3 THR A 42 ARG A 51 -1 N CYS A 48 O GLU A 64 SHEET 3 AA1 3 THR A 117 ALA A 121 -1 O THR A 117 N TRP A 49 SHEET 1 AA2 5 THR A 61 TRP A 65 0 SHEET 2 AA2 5 THR A 42 ARG A 51 -1 N CYS A 48 O GLU A 64 SHEET 3 AA2 5 THR A 75 TRP A 81 -1 O GLY A 78 N THR A 42 SHEET 4 AA2 5 MET A 89 THR A 92 -1 O TYR A 91 N TYR A 79 SHEET 5 AA2 5 ILE A 131 THR A 133 1 O TRP A 132 N PHE A 90 SHEET 1 AA3 5 LEU A 196 ASN A 198 0 SHEET 2 AA3 5 LYS A 145 PHE A 149 1 N ILE A 146 O TYR A 197 SHEET 3 AA3 5 THR A 238 LEU A 242 1 O LEU A 239 N LYS A 145 SHEET 4 AA3 5 ASN A 277 MET A 281 1 O MET A 279 N PHE A 240 SHEET 5 AA3 5 ASN A 327 TYR A 331 1 O THR A 329 N LEU A 280 SHEET 1 AA4 2 ASN A 351 ALA A 355 0 SHEET 2 AA4 2 TYR A 385 PHE A 387 1 O VAL A 386 N ASN A 351 SSBOND 1 CYS A 48 CYS A 103 1555 1555 2.05 SSBOND 2 CYS A 356 CYS A 377 1555 1555 2.03 CISPEP 1 PHE A 167 PRO A 168 0 -7.66 SITE 1 AC1 3 TRP A 173 GLY A 389 HIS A 392 SITE 1 AC2 10 LYS A 87 THR A 130 ASN A 158 ASN A 198 SITE 2 AC2 10 TRP A 199 VAL A 201 HOH A 683 HOH A 739 SITE 3 AC2 10 HOH A 780 HOH A 797 SITE 1 AC3 6 TYR A 45 TRP A 65 TYR A 73 ASP A 122 SITE 2 AC3 6 ASN A 123 ARG A 124 CRYST1 54.158 54.158 233.143 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018464 0.010660 0.000000 0.00000 SCALE2 0.000000 0.021321 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004289 0.00000