HEADER HYDROLASE 09-MAR-19 6JMG TITLE CRYSTAL STRUCTURE OF XRBJ COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNAJ HOMOLOG SUBFAMILY C MEMBER 27-A; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: RAB AND DNAJ DOMAIN-CONTAINING PROTEIN 1,RAB AND DNAJ COMPND 5 DOMAIN-CONTAINING PROTEIN A; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XENOPUS LAEVIS; SOURCE 3 ORGANISM_COMMON: AFRICAN CLAWED FROG; SOURCE 4 ORGANISM_TAXID: 8355; SOURCE 5 GENE: DNAJC27-A, RBJ-A, RBJ1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SMALL GTPASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Z.R.GAO,J.X.QI REVDAT 2 27-MAR-24 6JMG 1 LINK REVDAT 1 11-MAR-20 6JMG 0 JRNL AUTH Z.R.GAO,J.X.QI JRNL TITL CRYSTAL STRUCTURE OF RBJ JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.14_3260: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 31078 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 1542 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.2069 - 6.0017 0.99 2918 166 0.2115 0.2761 REMARK 3 2 6.0017 - 4.7660 1.00 2743 167 0.2046 0.2359 REMARK 3 3 4.7660 - 4.1642 1.00 2707 139 0.1676 0.1963 REMARK 3 4 4.1642 - 3.7838 1.00 2694 142 0.1858 0.2373 REMARK 3 5 3.7838 - 3.5127 1.00 2654 148 0.2134 0.2383 REMARK 3 6 3.5127 - 3.3057 1.00 2664 134 0.2196 0.2832 REMARK 3 7 3.3057 - 3.1402 1.00 2664 115 0.2334 0.2589 REMARK 3 8 3.1402 - 3.0036 1.00 2607 148 0.2479 0.3061 REMARK 3 9 3.0036 - 2.8880 1.00 2659 124 0.2574 0.3208 REMARK 3 10 2.8880 - 2.7883 1.00 2628 116 0.2622 0.3778 REMARK 3 11 2.7883 - 2.7012 1.00 2598 143 0.2602 0.3085 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.500 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 4359 REMARK 3 ANGLE : 1.183 5878 REMARK 3 CHIRALITY : 0.064 626 REMARK 3 PLANARITY : 0.007 750 REMARK 3 DIHEDRAL : 11.620 2612 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 7.6331 32.3181 -45.4079 REMARK 3 T TENSOR REMARK 3 T11: 0.4705 T22: 0.5460 REMARK 3 T33: 0.6142 T12: 0.0750 REMARK 3 T13: -0.1242 T23: -0.1143 REMARK 3 L TENSOR REMARK 3 L11: 0.2412 L22: 0.4714 REMARK 3 L33: 1.2107 L12: 0.3000 REMARK 3 L13: -0.0170 L23: 0.0164 REMARK 3 S TENSOR REMARK 3 S11: 0.0504 S12: -0.0067 S13: 0.0358 REMARK 3 S21: -0.0461 S22: -0.0416 S23: 0.0974 REMARK 3 S31: -0.1844 S32: -0.0320 S33: -0.0168 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6JMG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-MAR-19. REMARK 100 THE DEPOSITION ID IS D_1300011378. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-SEP-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97910 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31168 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 19.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS PH 6.5, 28% (W/V) REMARK 280 POLYETHYLENE GLYCOL MONOMETHYL ETHER 2000, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 106.74900 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 213.49800 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 160.12350 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 266.87250 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 53.37450 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 106.74900 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 213.49800 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 266.87250 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 160.12350 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 53.37450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 THR A 3 REMARK 465 ASN A 4 REMARK 465 LEU A 5 REMARK 465 GLN A 6 REMARK 465 LYS A 7 REMARK 465 ARG A 8 REMARK 465 LYS A 9 REMARK 465 ASP A 10 REMARK 465 SER A 11 REMARK 465 ARG A 12 REMARK 465 LYS A 13 REMARK 465 HIS A 281 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 THR B 3 REMARK 465 ASN B 4 REMARK 465 LEU B 5 REMARK 465 GLN B 6 REMARK 465 LYS B 7 REMARK 465 ARG B 8 REMARK 465 LYS B 9 REMARK 465 ASP B 10 REMARK 465 SER B 11 REMARK 465 ARG B 12 REMARK 465 LYS B 13 REMARK 465 HIS B 277 REMARK 465 HIS B 278 REMARK 465 HIS B 279 REMARK 465 HIS B 280 REMARK 465 HIS B 281 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS B 29 O1G GTP B 301 1.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS B 29 CD - CE - NZ ANGL. DEV. = 16.1 DEGREES REMARK 500 MET B 72 CG - SD - CE ANGL. DEV. = 11.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 61 -124.09 61.03 REMARK 500 LYS A 135 33.39 71.73 REMARK 500 HIS A 141 121.25 -39.85 REMARK 500 ASN A 198 73.92 -153.47 REMARK 500 ASN A 214 43.04 -103.47 REMARK 500 HIS A 279 -90.67 -87.91 REMARK 500 LYS B 61 -123.76 62.44 REMARK 500 LYS B 135 37.46 74.14 REMARK 500 HIS B 141 121.98 -38.14 REMARK 500 ASN B 214 45.50 -106.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS B 61 ASP B 62 148.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 30 OG REMARK 620 2 THR A 48 OG1 88.2 REMARK 620 3 GTP A 301 O1G 171.5 88.3 REMARK 620 4 GTP A 301 O2B 91.1 176.1 91.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 30 OG REMARK 620 2 THR B 48 OG1 86.0 REMARK 620 3 GTP B 301 O3G 171.7 97.5 REMARK 620 4 GTP B 301 O2B 86.8 172.5 89.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GTP A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide GTP B 301 and LYS B REMARK 800 29 DBREF 6JMG A 1 273 UNP Q7ZYF1 DJ27A_XENLA 1 273 DBREF 6JMG B 1 273 UNP Q7ZYF1 DJ27A_XENLA 1 273 SEQADV 6JMG LEU A 274 UNP Q7ZYF1 EXPRESSION TAG SEQADV 6JMG GLU A 275 UNP Q7ZYF1 EXPRESSION TAG SEQADV 6JMG HIS A 276 UNP Q7ZYF1 EXPRESSION TAG SEQADV 6JMG HIS A 277 UNP Q7ZYF1 EXPRESSION TAG SEQADV 6JMG HIS A 278 UNP Q7ZYF1 EXPRESSION TAG SEQADV 6JMG HIS A 279 UNP Q7ZYF1 EXPRESSION TAG SEQADV 6JMG HIS A 280 UNP Q7ZYF1 EXPRESSION TAG SEQADV 6JMG HIS A 281 UNP Q7ZYF1 EXPRESSION TAG SEQADV 6JMG LEU B 274 UNP Q7ZYF1 EXPRESSION TAG SEQADV 6JMG GLU B 275 UNP Q7ZYF1 EXPRESSION TAG SEQADV 6JMG HIS B 276 UNP Q7ZYF1 EXPRESSION TAG SEQADV 6JMG HIS B 277 UNP Q7ZYF1 EXPRESSION TAG SEQADV 6JMG HIS B 278 UNP Q7ZYF1 EXPRESSION TAG SEQADV 6JMG HIS B 279 UNP Q7ZYF1 EXPRESSION TAG SEQADV 6JMG HIS B 280 UNP Q7ZYF1 EXPRESSION TAG SEQADV 6JMG HIS B 281 UNP Q7ZYF1 EXPRESSION TAG SEQRES 1 A 281 MET GLU THR ASN LEU GLN LYS ARG LYS ASP SER ARG LYS SEQRES 2 A 281 ALA LEU ARG ILE LYS VAL ILE SER MET GLY ASN ALA GLU SEQRES 3 A 281 VAL GLY LYS SER CYS ILE ILE LYS ARG TYR CYS GLU LYS SEQRES 4 A 281 ARG PHE VAL PRO LYS TYR GLN ALA THR ILE GLY ILE ASP SEQRES 5 A 281 TYR GLY VAL THR LYS VAL HIS ILE LYS ASP ARG GLU ILE SEQRES 6 A 281 LYS VAL ASN ILE PHE ASP MET ALA GLY HIS PRO PHE PHE SEQRES 7 A 281 TYR GLU VAL ARG ASN GLU PHE TYR LYS ASP THR GLN GLY SEQRES 8 A 281 VAL ILE LEU VAL TYR ASP VAL GLY HIS LYS GLU THR PHE SEQRES 9 A 281 GLU SER LEU ASP GLY TRP LEU ALA GLU MET LYS GLN GLU SEQRES 10 A 281 LEU GLY PRO GLN GLY ASN ILE ASP ASN ILE VAL PHE ALA SEQRES 11 A 281 VAL CYS ALA ASN LYS ILE ASP SER THR LYS HIS ARG SER SEQRES 12 A 281 VAL ASP GLU SER GLU GLY ARG LEU TRP SER GLU SER LYS SEQRES 13 A 281 GLY PHE LEU TYR PHE GLU THR SER ALA GLN SER GLY GLU SEQRES 14 A 281 GLY ILE ASN GLU MET PHE GLN ALA PHE TYR SER ALA ILE SEQRES 15 A 281 VAL ASP LEU CYS ASP ASN GLY GLY LYS ARG PRO VAL SER SEQRES 16 A 281 ALA ILE ASN ILE GLY PHE THR LYS GLU GLN ALA ASP SER SEQRES 17 A 281 ILE ARG ARG ILE ARG ASN CYS LYS ASP SER TRP ASP MET SEQRES 18 A 281 LEU GLY VAL LYS PRO GLY ALA THR ARG ASP GLU VAL ASN SEQRES 19 A 281 LYS ALA TYR ARG LYS LEU ALA VAL LEU LEU HIS PRO ASP SEQRES 20 A 281 LYS CYS MET ALA PRO GLY SER GLU ASP ALA PHE LYS ALA SEQRES 21 A 281 VAL VAL ASN ALA ARG THR ALA LEU LEU LYS ASN ILE LYS SEQRES 22 A 281 LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 281 MET GLU THR ASN LEU GLN LYS ARG LYS ASP SER ARG LYS SEQRES 2 B 281 ALA LEU ARG ILE LYS VAL ILE SER MET GLY ASN ALA GLU SEQRES 3 B 281 VAL GLY LYS SER CYS ILE ILE LYS ARG TYR CYS GLU LYS SEQRES 4 B 281 ARG PHE VAL PRO LYS TYR GLN ALA THR ILE GLY ILE ASP SEQRES 5 B 281 TYR GLY VAL THR LYS VAL HIS ILE LYS ASP ARG GLU ILE SEQRES 6 B 281 LYS VAL ASN ILE PHE ASP MET ALA GLY HIS PRO PHE PHE SEQRES 7 B 281 TYR GLU VAL ARG ASN GLU PHE TYR LYS ASP THR GLN GLY SEQRES 8 B 281 VAL ILE LEU VAL TYR ASP VAL GLY HIS LYS GLU THR PHE SEQRES 9 B 281 GLU SER LEU ASP GLY TRP LEU ALA GLU MET LYS GLN GLU SEQRES 10 B 281 LEU GLY PRO GLN GLY ASN ILE ASP ASN ILE VAL PHE ALA SEQRES 11 B 281 VAL CYS ALA ASN LYS ILE ASP SER THR LYS HIS ARG SER SEQRES 12 B 281 VAL ASP GLU SER GLU GLY ARG LEU TRP SER GLU SER LYS SEQRES 13 B 281 GLY PHE LEU TYR PHE GLU THR SER ALA GLN SER GLY GLU SEQRES 14 B 281 GLY ILE ASN GLU MET PHE GLN ALA PHE TYR SER ALA ILE SEQRES 15 B 281 VAL ASP LEU CYS ASP ASN GLY GLY LYS ARG PRO VAL SER SEQRES 16 B 281 ALA ILE ASN ILE GLY PHE THR LYS GLU GLN ALA ASP SER SEQRES 17 B 281 ILE ARG ARG ILE ARG ASN CYS LYS ASP SER TRP ASP MET SEQRES 18 B 281 LEU GLY VAL LYS PRO GLY ALA THR ARG ASP GLU VAL ASN SEQRES 19 B 281 LYS ALA TYR ARG LYS LEU ALA VAL LEU LEU HIS PRO ASP SEQRES 20 B 281 LYS CYS MET ALA PRO GLY SER GLU ASP ALA PHE LYS ALA SEQRES 21 B 281 VAL VAL ASN ALA ARG THR ALA LEU LEU LYS ASN ILE LYS SEQRES 22 B 281 LEU GLU HIS HIS HIS HIS HIS HIS HET GTP A 301 32 HET MG A 302 1 HET GTP B 301 32 HET MG B 302 1 HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 3 GTP 2(C10 H16 N5 O14 P3) FORMUL 4 MG 2(MG 2+) FORMUL 7 HOH *14(H2 O) HELIX 1 AA1 GLY A 28 LYS A 39 1 12 HELIX 2 AA2 HIS A 75 PHE A 77 5 3 HELIX 3 AA3 PHE A 78 ASN A 83 1 6 HELIX 4 AA4 GLU A 84 TYR A 86 5 3 HELIX 5 AA5 HIS A 100 SER A 106 1 7 HELIX 6 AA6 SER A 106 LEU A 118 1 13 HELIX 7 AA7 ASN A 123 ILE A 127 5 5 HELIX 8 AA8 ASP A 145 SER A 155 1 11 HELIX 9 AA9 GLY A 170 ASN A 188 1 19 HELIX 10 AB1 SER A 195 ILE A 199 5 5 HELIX 11 AB2 THR A 202 ASN A 214 1 13 HELIX 12 AB3 ASP A 217 GLY A 223 1 7 HELIX 13 AB4 THR A 229 HIS A 245 1 17 HELIX 14 AB5 GLY A 253 HIS A 279 1 27 HELIX 15 AB6 GLY B 28 LYS B 39 1 12 HELIX 16 AB7 HIS B 75 PHE B 77 5 3 HELIX 17 AB8 PHE B 78 ASN B 83 1 6 HELIX 18 AB9 GLU B 84 TYR B 86 5 3 HELIX 19 AC1 HIS B 100 SER B 106 1 7 HELIX 20 AC2 SER B 106 GLY B 119 1 14 HELIX 21 AC3 ASN B 123 ILE B 127 5 5 HELIX 22 AC4 ASP B 145 SER B 155 1 11 HELIX 23 AC5 GLY B 170 ASN B 188 1 19 HELIX 24 AC6 THR B 202 ASN B 214 1 13 HELIX 25 AC7 ASP B 217 GLY B 223 1 7 HELIX 26 AC8 THR B 229 HIS B 245 1 17 HELIX 27 AC9 GLY B 253 HIS B 276 1 24 SHEET 1 AA1 6 ILE A 51 ILE A 60 0 SHEET 2 AA1 6 ARG A 63 MET A 72 -1 O ILE A 69 N GLY A 54 SHEET 3 AA1 6 LEU A 15 MET A 22 1 N LEU A 15 O LYS A 66 SHEET 4 AA1 6 GLY A 91 ASP A 97 1 O ILE A 93 N ILE A 20 SHEET 5 AA1 6 VAL A 128 ASN A 134 1 O CYS A 132 N LEU A 94 SHEET 6 AA1 6 LEU A 159 THR A 163 1 O LEU A 159 N VAL A 131 SHEET 1 AA2 6 ILE B 51 ILE B 60 0 SHEET 2 AA2 6 ARG B 63 MET B 72 -1 O VAL B 67 N THR B 56 SHEET 3 AA2 6 LEU B 15 MET B 22 1 N LEU B 15 O LYS B 66 SHEET 4 AA2 6 GLY B 91 ASP B 97 1 O VAL B 95 N MET B 22 SHEET 5 AA2 6 VAL B 128 ASN B 134 1 O ASN B 134 N TYR B 96 SHEET 6 AA2 6 LEU B 159 THR B 163 1 O LEU B 159 N VAL B 131 LINK OG SER A 30 MG MG A 302 1555 1555 1.97 LINK OG1 THR A 48 MG MG A 302 1555 1555 2.15 LINK O1G GTP A 301 MG MG A 302 1555 1555 1.94 LINK O2B GTP A 301 MG MG A 302 1555 1555 2.02 LINK OG SER B 30 MG MG B 302 1555 1555 2.02 LINK OG1 THR B 48 MG MG B 302 1555 1555 2.16 LINK O3G GTP B 301 MG MG B 302 1555 1555 1.98 LINK O2B GTP B 301 MG MG B 302 1555 1555 2.12 SITE 1 AC1 24 ALA A 25 GLU A 26 VAL A 27 GLY A 28 SITE 2 AC1 24 LYS A 29 SER A 30 CYS A 31 PHE A 41 SITE 3 AC1 24 VAL A 42 PRO A 43 TYR A 45 ALA A 47 SITE 4 AC1 24 THR A 48 GLY A 74 ASN A 134 LYS A 135 SITE 5 AC1 24 ASP A 137 SER A 164 ALA A 165 GLN A 166 SITE 6 AC1 24 MG A 302 HOH A 401 HOH A 405 HOH A 406 SITE 1 AC2 5 SER A 30 THR A 48 GTP A 301 HOH A 401 SITE 2 AC2 5 HOH A 406 SITE 1 AC3 5 SER B 30 THR B 48 GTP B 301 HOH B 401 SITE 2 AC3 5 HOH B 402 SITE 1 AC4 26 GLY B 23 ASN B 24 ALA B 25 GLU B 26 SITE 2 AC4 26 VAL B 27 GLY B 28 SER B 30 CYS B 31 SITE 3 AC4 26 ILE B 32 ILE B 33 PHE B 41 VAL B 42 SITE 4 AC4 26 PRO B 43 TYR B 45 THR B 48 MET B 72 SITE 5 AC4 26 GLY B 74 ASN B 134 LYS B 135 ASP B 137 SITE 6 AC4 26 SER B 164 ALA B 165 GLN B 166 MG B 302 SITE 7 AC4 26 HOH B 401 HOH B 402 CRYST1 107.630 107.630 320.247 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009291 0.005364 0.000000 0.00000 SCALE2 0.000000 0.010728 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003123 0.00000