HEADER TRANSCRIPTION 11-MAR-19 6JMI TITLE CRYSTAL STRUCTURE OF M.TUBERCULOSIS RV0081 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED HTH-TYPE TRANSCRIPTIONAL REGULATOR RV0081; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: UNP RESIDUES 2-114; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS H37RV; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: H37RV; SOURCE 5 GENE: RV0081; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS HYPOXIA, ARSR/SMTB, FHL REGULATOR, REGULATORY HUB, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR A.KUMAR,S.PHULERA,C.S.MANDE REVDAT 4 27-MAR-24 6JMI 1 REMARK REVDAT 3 22-MAY-19 6JMI 1 JRNL REVDAT 2 17-APR-19 6JMI 1 JRNL REVDAT 1 10-APR-19 6JMI 0 SPRSDE 10-APR-19 6JMI 5XPQ JRNL AUTH A.KUMAR,S.PHULERA,A.RIZVI,P.J.SONAWANE,H.S.PANWAR, JRNL AUTH 2 S.BANERJEE,A.SAHU,S.C.MANDE JRNL TITL STRUCTURAL BASIS OF HYPOXIC GENE REGULATION BY THE RV0081 JRNL TITL 2 TRANSCRIPTION FACTOR OF MYCOBACTERIUM TUBERCULOSIS. JRNL REF FEBS LETT. V. 593 982 2019 JRNL REFN ISSN 0014-5793 JRNL PMID 30941756 JRNL DOI 10.1002/1873-3468.13375 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.14_3260: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.58 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 12660 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.265 REMARK 3 R VALUE (WORKING SET) : 0.261 REMARK 3 FREE R VALUE : 0.301 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.980 REMARK 3 FREE R VALUE TEST SET COUNT : 1264 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.5803 - 6.0191 0.99 1408 158 0.2356 0.2686 REMARK 3 2 6.0191 - 4.7792 1.00 1300 144 0.2497 0.3151 REMARK 3 3 4.7792 - 4.1755 1.00 1279 143 0.2230 0.2308 REMARK 3 4 4.1755 - 3.7939 1.00 1265 140 0.2499 0.3247 REMARK 3 5 3.7939 - 3.5221 1.00 1235 136 0.2758 0.3282 REMARK 3 6 3.5221 - 3.3145 1.00 1246 139 0.3017 0.3411 REMARK 3 7 3.3145 - 3.1486 1.00 1253 132 0.3492 0.3114 REMARK 3 8 3.1486 - 3.0115 1.00 1221 138 0.3422 0.4322 REMARK 3 9 3.0115 - 2.8956 0.97 1189 134 0.3532 0.3901 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.460 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.300 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 78.52 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 2806 REMARK 3 ANGLE : 0.469 3802 REMARK 3 CHIRALITY : 0.034 481 REMARK 3 PLANARITY : 0.003 477 REMARK 3 DIHEDRAL : 6.697 1722 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 3:102 ) REMARK 3 ORIGIN FOR THE GROUP (A): 155.3144 52.5655 351.0791 REMARK 3 T TENSOR REMARK 3 T11: 0.3547 T22: 0.5964 REMARK 3 T33: 0.5566 T12: 0.0150 REMARK 3 T13: 0.0177 T23: -0.0038 REMARK 3 L TENSOR REMARK 3 L11: 1.9505 L22: 3.2800 REMARK 3 L33: 5.6726 L12: -0.5298 REMARK 3 L13: -0.3779 L23: -0.6114 REMARK 3 S TENSOR REMARK 3 S11: -0.1662 S12: -0.0595 S13: -0.3847 REMARK 3 S21: 0.0676 S22: 0.1397 S23: 0.2012 REMARK 3 S31: 0.1666 S32: 0.2045 S33: -0.0635 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN B AND RESID 4:102 ) REMARK 3 ORIGIN FOR THE GROUP (A): 144.0283 58.4122 388.6136 REMARK 3 T TENSOR REMARK 3 T11: 0.3960 T22: 0.6417 REMARK 3 T33: 0.5216 T12: 0.0055 REMARK 3 T13: 0.0895 T23: -0.1815 REMARK 3 L TENSOR REMARK 3 L11: 2.6274 L22: 1.9594 REMARK 3 L33: 2.8354 L12: 0.1192 REMARK 3 L13: 2.0219 L23: -0.6252 REMARK 3 S TENSOR REMARK 3 S11: 0.1492 S12: -0.6011 S13: 0.0272 REMARK 3 S21: 0.3790 S22: -0.2700 S23: 0.3516 REMARK 3 S31: -0.0497 S32: -0.3393 S33: 0.1143 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN C AND RESID 4:102 ) REMARK 3 ORIGIN FOR THE GROUP (A): 163.5662 54.7935 383.2795 REMARK 3 T TENSOR REMARK 3 T11: 0.4179 T22: 0.6941 REMARK 3 T33: 0.5340 T12: 0.1259 REMARK 3 T13: -0.0014 T23: -0.0708 REMARK 3 L TENSOR REMARK 3 L11: 3.4260 L22: 1.5217 REMARK 3 L33: 3.7415 L12: -0.9575 REMARK 3 L13: 0.4760 L23: -0.4109 REMARK 3 S TENSOR REMARK 3 S11: 0.2249 S12: 0.0905 S13: -0.4656 REMARK 3 S21: 0.3474 S22: -0.0076 S23: -0.1561 REMARK 3 S31: 0.2461 S32: 0.4589 S33: -0.1399 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN D AND RESID 4:101 ) REMARK 3 ORIGIN FOR THE GROUP (A): 146.0862 67.8988 354.8144 REMARK 3 T TENSOR REMARK 3 T11: 0.7640 T22: 0.6838 REMARK 3 T33: 0.5967 T12: 0.3197 REMARK 3 T13: -0.2051 T23: -0.1127 REMARK 3 L TENSOR REMARK 3 L11: 3.2515 L22: 2.8649 REMARK 3 L33: 4.9389 L12: 1.5593 REMARK 3 L13: -2.5298 L23: -0.3658 REMARK 3 S TENSOR REMARK 3 S11: -0.0081 S12: 0.0505 S13: 0.6960 REMARK 3 S21: -0.2067 S22: -0.0878 S23: 0.4211 REMARK 3 S31: -1.0457 S32: -0.5229 S33: 0.1109 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6JMI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-MAR-19. REMARK 100 THE DEPOSITION ID IS D_1300011204. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 4.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ELETTRA REMARK 200 BEAMLINE : 5.2R REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9686 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS DATA PROCESIING REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12678 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.896 REMARK 200 RESOLUTION RANGE LOW (A) : 45.580 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 13.30 REMARK 200 R MERGE (I) : 0.19200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 13.30 REMARK 200 R MERGE FOR SHELL (I) : 2.14100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M CH3COONA , (0.2-0.4) M NH4(SO4)2, REMARK 280 25% W/VPEG 4000, PH 4.6, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 131.30200 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 31.65850 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 31.65850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 65.65100 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 31.65850 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 31.65850 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 196.95300 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 31.65850 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 31.65850 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 65.65100 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 31.65850 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 31.65850 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 196.95300 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 131.30200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -54.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -50.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 1 REMARK 465 GLU A 2 REMARK 465 VAL A 103 REMARK 465 LEU A 104 REMARK 465 GLU A 105 REMARK 465 ASP A 106 REMARK 465 LEU A 107 REMARK 465 ARG A 108 REMARK 465 ALA A 109 REMARK 465 GLY A 110 REMARK 465 GLY A 111 REMARK 465 SER A 112 REMARK 465 ALA A 113 REMARK 465 THR A 114 REMARK 465 VAL B 1 REMARK 465 GLU B 2 REMARK 465 SER B 3 REMARK 465 SER B 42 REMARK 465 GLU B 47 REMARK 465 SER B 48 REMARK 465 VAL B 103 REMARK 465 LEU B 104 REMARK 465 GLU B 105 REMARK 465 ASP B 106 REMARK 465 LEU B 107 REMARK 465 ARG B 108 REMARK 465 ALA B 109 REMARK 465 GLY B 110 REMARK 465 GLY B 111 REMARK 465 SER B 112 REMARK 465 ALA B 113 REMARK 465 THR B 114 REMARK 465 VAL C 1 REMARK 465 GLU C 2 REMARK 465 GLY C 45 REMARK 465 LEU C 46 REMARK 465 GLU C 47 REMARK 465 SER C 48 REMARK 465 VAL C 103 REMARK 465 LEU C 104 REMARK 465 GLU C 105 REMARK 465 ASP C 106 REMARK 465 LEU C 107 REMARK 465 ARG C 108 REMARK 465 ALA C 109 REMARK 465 GLY C 110 REMARK 465 GLY C 111 REMARK 465 SER C 112 REMARK 465 ALA C 113 REMARK 465 THR C 114 REMARK 465 VAL D 1 REMARK 465 GLU D 2 REMARK 465 SER D 3 REMARK 465 LEU D 40 REMARK 465 SER D 41 REMARK 465 SER D 42 REMARK 465 GLU D 47 REMARK 465 SER D 48 REMARK 465 SER D 49 REMARK 465 ALA D 66 REMARK 465 ARG D 67 REMARK 465 ARG D 68 REMARK 465 ASP D 69 REMARK 465 GLY D 70 REMARK 465 ASN D 71 REMARK 465 ALA D 72 REMARK 465 MET D 73 REMARK 465 ILE D 74 REMARK 465 ALA D 102 REMARK 465 VAL D 103 REMARK 465 LEU D 104 REMARK 465 GLU D 105 REMARK 465 ASP D 106 REMARK 465 LEU D 107 REMARK 465 ARG D 108 REMARK 465 ALA D 109 REMARK 465 GLY D 110 REMARK 465 GLY D 111 REMARK 465 SER D 112 REMARK 465 ALA D 113 REMARK 465 THR D 114 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 8 CG CD CE NZ REMARK 470 GLU A 12 CG CD OE1 OE2 REMARK 470 LYS A 15 CE NZ REMARK 470 ARG A 32 CG CD NE CZ NH1 NH2 REMARK 470 SER A 42 OG REMARK 470 GLU A 47 CG CD OE1 OE2 REMARK 470 ARG A 68 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 69 CG OD1 OD2 REMARK 470 ASN A 71 CG OD1 ND2 REMARK 470 SER A 76 OG REMARK 470 ARG A 100 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 4 CG CD OE1 OE2 REMARK 470 LYS B 8 CG CD CE NZ REMARK 470 GLN B 53 CG CD OE1 NE2 REMARK 470 LYS B 91 CG CD CE NZ REMARK 470 LYS C 8 CG CD CE NZ REMARK 470 GLU C 31 CG CD OE1 OE2 REMARK 470 SER C 42 OG REMARK 470 SER C 52 OG REMARK 470 GLN C 53 CG CD OE1 NE2 REMARK 470 ARG C 67 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 68 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 90 CG CD NE CZ NH1 NH2 REMARK 470 SER C 98 OG REMARK 470 LYS D 8 CG CD CE NZ REMARK 470 GLU D 31 CG CD OE1 OE2 REMARK 470 ARG D 32 CG CD NE CZ NH1 NH2 REMARK 470 ASP D 33 CG OD1 OD2 REMARK 470 SER D 35 OG REMARK 470 LEU D 39 CG CD1 CD2 REMARK 470 SER D 52 OG REMARK 470 GLN D 53 CG CD OE1 NE2 REMARK 470 ARG D 59 CG CD NE CZ NH1 NH2 REMARK 470 ASP D 99 CG OD1 OD2 REMARK 470 ARG D 100 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 41 47.34 -106.96 REMARK 500 ALA A 79 148.76 68.47 REMARK 500 ALA B 79 149.68 69.14 REMARK 500 SER C 42 -146.39 -124.68 REMARK 500 ALA C 79 148.10 67.62 REMARK 500 ALA D 18 58.75 -92.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 D 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5XPQ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF M.TUBERCULOSIS RV0081 DBREF 6JMI A 2 114 UNP P9WMI7 Y0081_MYCTU 2 114 DBREF 6JMI B 2 114 UNP P9WMI7 Y0081_MYCTU 2 114 DBREF 6JMI C 2 114 UNP P9WMI7 Y0081_MYCTU 2 114 DBREF 6JMI D 2 114 UNP P9WMI7 Y0081_MYCTU 2 114 SEQADV 6JMI VAL A 1 UNP P9WMI7 EXPRESSION TAG SEQADV 6JMI VAL B 1 UNP P9WMI7 EXPRESSION TAG SEQADV 6JMI VAL C 1 UNP P9WMI7 EXPRESSION TAG SEQADV 6JMI VAL D 1 UNP P9WMI7 EXPRESSION TAG SEQRES 1 A 114 VAL GLU SER GLU PRO LEU TYR LYS LEU LYS ALA GLU PHE SEQRES 2 A 114 PHE LYS THR LEU ALA HIS PRO ALA ARG ILE ARG ILE LEU SEQRES 3 A 114 GLU LEU LEU VAL GLU ARG ASP ARG SER VAL GLY GLU LEU SEQRES 4 A 114 LEU SER SER ASP VAL GLY LEU GLU SER SER ASN LEU SER SEQRES 5 A 114 GLN GLN LEU GLY VAL LEU ARG ARG ALA GLY VAL VAL ALA SEQRES 6 A 114 ALA ARG ARG ASP GLY ASN ALA MET ILE TYR SER ILE ALA SEQRES 7 A 114 ALA PRO ASP ILE ALA GLU LEU LEU ALA VAL ALA ARG LYS SEQRES 8 A 114 VAL LEU ALA ARG VAL LEU SER ASP ARG VAL ALA VAL LEU SEQRES 9 A 114 GLU ASP LEU ARG ALA GLY GLY SER ALA THR SEQRES 1 B 114 VAL GLU SER GLU PRO LEU TYR LYS LEU LYS ALA GLU PHE SEQRES 2 B 114 PHE LYS THR LEU ALA HIS PRO ALA ARG ILE ARG ILE LEU SEQRES 3 B 114 GLU LEU LEU VAL GLU ARG ASP ARG SER VAL GLY GLU LEU SEQRES 4 B 114 LEU SER SER ASP VAL GLY LEU GLU SER SER ASN LEU SER SEQRES 5 B 114 GLN GLN LEU GLY VAL LEU ARG ARG ALA GLY VAL VAL ALA SEQRES 6 B 114 ALA ARG ARG ASP GLY ASN ALA MET ILE TYR SER ILE ALA SEQRES 7 B 114 ALA PRO ASP ILE ALA GLU LEU LEU ALA VAL ALA ARG LYS SEQRES 8 B 114 VAL LEU ALA ARG VAL LEU SER ASP ARG VAL ALA VAL LEU SEQRES 9 B 114 GLU ASP LEU ARG ALA GLY GLY SER ALA THR SEQRES 1 C 114 VAL GLU SER GLU PRO LEU TYR LYS LEU LYS ALA GLU PHE SEQRES 2 C 114 PHE LYS THR LEU ALA HIS PRO ALA ARG ILE ARG ILE LEU SEQRES 3 C 114 GLU LEU LEU VAL GLU ARG ASP ARG SER VAL GLY GLU LEU SEQRES 4 C 114 LEU SER SER ASP VAL GLY LEU GLU SER SER ASN LEU SER SEQRES 5 C 114 GLN GLN LEU GLY VAL LEU ARG ARG ALA GLY VAL VAL ALA SEQRES 6 C 114 ALA ARG ARG ASP GLY ASN ALA MET ILE TYR SER ILE ALA SEQRES 7 C 114 ALA PRO ASP ILE ALA GLU LEU LEU ALA VAL ALA ARG LYS SEQRES 8 C 114 VAL LEU ALA ARG VAL LEU SER ASP ARG VAL ALA VAL LEU SEQRES 9 C 114 GLU ASP LEU ARG ALA GLY GLY SER ALA THR SEQRES 1 D 114 VAL GLU SER GLU PRO LEU TYR LYS LEU LYS ALA GLU PHE SEQRES 2 D 114 PHE LYS THR LEU ALA HIS PRO ALA ARG ILE ARG ILE LEU SEQRES 3 D 114 GLU LEU LEU VAL GLU ARG ASP ARG SER VAL GLY GLU LEU SEQRES 4 D 114 LEU SER SER ASP VAL GLY LEU GLU SER SER ASN LEU SER SEQRES 5 D 114 GLN GLN LEU GLY VAL LEU ARG ARG ALA GLY VAL VAL ALA SEQRES 6 D 114 ALA ARG ARG ASP GLY ASN ALA MET ILE TYR SER ILE ALA SEQRES 7 D 114 ALA PRO ASP ILE ALA GLU LEU LEU ALA VAL ALA ARG LYS SEQRES 8 D 114 VAL LEU ALA ARG VAL LEU SER ASP ARG VAL ALA VAL LEU SEQRES 9 D 114 GLU ASP LEU ARG ALA GLY GLY SER ALA THR HET SO4 A 201 5 HET SO4 B 201 5 HET SO4 C 201 5 HET SO4 D 201 5 HETNAM SO4 SULFATE ION FORMUL 5 SO4 4(O4 S 2-) HELIX 1 AA1 GLU A 4 LEU A 17 1 14 HELIX 2 AA2 HIS A 19 ARG A 32 1 14 HELIX 3 AA3 VAL A 36 SER A 41 1 6 HELIX 4 AA4 GLU A 47 ALA A 61 1 15 HELIX 5 AA5 PRO A 80 ALA A 102 1 23 HELIX 6 AA6 PRO B 5 LEU B 17 1 13 HELIX 7 AA7 HIS B 19 ARG B 32 1 14 HELIX 8 AA8 VAL B 36 SER B 41 1 6 HELIX 9 AA9 ASN B 50 ALA B 61 1 12 HELIX 10 AB1 PRO B 80 ALA B 102 1 23 HELIX 11 AB2 GLU C 4 LEU C 17 1 14 HELIX 12 AB3 HIS C 19 ARG C 32 1 14 HELIX 13 AB4 VAL C 36 SER C 41 1 6 HELIX 14 AB5 ASN C 50 ALA C 61 1 12 HELIX 15 AB6 PRO C 80 ALA C 102 1 23 HELIX 16 AB7 PRO D 5 LEU D 17 1 13 HELIX 17 AB8 HIS D 19 ARG D 32 1 14 HELIX 18 AB9 LEU D 51 ALA D 61 1 11 HELIX 19 AC1 PRO D 80 VAL D 101 1 22 SHEET 1 AA1 3 ARG A 34 SER A 35 0 SHEET 2 AA1 3 MET A 73 ILE A 77 -1 O TYR A 75 N ARG A 34 SHEET 3 AA1 3 VAL A 64 ARG A 68 -1 N ALA A 65 O SER A 76 SHEET 1 AA2 3 ARG B 34 SER B 35 0 SHEET 2 AA2 3 MET B 73 ILE B 77 -1 O TYR B 75 N ARG B 34 SHEET 3 AA2 3 VAL B 64 ARG B 68 -1 N ALA B 65 O SER B 76 SHEET 1 AA3 3 ARG C 34 SER C 35 0 SHEET 2 AA3 3 MET C 73 ILE C 77 -1 O TYR C 75 N ARG C 34 SHEET 3 AA3 3 VAL C 64 ARG C 68 -1 N ALA C 65 O SER C 76 SITE 1 AC1 4 LYS A 15 THR A 16 HIS A 19 ARG A 22 SITE 1 AC2 3 LYS B 15 HIS B 19 ARG B 22 SITE 1 AC3 3 LYS C 15 HIS C 19 ARG C 22 SITE 1 AC4 3 LYS D 15 HIS D 19 ARG D 22 CRYST1 63.317 63.317 262.604 90.00 90.00 90.00 P 41 21 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015794 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015794 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003808 0.00000