HEADER HYDROLASE 13-MAR-19 6JN5 TITLE SERINE BETA-LACTAMASE KPC-2 IN COMPLEX WITH DUAL MBL/SBL INHIBITOR TITLE 2 MS23 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE BETA-LACTAMASE KPC-2; COMPND 3 CHAIN: A, B, C, D; COMPND 4 EC: 3.5.2.6; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 573; SOURCE 4 GENE: KPC-2; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS BETA-LACTAMASE, SERINE-BETA-LACTAMASE KPC-2, KPC-2, CARBAPENEMASE, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR G.-B.LI,S.LIU REVDAT 3 22-NOV-23 6JN5 1 REMARK REVDAT 2 21-AUG-19 6JN5 1 JRNL REVDAT 1 17-JUL-19 6JN5 0 JRNL AUTH Y.L.WANG,S.LIU,Z.J.YU,Y.LEI,M.Y.HUANG,Y.H.YAN,Q.MA,Y.ZHENG, JRNL AUTH 2 H.DENG,Y.SUN,C.WU,Y.YU,Q.CHEN,Z.WANG,Y.WU,G.B.LI JRNL TITL STRUCTURE-BASED DEVELOPMENT OF JRNL TITL 2 (1-(3'-MERCAPTOPROPANAMIDO)METHYL)BORONIC ACID DERIVED JRNL TITL 3 BROAD-SPECTRUM, DUAL-ACTION INHIBITORS OF METALLO- AND JRNL TITL 4 SERINE-BETA-LACTAMASES. JRNL REF J.MED.CHEM. V. 62 7160 2019 JRNL REFN ISSN 0022-2623 JRNL PMID 31269398 JRNL DOI 10.1021/ACS.JMEDCHEM.9B00735 REMARK 2 REMARK 2 RESOLUTION. 1.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.56 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 102537 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.275 REMARK 3 R VALUE (WORKING SET) : 0.275 REMARK 3 FREE R VALUE : 0.316 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.640 REMARK 3 FREE R VALUE TEST SET COUNT : 1681 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.5751 - 4.5091 0.98 8644 147 0.2725 0.2763 REMARK 3 2 4.5091 - 3.5794 0.99 8556 146 0.2533 0.2706 REMARK 3 3 3.5794 - 3.1270 0.99 8535 141 0.2656 0.2992 REMARK 3 4 3.1270 - 2.8411 1.00 8504 144 0.2791 0.2978 REMARK 3 5 2.8411 - 2.6375 0.99 8478 139 0.2743 0.3114 REMARK 3 6 2.6375 - 2.4820 0.99 8458 141 0.2710 0.3151 REMARK 3 7 2.4820 - 2.3577 1.00 8467 140 0.2779 0.3687 REMARK 3 8 2.3577 - 2.2551 1.00 8457 139 0.2820 0.3585 REMARK 3 9 2.2551 - 2.1683 0.99 8435 139 0.2902 0.4014 REMARK 3 10 2.1683 - 2.0935 0.99 8423 143 0.2975 0.3792 REMARK 3 11 2.0935 - 2.0280 0.98 8309 136 0.2944 0.3584 REMARK 3 12 2.0280 - 1.9700 0.90 7590 126 0.2889 0.3502 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.110 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 8055 REMARK 3 ANGLE : 1.326 10974 REMARK 3 CHIRALITY : 0.066 1244 REMARK 3 PLANARITY : 0.009 1431 REMARK 3 DIHEDRAL : 16.566 4756 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6JN5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-MAR-19. REMARK 100 THE DEPOSITION ID IS D_1300011361. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-APR-18 REMARK 200 TEMPERATURE (KELVIN) : 195 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 X CDTE 1M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 158548 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 17.00 REMARK 200 R MERGE (I) : 0.35500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 2.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.8 REMARK 200 DATA REDUNDANCY IN SHELL : 8.30 REMARK 200 R MERGE FOR SHELL (I) : 0.84600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.6.0 REMARK 200 STARTING MODEL: 5EEC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M LITHIUM SULPHATE, 0.05M SODIUM REMARK 280 ACETATE (PH 4.5), 32-35% (V/V) POLYETHYLENE GLYCOL 8000, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR B 26 REMARK 465 ASN B 27 REMARK 465 LEU B 28 REMARK 465 THR D 26 REMARK 465 ASN D 27 REMARK 465 LEU D 28 REMARK 465 VAL D 29 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLY A 291 CA C O REMARK 470 GLY B 291 CA C O REMARK 470 GLY C 291 CA C O REMARK 470 GLY D 291 CA C O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER D 70 O11 BXU D 301 1.55 REMARK 500 OG SER C 70 B9 BXU C 301 1.73 REMARK 500 OG SER D 70 B9 BXU D 301 1.82 REMARK 500 O HOH B 468 O HOH B 470 1.84 REMARK 500 OE2 GLU D 31 O HOH D 401 1.93 REMARK 500 OG SER B 70 B9 BXU B 301 1.99 REMARK 500 NH2 ARG B 83 O GLU B 141 2.02 REMARK 500 NZ LYS D 73 O11 BXU D 301 2.04 REMARK 500 O HOH A 459 O HOH D 422 2.04 REMARK 500 OH TYR C 241 OE1 GLU D 31 2.05 REMARK 500 OG SER C 70 O10 BXU C 301 2.05 REMARK 500 O HOH D 419 O HOH D 422 2.06 REMARK 500 O HOH B 452 O HOH B 458 2.07 REMARK 500 N THR A 26 O HOH A 401 2.09 REMARK 500 O THR A 194 O HOH A 402 2.10 REMARK 500 OG SER A 109 OD2 ASP A 131 2.14 REMARK 500 OG SER B 109 OD2 ASP B 131 2.15 REMARK 500 OG SER A 70 B9 BXU A 301 2.16 REMARK 500 OG1 THR A 51 O PRO A 258 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 446 O HOH B 467 2565 2.04 REMARK 500 O LEU C 195 NH2 ARG D 96 6557 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 37 CB GLU B 37 CG -0.118 REMARK 500 TRP B 251 CB TRP B 251 CG -0.109 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 204 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG B 204 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG C 204 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 69 -140.17 47.79 REMARK 500 SER A 84 -17.77 -49.34 REMARK 500 ARG A 96 78.26 -101.76 REMARK 500 ARG A 220 -110.20 -105.36 REMARK 500 ALA A 227 14.64 -67.58 REMARK 500 ASP A 246 139.81 -178.66 REMARK 500 CYS B 69 -136.47 47.32 REMARK 500 ARG B 220 -126.86 -120.32 REMARK 500 PRO B 226 133.64 -36.56 REMARK 500 CYS C 69 -142.27 47.41 REMARK 500 ARG C 96 55.82 -98.54 REMARK 500 ARG C 220 -124.17 -113.10 REMARK 500 THR C 254 142.29 -20.53 REMARK 500 CYS D 69 -145.92 41.40 REMARK 500 ARG D 220 -124.64 -123.79 REMARK 500 ASP D 246 137.91 -170.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C 439 DISTANCE = 6.17 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BXU A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BXU B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BXU C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BXU D 301 DBREF 6JN5 A 26 291 UNP Q93LQ9 Q93LQ9_KLEPN 26 289 DBREF 6JN5 B 26 291 UNP Q93LQ9 Q93LQ9_KLEPN 26 289 DBREF 6JN5 C 26 291 UNP Q93LQ9 Q93LQ9_KLEPN 26 289 DBREF 6JN5 D 26 291 UNP Q93LQ9 Q93LQ9_KLEPN 26 289 SEQRES 1 A 264 THR ASN LEU VAL ALA GLU PRO PHE ALA LYS LEU GLU GLN SEQRES 2 A 264 ASP PHE GLY GLY SER ILE GLY VAL TYR ALA MET ASP THR SEQRES 3 A 264 GLY SER GLY ALA THR VAL SER TYR ARG ALA GLU GLU ARG SEQRES 4 A 264 PHE PRO LEU CYS SER SER PHE LYS GLY PHE LEU ALA ALA SEQRES 5 A 264 ALA VAL LEU ALA ARG SER GLN GLN GLN ALA GLY LEU LEU SEQRES 6 A 264 ASP THR PRO ILE ARG TYR GLY LYS ASN ALA LEU VAL PRO SEQRES 7 A 264 TRP SER PRO ILE SER GLU LYS TYR LEU THR THR GLY MET SEQRES 8 A 264 THR VAL ALA GLU LEU SER ALA ALA ALA VAL GLN TYR SER SEQRES 9 A 264 ASP ASN ALA ALA ALA ASN LEU LEU LEU LYS GLU LEU GLY SEQRES 10 A 264 GLY PRO ALA GLY LEU THR ALA PHE MET ARG SER ILE GLY SEQRES 11 A 264 ASP THR THR PHE ARG LEU ASP ARG TRP GLU LEU GLU LEU SEQRES 12 A 264 ASN SER ALA ILE PRO GLY ASP ALA ARG ASP THR SER SER SEQRES 13 A 264 PRO ARG ALA VAL THR GLU SER LEU GLN LYS LEU THR LEU SEQRES 14 A 264 GLY SER ALA LEU ALA ALA PRO GLN ARG GLN GLN PHE VAL SEQRES 15 A 264 ASP TRP LEU LYS GLY ASN THR THR GLY ASN HIS ARG ILE SEQRES 16 A 264 ARG ALA ALA VAL PRO ALA ASP TRP ALA VAL GLY ASP LYS SEQRES 17 A 264 THR GLY THR CYS GLY VAL TYR GLY THR ALA ASN ASP TYR SEQRES 18 A 264 ALA VAL VAL TRP PRO THR GLY ARG ALA PRO ILE VAL LEU SEQRES 19 A 264 ALA VAL TYR THR ARG ALA PRO ASN LYS ASP ASP LYS HIS SEQRES 20 A 264 SER GLU ALA VAL ILE ALA ALA ALA ALA ARG LEU ALA LEU SEQRES 21 A 264 GLU GLY LEU GLY SEQRES 1 B 264 THR ASN LEU VAL ALA GLU PRO PHE ALA LYS LEU GLU GLN SEQRES 2 B 264 ASP PHE GLY GLY SER ILE GLY VAL TYR ALA MET ASP THR SEQRES 3 B 264 GLY SER GLY ALA THR VAL SER TYR ARG ALA GLU GLU ARG SEQRES 4 B 264 PHE PRO LEU CYS SER SER PHE LYS GLY PHE LEU ALA ALA SEQRES 5 B 264 ALA VAL LEU ALA ARG SER GLN GLN GLN ALA GLY LEU LEU SEQRES 6 B 264 ASP THR PRO ILE ARG TYR GLY LYS ASN ALA LEU VAL PRO SEQRES 7 B 264 TRP SER PRO ILE SER GLU LYS TYR LEU THR THR GLY MET SEQRES 8 B 264 THR VAL ALA GLU LEU SER ALA ALA ALA VAL GLN TYR SER SEQRES 9 B 264 ASP ASN ALA ALA ALA ASN LEU LEU LEU LYS GLU LEU GLY SEQRES 10 B 264 GLY PRO ALA GLY LEU THR ALA PHE MET ARG SER ILE GLY SEQRES 11 B 264 ASP THR THR PHE ARG LEU ASP ARG TRP GLU LEU GLU LEU SEQRES 12 B 264 ASN SER ALA ILE PRO GLY ASP ALA ARG ASP THR SER SER SEQRES 13 B 264 PRO ARG ALA VAL THR GLU SER LEU GLN LYS LEU THR LEU SEQRES 14 B 264 GLY SER ALA LEU ALA ALA PRO GLN ARG GLN GLN PHE VAL SEQRES 15 B 264 ASP TRP LEU LYS GLY ASN THR THR GLY ASN HIS ARG ILE SEQRES 16 B 264 ARG ALA ALA VAL PRO ALA ASP TRP ALA VAL GLY ASP LYS SEQRES 17 B 264 THR GLY THR CYS GLY VAL TYR GLY THR ALA ASN ASP TYR SEQRES 18 B 264 ALA VAL VAL TRP PRO THR GLY ARG ALA PRO ILE VAL LEU SEQRES 19 B 264 ALA VAL TYR THR ARG ALA PRO ASN LYS ASP ASP LYS HIS SEQRES 20 B 264 SER GLU ALA VAL ILE ALA ALA ALA ALA ARG LEU ALA LEU SEQRES 21 B 264 GLU GLY LEU GLY SEQRES 1 C 264 THR ASN LEU VAL ALA GLU PRO PHE ALA LYS LEU GLU GLN SEQRES 2 C 264 ASP PHE GLY GLY SER ILE GLY VAL TYR ALA MET ASP THR SEQRES 3 C 264 GLY SER GLY ALA THR VAL SER TYR ARG ALA GLU GLU ARG SEQRES 4 C 264 PHE PRO LEU CYS SER SER PHE LYS GLY PHE LEU ALA ALA SEQRES 5 C 264 ALA VAL LEU ALA ARG SER GLN GLN GLN ALA GLY LEU LEU SEQRES 6 C 264 ASP THR PRO ILE ARG TYR GLY LYS ASN ALA LEU VAL PRO SEQRES 7 C 264 TRP SER PRO ILE SER GLU LYS TYR LEU THR THR GLY MET SEQRES 8 C 264 THR VAL ALA GLU LEU SER ALA ALA ALA VAL GLN TYR SER SEQRES 9 C 264 ASP ASN ALA ALA ALA ASN LEU LEU LEU LYS GLU LEU GLY SEQRES 10 C 264 GLY PRO ALA GLY LEU THR ALA PHE MET ARG SER ILE GLY SEQRES 11 C 264 ASP THR THR PHE ARG LEU ASP ARG TRP GLU LEU GLU LEU SEQRES 12 C 264 ASN SER ALA ILE PRO GLY ASP ALA ARG ASP THR SER SER SEQRES 13 C 264 PRO ARG ALA VAL THR GLU SER LEU GLN LYS LEU THR LEU SEQRES 14 C 264 GLY SER ALA LEU ALA ALA PRO GLN ARG GLN GLN PHE VAL SEQRES 15 C 264 ASP TRP LEU LYS GLY ASN THR THR GLY ASN HIS ARG ILE SEQRES 16 C 264 ARG ALA ALA VAL PRO ALA ASP TRP ALA VAL GLY ASP LYS SEQRES 17 C 264 THR GLY THR CYS GLY VAL TYR GLY THR ALA ASN ASP TYR SEQRES 18 C 264 ALA VAL VAL TRP PRO THR GLY ARG ALA PRO ILE VAL LEU SEQRES 19 C 264 ALA VAL TYR THR ARG ALA PRO ASN LYS ASP ASP LYS HIS SEQRES 20 C 264 SER GLU ALA VAL ILE ALA ALA ALA ALA ARG LEU ALA LEU SEQRES 21 C 264 GLU GLY LEU GLY SEQRES 1 D 264 THR ASN LEU VAL ALA GLU PRO PHE ALA LYS LEU GLU GLN SEQRES 2 D 264 ASP PHE GLY GLY SER ILE GLY VAL TYR ALA MET ASP THR SEQRES 3 D 264 GLY SER GLY ALA THR VAL SER TYR ARG ALA GLU GLU ARG SEQRES 4 D 264 PHE PRO LEU CYS SER SER PHE LYS GLY PHE LEU ALA ALA SEQRES 5 D 264 ALA VAL LEU ALA ARG SER GLN GLN GLN ALA GLY LEU LEU SEQRES 6 D 264 ASP THR PRO ILE ARG TYR GLY LYS ASN ALA LEU VAL PRO SEQRES 7 D 264 TRP SER PRO ILE SER GLU LYS TYR LEU THR THR GLY MET SEQRES 8 D 264 THR VAL ALA GLU LEU SER ALA ALA ALA VAL GLN TYR SER SEQRES 9 D 264 ASP ASN ALA ALA ALA ASN LEU LEU LEU LYS GLU LEU GLY SEQRES 10 D 264 GLY PRO ALA GLY LEU THR ALA PHE MET ARG SER ILE GLY SEQRES 11 D 264 ASP THR THR PHE ARG LEU ASP ARG TRP GLU LEU GLU LEU SEQRES 12 D 264 ASN SER ALA ILE PRO GLY ASP ALA ARG ASP THR SER SER SEQRES 13 D 264 PRO ARG ALA VAL THR GLU SER LEU GLN LYS LEU THR LEU SEQRES 14 D 264 GLY SER ALA LEU ALA ALA PRO GLN ARG GLN GLN PHE VAL SEQRES 15 D 264 ASP TRP LEU LYS GLY ASN THR THR GLY ASN HIS ARG ILE SEQRES 16 D 264 ARG ALA ALA VAL PRO ALA ASP TRP ALA VAL GLY ASP LYS SEQRES 17 D 264 THR GLY THR CYS GLY VAL TYR GLY THR ALA ASN ASP TYR SEQRES 18 D 264 ALA VAL VAL TRP PRO THR GLY ARG ALA PRO ILE VAL LEU SEQRES 19 D 264 ALA VAL TYR THR ARG ALA PRO ASN LYS ASP ASP LYS HIS SEQRES 20 D 264 SER GLU ALA VAL ILE ALA ALA ALA ALA ARG LEU ALA LEU SEQRES 21 D 264 GLU GLY LEU GLY HET BXU A 301 18 HET BXU B 301 18 HET BXU C 301 18 HET BXU D 301 18 HETNAM BXU [(S)-(4-FLUOROPHENYL)-[[(2S)-2-METHYL-3-SULFANYL- HETNAM 2 BXU PROPANOYL]AMINO]METHYL]BORONIC ACID FORMUL 5 BXU 4(C11 H15 B F N O3 S) FORMUL 9 HOH *210(H2 O) HELIX 1 AA1 ALA A 30 GLY A 41 1 12 HELIX 2 AA2 SER A 71 SER A 84 1 14 HELIX 3 AA3 GLY A 98 LEU A 102 5 5 HELIX 4 AA4 SER A 106 TYR A 112 1 7 HELIX 5 AA5 LEU A 113 GLY A 116 5 4 HELIX 6 AA6 VAL A 119 SER A 130 1 12 HELIX 7 AA7 ASP A 131 LEU A 142 1 12 HELIX 8 AA8 GLY A 143 ILE A 155 1 13 HELIX 9 AA9 LEU A 167 SER A 171 5 5 HELIX 10 AB1 SER A 182 GLY A 196 1 15 HELIX 11 AB2 ALA A 200 GLY A 213 1 14 HELIX 12 AB3 ARG A 220 VAL A 225 1 6 HELIX 13 AB4 SER A 275 LEU A 290 1 16 HELIX 14 AB5 ALA B 30 GLY B 41 1 12 HELIX 15 AB6 SER B 71 GLN B 85 1 15 HELIX 16 AB7 GLY B 89 ASP B 92 5 4 HELIX 17 AB8 GLY B 98 LEU B 102 5 5 HELIX 18 AB9 SER B 106 TYR B 112 1 7 HELIX 19 AC1 VAL B 119 SER B 130 1 12 HELIX 20 AC2 ASP B 131 GLY B 143 1 13 HELIX 21 AC3 GLY B 144 ILE B 155 1 12 HELIX 22 AC4 LEU B 167 SER B 171 5 5 HELIX 23 AC5 SER B 182 LEU B 195 1 14 HELIX 24 AC6 ALA B 200 GLY B 213 1 14 HELIX 25 AC7 ARG B 220 VAL B 225 5 6 HELIX 26 AC8 SER B 275 GLY B 289 1 15 HELIX 27 AC9 ALA C 30 GLY C 41 1 12 HELIX 28 AD1 SER C 71 SER C 84 1 14 HELIX 29 AD2 GLY C 89 ASP C 92 5 4 HELIX 30 AD3 GLY C 98 LEU C 102 5 5 HELIX 31 AD4 SER C 106 TYR C 112 1 7 HELIX 32 AD5 VAL C 119 SER C 130 1 12 HELIX 33 AD6 ASP C 131 GLY C 143 1 13 HELIX 34 AD7 GLY C 143 ILE C 155 1 13 HELIX 35 AD8 LEU C 167 SER C 171 5 5 HELIX 36 AD9 SER C 182 LEU C 195 1 14 HELIX 37 AE1 ALA C 200 GLY C 213 1 14 HELIX 38 AE2 ILE C 221 VAL C 225 5 5 HELIX 39 AE3 SER C 275 GLY C 289 1 15 HELIX 40 AE4 GLU D 31 GLY D 41 1 11 HELIX 41 AE5 SER D 71 GLN D 87 1 17 HELIX 42 AE6 GLY D 98 LEU D 102 5 5 HELIX 43 AE7 SER D 106 TYR D 112 1 7 HELIX 44 AE8 VAL D 119 SER D 130 1 12 HELIX 45 AE9 ASP D 131 GLY D 143 1 13 HELIX 46 AF1 GLY D 143 SER D 154 1 12 HELIX 47 AF2 LEU D 167 SER D 171 5 5 HELIX 48 AF3 SER D 182 LEU D 195 1 14 HELIX 49 AF4 ALA D 200 GLY D 213 1 14 HELIX 50 AF5 ARG D 220 VAL D 225 5 6 HELIX 51 AF6 SER D 275 LEU D 290 1 16 SHEET 1 AA1 5 THR A 56 TYR A 60 0 SHEET 2 AA1 5 SER A 43 ASP A 50 -1 N VAL A 46 O TYR A 60 SHEET 3 AA1 5 ILE A 259 ARG A 266 -1 O ARG A 266 N SER A 43 SHEET 4 AA1 5 ALA A 244 TRP A 251 -1 N VAL A 250 O ILE A 259 SHEET 5 AA1 5 ALA A 230 THR A 237 -1 N GLY A 236 O ASN A 245 SHEET 1 AA2 2 PHE A 66 PRO A 67 0 SHEET 2 AA2 2 THR A 180 SER A 181 -1 O SER A 181 N PHE A 66 SHEET 1 AA3 2 PRO A 94 ILE A 95 0 SHEET 2 AA3 2 MET A 117 THR A 118 -1 O MET A 117 N ILE A 95 SHEET 1 AA4 5 THR B 56 TYR B 60 0 SHEET 2 AA4 5 SER B 43 ASP B 50 -1 N VAL B 46 O TYR B 60 SHEET 3 AA4 5 ILE B 259 ARG B 266 -1 O TYR B 264 N GLY B 45 SHEET 4 AA4 5 ALA B 244 TRP B 251 -1 N VAL B 250 O ILE B 259 SHEET 5 AA4 5 ALA B 230 THR B 237 -1 N GLY B 236 O ASN B 245 SHEET 1 AA5 2 PHE B 66 PRO B 67 0 SHEET 2 AA5 2 THR B 180 SER B 181 -1 O SER B 181 N PHE B 66 SHEET 1 AA6 2 PRO B 94 ILE B 95 0 SHEET 2 AA6 2 MET B 117 THR B 118 -1 O MET B 117 N ILE B 95 SHEET 1 AA7 5 THR C 56 TYR C 60 0 SHEET 2 AA7 5 SER C 43 ASP C 50 -1 N VAL C 46 O TYR C 60 SHEET 3 AA7 5 ILE C 259 ARG C 266 -1 O TYR C 264 N GLY C 45 SHEET 4 AA7 5 ALA C 244 TRP C 251 -1 N VAL C 250 O ILE C 259 SHEET 5 AA7 5 ALA C 230 THR C 237 -1 N ALA C 230 O TRP C 251 SHEET 1 AA8 2 PHE C 66 PRO C 67 0 SHEET 2 AA8 2 THR C 180 SER C 181 -1 O SER C 181 N PHE C 66 SHEET 1 AA9 2 PRO C 94 ILE C 95 0 SHEET 2 AA9 2 MET C 117 THR C 118 -1 O MET C 117 N ILE C 95 SHEET 1 AB1 5 THR D 56 TYR D 60 0 SHEET 2 AB1 5 SER D 43 ASP D 50 -1 N VAL D 46 O TYR D 60 SHEET 3 AB1 5 ILE D 259 ARG D 266 -1 O TYR D 264 N GLY D 45 SHEET 4 AB1 5 ALA D 244 TRP D 251 -1 N ALA D 248 O LEU D 261 SHEET 5 AB1 5 ALA D 230 THR D 237 -1 N GLY D 236 O ASN D 245 SHEET 1 AB2 2 PHE D 66 PRO D 67 0 SHEET 2 AB2 2 THR D 180 SER D 181 -1 O SER D 181 N PHE D 66 SHEET 1 AB3 2 PRO D 94 ILE D 95 0 SHEET 2 AB3 2 MET D 117 THR D 118 -1 O MET D 117 N ILE D 95 SSBOND 1 CYS A 69 CYS A 238 1555 1555 2.02 SSBOND 2 CYS B 69 CYS B 238 1555 1555 2.07 SSBOND 3 CYS C 69 CYS C 238 1555 1555 2.04 SSBOND 4 CYS D 69 CYS D 238 1555 1555 2.06 CISPEP 1 GLU A 166 LEU A 167 0 -5.98 CISPEP 2 GLU B 166 LEU B 167 0 -3.18 CISPEP 3 GLU C 166 LEU C 167 0 0.71 CISPEP 4 GLU D 166 LEU D 167 0 -1.48 SITE 1 AC1 10 CYS A 69 SER A 70 TRP A 105 SER A 130 SITE 2 AC1 10 GLU A 166 LEU A 167 ASN A 170 THR A 237 SITE 3 AC1 10 CYS A 238 HOH A 470 SITE 1 AC2 10 CYS B 69 SER B 70 SER B 130 ASN B 132 SITE 2 AC2 10 GLU B 166 LEU B 167 ASN B 170 THR B 237 SITE 3 AC2 10 CYS B 238 HOH B 474 SITE 1 AC3 10 CYS C 69 SER C 70 TRP C 105 SER C 130 SITE 2 AC3 10 ASN C 132 GLU C 166 LEU C 167 ASN C 170 SITE 3 AC3 10 THR C 237 HOH C 437 SITE 1 AC4 11 SER D 70 LYS D 73 TRP D 105 TYR D 129 SITE 2 AC4 11 SER D 130 ASN D 132 GLU D 166 LEU D 167 SITE 3 AC4 11 ASN D 170 THR D 237 CYS D 238 CRYST1 164.757 164.757 94.499 90.00 90.00 120.00 P 3 2 1 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006070 0.003504 0.000000 0.00000 SCALE2 0.000000 0.007009 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010582 0.00000