data_6JNL # _entry.id 6JNL # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6JNL pdb_00006jnl 10.2210/pdb6jnl/pdb WWPDB D_1300011431 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-03-27 2 'Structure model' 1 1 2019-05-15 3 'Structure model' 1 2 2023-11-22 4 'Structure model' 2 0 2024-05-29 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 3 'Structure model' 'Derived calculations' 6 3 'Structure model' 'Refinement description' 7 4 'Structure model' Advisory 8 4 'Structure model' 'Atomic model' 9 4 'Structure model' 'Data collection' 10 4 'Structure model' 'Derived calculations' 11 4 'Structure model' 'Non-polymer description' 12 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' chem_comp_atom 4 3 'Structure model' chem_comp_bond 5 3 'Structure model' database_2 6 3 'Structure model' pdbx_initial_refinement_model 7 3 'Structure model' pdbx_struct_conn_angle 8 3 'Structure model' struct_conn 9 4 'Structure model' atom_site 10 4 'Structure model' chem_comp 11 4 'Structure model' chem_comp_atom 12 4 'Structure model' chem_comp_bond 13 4 'Structure model' pdbx_entity_nonpoly 14 4 'Structure model' pdbx_nonpoly_scheme 15 4 'Structure model' pdbx_unobs_or_zero_occ_atoms 16 4 'Structure model' pdbx_validate_close_contact 17 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.journal_id_ISSN' 5 2 'Structure model' '_citation.journal_volume' 6 2 'Structure model' '_citation.page_first' 7 2 'Structure model' '_citation.page_last' 8 2 'Structure model' '_citation.pdbx_database_id_DOI' 9 2 'Structure model' '_citation.pdbx_database_id_PubMed' 10 2 'Structure model' '_citation.title' 11 2 'Structure model' '_citation.year' 12 3 'Structure model' '_database_2.pdbx_DOI' 13 3 'Structure model' '_database_2.pdbx_database_accession' 14 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 15 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 16 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 17 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 18 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 19 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_comp_id' 20 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 21 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 22 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_atom_id' 23 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_comp_id' 24 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 25 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 26 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 27 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 28 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 29 3 'Structure model' '_pdbx_struct_conn_angle.value' 30 3 'Structure model' '_struct_conn.pdbx_dist_value' 31 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 32 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 33 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 34 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 35 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 36 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 37 4 'Structure model' '_atom_site.B_iso_or_equiv' 38 4 'Structure model' '_atom_site.Cartn_x' 39 4 'Structure model' '_atom_site.Cartn_y' 40 4 'Structure model' '_atom_site.Cartn_z' 41 4 'Structure model' '_atom_site.auth_atom_id' 42 4 'Structure model' '_atom_site.auth_comp_id' 43 4 'Structure model' '_atom_site.label_atom_id' 44 4 'Structure model' '_atom_site.label_comp_id' 45 4 'Structure model' '_atom_site.type_symbol' 46 4 'Structure model' '_chem_comp.formula' 47 4 'Structure model' '_chem_comp.formula_weight' 48 4 'Structure model' '_chem_comp.id' 49 4 'Structure model' '_chem_comp.mon_nstd_flag' 50 4 'Structure model' '_chem_comp.name' 51 4 'Structure model' '_chem_comp.pdbx_synonyms' 52 4 'Structure model' '_chem_comp.type' 53 4 'Structure model' '_pdbx_entity_nonpoly.comp_id' 54 4 'Structure model' '_pdbx_nonpoly_scheme.mon_id' 55 4 'Structure model' '_pdbx_nonpoly_scheme.pdb_mon_id' 56 4 'Structure model' '_pdbx_unobs_or_zero_occ_atoms.auth_atom_id' 57 4 'Structure model' '_pdbx_unobs_or_zero_occ_atoms.auth_comp_id' 58 4 'Structure model' '_pdbx_unobs_or_zero_occ_atoms.label_atom_id' 59 4 'Structure model' '_pdbx_unobs_or_zero_occ_atoms.label_comp_id' 60 4 'Structure model' '_pdbx_validate_close_contact.auth_comp_id_2' 61 4 'Structure model' '_struct_site.details' 62 4 'Structure model' '_struct_site.pdbx_auth_comp_id' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6JNL _pdbx_database_status.recvd_initial_deposition_date 2019-03-17 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Yao, Q.Q.' 1 ? 'Wu, B.X.' 2 ? 'Ma, J.B.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat Commun' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2041-1723 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 10 _citation.language ? _citation.page_first 2063 _citation.page_last 2063 _citation.title 'DNA methylation repels targeting of Arabidopsis REF6.' _citation.year 2019 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41467-019-10026-1 _citation.pdbx_database_id_PubMed 31048693 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Qiu, Q.' 1 0000-0002-0933-4707 primary 'Mei, H.' 2 ? primary 'Deng, X.' 3 ? primary 'He, K.' 4 ? primary 'Wu, B.' 5 ? primary 'Yao, Q.' 6 ? primary 'Zhang, J.' 7 ? primary 'Lu, F.' 8 0000-0002-8321-4818 primary 'Ma, J.' 9 0000-0002-0232-1786 primary 'Cao, X.' 10 0000-0001-9871-0753 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Lysine-specific demethylase REF6' 12026.109 1 1.14.11.- ? ? ? 2 polymer syn ;DNA (5'-D(*TP*TP*CP*TP*CP*TP*GP*TP*TP*TP*TP*G)-3') ; 3625.360 1 ? ? ? ? 3 polymer syn ;DNA (5'-D(*CP*AP*AP*AP*AP*CP*AP*GP*AP*GP*A)-3') ; 3384.265 1 ? ? ? ? 4 non-polymer syn 'ZINC ION' 65.409 3 ? ? ? ? 5 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 6 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 7 non-polymer syn "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" 331.222 1 ? ? ? ? 8 water nat water 18.015 24 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Jumonji domain-containing protein 12,Lysine-specific histone demethylase REF6,Protein RELATIVE OF EARLY FLOWERING 6' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;LMLHKRNICPIKGCGKNFFSHKYLVQHQRVHSDDRPLKCPWKGCKMTFKWAWSRTEHIRVHTGARPYVCAEPDCGQTFRF VSDFSRHKRKTGHSVKKTNKR ; ;LMLHKRNICPIKGCGKNFFSHKYLVQHQRVHSDDRPLKCPWKGCKMTFKWAWSRTEHIRVHTGARPYVCAEPDCGQTFRF VSDFSRHKRKTGHSVKKTNKR ; A ? 2 polydeoxyribonucleotide no no '(DT)(DT)(DC)(DT)(DC)(DT)(DG)(DT)(DT)(DT)(DT)(DG)' TTCTCTGTTTTG D ? 3 polydeoxyribonucleotide no no '(DC)(DA)(DA)(DA)(DA)(DC)(DA)(DG)(DA)(DG)(DA)' CAAAACAGAGA C ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'ZINC ION' ZN 5 'MAGNESIUM ION' MG 6 GLYCEROL GOL 7 "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" D5M 8 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LEU n 1 2 MET n 1 3 LEU n 1 4 HIS n 1 5 LYS n 1 6 ARG n 1 7 ASN n 1 8 ILE n 1 9 CYS n 1 10 PRO n 1 11 ILE n 1 12 LYS n 1 13 GLY n 1 14 CYS n 1 15 GLY n 1 16 LYS n 1 17 ASN n 1 18 PHE n 1 19 PHE n 1 20 SER n 1 21 HIS n 1 22 LYS n 1 23 TYR n 1 24 LEU n 1 25 VAL n 1 26 GLN n 1 27 HIS n 1 28 GLN n 1 29 ARG n 1 30 VAL n 1 31 HIS n 1 32 SER n 1 33 ASP n 1 34 ASP n 1 35 ARG n 1 36 PRO n 1 37 LEU n 1 38 LYS n 1 39 CYS n 1 40 PRO n 1 41 TRP n 1 42 LYS n 1 43 GLY n 1 44 CYS n 1 45 LYS n 1 46 MET n 1 47 THR n 1 48 PHE n 1 49 LYS n 1 50 TRP n 1 51 ALA n 1 52 TRP n 1 53 SER n 1 54 ARG n 1 55 THR n 1 56 GLU n 1 57 HIS n 1 58 ILE n 1 59 ARG n 1 60 VAL n 1 61 HIS n 1 62 THR n 1 63 GLY n 1 64 ALA n 1 65 ARG n 1 66 PRO n 1 67 TYR n 1 68 VAL n 1 69 CYS n 1 70 ALA n 1 71 GLU n 1 72 PRO n 1 73 ASP n 1 74 CYS n 1 75 GLY n 1 76 GLN n 1 77 THR n 1 78 PHE n 1 79 ARG n 1 80 PHE n 1 81 VAL n 1 82 SER n 1 83 ASP n 1 84 PHE n 1 85 SER n 1 86 ARG n 1 87 HIS n 1 88 LYS n 1 89 ARG n 1 90 LYS n 1 91 THR n 1 92 GLY n 1 93 HIS n 1 94 SER n 1 95 VAL n 1 96 LYS n 1 97 LYS n 1 98 THR n 1 99 ASN n 1 100 LYS n 1 101 ARG n 2 1 DT n 2 2 DT n 2 3 DC n 2 4 DT n 2 5 DC n 2 6 DT n 2 7 DG n 2 8 DT n 2 9 DT n 2 10 DT n 2 11 DT n 2 12 DG n 3 1 DC n 3 2 DA n 3 3 DA n 3 4 DA n 3 5 DA n 3 6 DC n 3 7 DA n 3 8 DG n 3 9 DA n 3 10 DG n 3 11 DA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 101 _entity_src_gen.gene_src_common_name 'Mouse-ear cress' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'REF6, JMJ12, PKDM9A, At3g48430, T29H11_50' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Arabidopsis thaliana' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 3702 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 2 1 sample 1 12 'synthetic construct' ? 32630 ? 3 1 sample 1 11 'synthetic construct' ? 32630 ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 D5M non-polymer . "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LEU 1 1260 ? ? ? A . n A 1 2 MET 2 1261 ? ? ? A . n A 1 3 LEU 3 1262 ? ? ? A . n A 1 4 HIS 4 1263 ? ? ? A . n A 1 5 LYS 5 1264 ? ? ? A . n A 1 6 ARG 6 1265 1265 ARG ARG A . n A 1 7 ASN 7 1266 1266 ASN ASN A . n A 1 8 ILE 8 1267 1267 ILE ILE A . n A 1 9 CYS 9 1268 1268 CYS CYS A . n A 1 10 PRO 10 1269 1269 PRO PRO A . n A 1 11 ILE 11 1270 1270 ILE ILE A . n A 1 12 LYS 12 1271 1271 LYS LYS A . n A 1 13 GLY 13 1272 1272 GLY GLY A . n A 1 14 CYS 14 1273 1273 CYS CYS A . n A 1 15 GLY 15 1274 1274 GLY GLY A . n A 1 16 LYS 16 1275 1275 LYS LYS A . n A 1 17 ASN 17 1276 1276 ASN ASN A . n A 1 18 PHE 18 1277 1277 PHE PHE A . n A 1 19 PHE 19 1278 1278 PHE PHE A . n A 1 20 SER 20 1279 1279 SER SER A . n A 1 21 HIS 21 1280 1280 HIS HIS A . n A 1 22 LYS 22 1281 1281 LYS LYS A . n A 1 23 TYR 23 1282 1282 TYR TYR A . n A 1 24 LEU 24 1283 1283 LEU LEU A . n A 1 25 VAL 25 1284 1284 VAL VAL A . n A 1 26 GLN 26 1285 1285 GLN GLN A . n A 1 27 HIS 27 1286 1286 HIS HIS A . n A 1 28 GLN 28 1287 1287 GLN GLN A . n A 1 29 ARG 29 1288 1288 ARG ARG A . n A 1 30 VAL 30 1289 1289 VAL VAL A . n A 1 31 HIS 31 1290 1290 HIS HIS A . n A 1 32 SER 32 1291 1291 SER SER A . n A 1 33 ASP 33 1292 1292 ASP ASP A . n A 1 34 ASP 34 1293 1293 ASP ASP A . n A 1 35 ARG 35 1294 1294 ARG ARG A . n A 1 36 PRO 36 1295 1295 PRO PRO A . n A 1 37 LEU 37 1296 1296 LEU LEU A . n A 1 38 LYS 38 1297 1297 LYS LYS A . n A 1 39 CYS 39 1298 1298 CYS CYS A . n A 1 40 PRO 40 1299 1299 PRO PRO A . n A 1 41 TRP 41 1300 1300 TRP TRP A . n A 1 42 LYS 42 1301 1301 LYS LYS A . n A 1 43 GLY 43 1302 1302 GLY GLY A . n A 1 44 CYS 44 1303 1303 CYS CYS A . n A 1 45 LYS 45 1304 1304 LYS LYS A . n A 1 46 MET 46 1305 1305 MET MET A . n A 1 47 THR 47 1306 1306 THR THR A . n A 1 48 PHE 48 1307 1307 PHE PHE A . n A 1 49 LYS 49 1308 1308 LYS LYS A . n A 1 50 TRP 50 1309 1309 TRP TRP A . n A 1 51 ALA 51 1310 1310 ALA ALA A . n A 1 52 TRP 52 1311 1311 TRP TRP A . n A 1 53 SER 53 1312 1312 SER SER A . n A 1 54 ARG 54 1313 1313 ARG ARG A . n A 1 55 THR 55 1314 1314 THR THR A . n A 1 56 GLU 56 1315 1315 GLU GLU A . n A 1 57 HIS 57 1316 1316 HIS HIS A . n A 1 58 ILE 58 1317 1317 ILE ILE A . n A 1 59 ARG 59 1318 1318 ARG ARG A . n A 1 60 VAL 60 1319 1319 VAL VAL A . n A 1 61 HIS 61 1320 1320 HIS HIS A . n A 1 62 THR 62 1321 1321 THR THR A . n A 1 63 GLY 63 1322 1322 GLY GLY A . n A 1 64 ALA 64 1323 1323 ALA ALA A . n A 1 65 ARG 65 1324 1324 ARG ARG A . n A 1 66 PRO 66 1325 1325 PRO PRO A . n A 1 67 TYR 67 1326 1326 TYR TYR A . n A 1 68 VAL 68 1327 1327 VAL VAL A . n A 1 69 CYS 69 1328 1328 CYS CYS A . n A 1 70 ALA 70 1329 1329 ALA ALA A . n A 1 71 GLU 71 1330 1330 GLU GLU A . n A 1 72 PRO 72 1331 1331 PRO PRO A . n A 1 73 ASP 73 1332 1332 ASP ASP A . n A 1 74 CYS 74 1333 1333 CYS CYS A . n A 1 75 GLY 75 1334 1334 GLY GLY A . n A 1 76 GLN 76 1335 1335 GLN GLN A . n A 1 77 THR 77 1336 1336 THR THR A . n A 1 78 PHE 78 1337 1337 PHE PHE A . n A 1 79 ARG 79 1338 1338 ARG ARG A . n A 1 80 PHE 80 1339 1339 PHE PHE A . n A 1 81 VAL 81 1340 1340 VAL VAL A . n A 1 82 SER 82 1341 1341 SER SER A . n A 1 83 ASP 83 1342 1342 ASP ASP A . n A 1 84 PHE 84 1343 1343 PHE PHE A . n A 1 85 SER 85 1344 1344 SER SER A . n A 1 86 ARG 86 1345 1345 ARG ARG A . n A 1 87 HIS 87 1346 1346 HIS HIS A . n A 1 88 LYS 88 1347 1347 LYS LYS A . n A 1 89 ARG 89 1348 1348 ARG ARG A . n A 1 90 LYS 90 1349 1349 LYS LYS A . n A 1 91 THR 91 1350 1350 THR THR A . n A 1 92 GLY 92 1351 1351 GLY GLY A . n A 1 93 HIS 93 1352 1352 HIS HIS A . n A 1 94 SER 94 1353 1353 SER SER A . n A 1 95 VAL 95 1354 ? ? ? A . n A 1 96 LYS 96 1355 ? ? ? A . n A 1 97 LYS 97 1356 ? ? ? A . n A 1 98 THR 98 1357 ? ? ? A . n A 1 99 ASN 99 1358 ? ? ? A . n A 1 100 LYS 100 1359 ? ? ? A . n A 1 101 ARG 101 1360 ? ? ? A . n B 2 1 DT 1 1 1 DT DT D . n B 2 2 DT 2 2 2 DT DT D . n B 2 3 DC 3 3 3 DC DC D . n B 2 4 DT 4 4 4 DT DT D . n B 2 5 DC 5 5 5 DC DC D . n B 2 6 DT 6 6 6 DT DT D . n B 2 7 DG 7 7 7 DG DG D . n B 2 8 DT 8 8 8 DT DT D . n B 2 9 DT 9 9 9 DT DT D . n B 2 10 DT 10 10 10 DT DT D . n B 2 11 DT 11 11 11 DT DT D . n B 2 12 DG 12 12 12 DG DG D . n C 3 1 DC 1 1 1 DC DC C . n C 3 2 DA 2 2 2 DA DA C . n C 3 3 DA 3 3 3 DA DA C . n C 3 4 DA 4 4 4 DA DA C . n C 3 5 DA 5 5 5 DA DA C . n C 3 6 DC 6 6 6 DC DC C . n C 3 7 DA 7 7 7 DA DA C . n C 3 8 DG 8 8 8 DG DG C . n C 3 9 DA 9 9 9 DA DA C . n C 3 10 DG 10 10 10 DG DG C . n C 3 11 DA 11 11 11 DA DA C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ZN 1 1401 1 ZN ZN A . E 4 ZN 1 1402 2 ZN ZN A . F 4 ZN 1 1403 3 ZN ZN A . G 5 MG 1 1404 1 MG MG A . H 6 GOL 1 101 1 GOL GOL D . I 7 D5M 1 101 12 D5M DA C . J 8 HOH 1 1501 29 HOH HOH A . J 8 HOH 2 1502 33 HOH HOH A . J 8 HOH 3 1503 8 HOH HOH A . J 8 HOH 4 1504 1 HOH HOH A . J 8 HOH 5 1505 3 HOH HOH A . J 8 HOH 6 1506 30 HOH HOH A . J 8 HOH 7 1507 21 HOH HOH A . J 8 HOH 8 1508 14 HOH HOH A . J 8 HOH 9 1509 32 HOH HOH A . K 8 HOH 1 201 38 HOH HOH D . K 8 HOH 2 202 7 HOH HOH D . K 8 HOH 3 203 6 HOH HOH D . K 8 HOH 4 204 12 HOH HOH D . K 8 HOH 5 205 5 HOH HOH D . K 8 HOH 6 206 4 HOH HOH D . K 8 HOH 7 207 9 HOH HOH D . K 8 HOH 8 208 39 HOH HOH D . L 8 HOH 1 201 28 HOH HOH C . L 8 HOH 2 202 11 HOH HOH C . L 8 HOH 3 203 16 HOH HOH C . L 8 HOH 4 204 34 HOH HOH C . L 8 HOH 5 205 13 HOH HOH C . L 8 HOH 6 206 26 HOH HOH C . L 8 HOH 7 207 18 HOH HOH C . # _pdbx_unobs_or_zero_occ_atoms.id 1 _pdbx_unobs_or_zero_occ_atoms.PDB_model_num 1 _pdbx_unobs_or_zero_occ_atoms.polymer_flag N _pdbx_unobs_or_zero_occ_atoms.occupancy_flag 1 _pdbx_unobs_or_zero_occ_atoms.auth_asym_id C _pdbx_unobs_or_zero_occ_atoms.auth_comp_id D5M _pdbx_unobs_or_zero_occ_atoms.auth_seq_id 101 _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code ? _pdbx_unobs_or_zero_occ_atoms.auth_atom_id O3P _pdbx_unobs_or_zero_occ_atoms.label_alt_id ? _pdbx_unobs_or_zero_occ_atoms.label_asym_id I _pdbx_unobs_or_zero_occ_atoms.label_comp_id D5M _pdbx_unobs_or_zero_occ_atoms.label_seq_id 1 _pdbx_unobs_or_zero_occ_atoms.label_atom_id O3P # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0135 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-3000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-3000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 6JNL _cell.details ? _cell.formula_units_Z ? _cell.length_a 89.160 _cell.length_a_esd ? _cell.length_b 89.160 _cell.length_b_esd ? _cell.length_c 72.603 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6JNL _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6JNL _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.79 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 67.55 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '12% PEG 3,350, 0.2 M NH4F' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 S 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2016-04-18 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97853 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRF BEAMLINE BL19U1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97853 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL19U1 _diffrn_source.pdbx_synchrotron_site SSRF # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6JNL _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.05 _reflns.d_resolution_low 30 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 18924 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.9 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 17.7 _reflns.pdbx_Rmerge_I_obs 0.053 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 52.16 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.05 _reflns_shell.d_res_low 2.12 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1211 _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.59 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] 0.53 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][2] 0.53 _refine.aniso_B[2][3] 0.00 _refine.aniso_B[3][3] -1.06 _refine.B_iso_max ? _refine.B_iso_mean 65.583 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.966 _refine.correlation_coeff_Fo_to_Fc_free 0.953 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6JNL _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.15 _refine.ls_d_res_low 30.00 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 15643 _refine.ls_number_reflns_R_free 810 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.84 _refine.ls_percent_reflns_R_free 4.9 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.20701 _refine.ls_R_factor_R_free 0.24923 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.20488 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 4R2S _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.155 _refine.pdbx_overall_ESU_R_Free 0.155 _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 5.888 _refine.overall_SU_ML 0.140 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id 1 _refine_hist.pdbx_number_atoms_protein 739 _refine_hist.pdbx_number_atoms_nucleic_acid 465 _refine_hist.pdbx_number_atoms_ligand 31 _refine_hist.number_atoms_solvent 24 _refine_hist.number_atoms_total 1259 _refine_hist.d_res_high 2.15 _refine_hist.d_res_low 30.00 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.015 0.016 1312 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.003 0.020 991 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.963 1.576 1863 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 1.468 3.000 2298 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 7.388 5.000 88 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 35.889 20.526 38 ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? 19.334 15.000 132 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? 24.087 15.000 9 ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.102 0.200 171 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.014 0.021 1132 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.002 0.020 323 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? 5.633 6.716 355 ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? 5.632 6.711 354 ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? 7.172 10.038 442 ? r_mcangle_it ? ? 'X-RAY DIFFRACTION' ? 7.168 10.045 443 ? r_mcangle_other ? ? 'X-RAY DIFFRACTION' ? 6.142 6.446 957 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 6.122 6.447 957 ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? 7.871 9.559 1422 ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? 9.529 56.078 1716 ? r_long_range_B_refined ? ? 'X-RAY DIFFRACTION' ? 9.536 56.078 1717 ? r_long_range_B_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_rigid_bond_restr ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_free ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_bonded ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 2.150 _refine_ls_shell.d_res_low 2.206 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 67 _refine_ls_shell.number_reflns_R_work 1131 _refine_ls_shell.percent_reflns_obs 99.92 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.359 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.353 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 6JNL _struct.title 'REF6 ZnF2-4-NAC004 complex' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6JNL _struct_keywords.text 'REF6, zinc finger, 5mC, DNA complex, DNA BINDING PROTEIN-DNA complex' _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN/DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? G N N 5 ? H N N 6 ? I N N 7 ? J N N 8 ? K N N 8 ? L N N 8 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP REF6_ARATH Q9STM3 ? 1 ;LMLHKRNICPIKGCGKNFFSHKYLVQHQRVHSDDRPLKCPWKGCKMTFKWAWSRTEHIRVHTGARPYVCAEPDCGQTFRF VSDFSRHKRKTGHSVKKTNKR ; 1260 2 PDB 6JNL 6JNL ? 2 ? 1 3 PDB 6JNL 6JNL ? 3 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6JNL A 1 ? 101 ? Q9STM3 1260 ? 1360 ? 1260 1360 2 2 6JNL D 1 ? 12 ? 6JNL 1 ? 12 ? 1 12 3 3 6JNL C 1 ? 11 ? 6JNL 1 ? 11 ? 1 11 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3750 ? 1 MORE -39 ? 1 'SSA (A^2)' 8930 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 SER A 20 ? GLN A 28 ? SER A 1279 GLN A 1287 1 ? 9 HELX_P HELX_P2 AA2 ARG A 29 ? SER A 32 ? ARG A 1288 SER A 1291 5 ? 4 HELX_P HELX_P3 AA3 TRP A 50 ? GLY A 63 ? TRP A 1309 GLY A 1322 1 ? 14 HELX_P HELX_P4 AA4 PHE A 80 ? GLY A 92 ? PHE A 1339 GLY A 1351 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A CYS 9 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 1268 A ZN 1401 1_555 ? ? ? ? ? ? ? 2.379 ? ? metalc2 metalc ? ? A CYS 14 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 1273 A ZN 1401 1_555 ? ? ? ? ? ? ? 2.366 ? ? metalc3 metalc ? ? A HIS 27 NE2 ? ? ? 1_555 D ZN . ZN ? ? A HIS 1286 A ZN 1401 1_555 ? ? ? ? ? ? ? 2.266 ? ? metalc4 metalc ? ? A HIS 31 NE2 ? ? ? 1_555 D ZN . ZN ? ? A HIS 1290 A ZN 1401 1_555 ? ? ? ? ? ? ? 2.052 ? ? metalc5 metalc ? ? A CYS 39 SG ? ? ? 1_555 F ZN . ZN ? ? A CYS 1298 A ZN 1403 1_555 ? ? ? ? ? ? ? 2.214 ? ? metalc6 metalc ? ? A CYS 39 O ? ? ? 1_555 G MG . MG ? ? A CYS 1298 A MG 1404 1_555 ? ? ? ? ? ? ? 2.570 ? ? metalc7 metalc ? ? A TRP 41 O ? ? ? 1_555 G MG . MG ? ? A TRP 1300 A MG 1404 1_555 ? ? ? ? ? ? ? 2.436 ? ? metalc8 metalc ? ? A CYS 44 SG ? ? ? 1_555 F ZN . ZN ? ? A CYS 1303 A ZN 1403 1_555 ? ? ? ? ? ? ? 2.277 ? ? metalc9 metalc ? ? A CYS 44 O ? ? ? 1_555 G MG . MG ? ? A CYS 1303 A MG 1404 1_555 ? ? ? ? ? ? ? 2.838 ? ? metalc10 metalc ? ? A HIS 57 NE2 ? ? ? 1_555 F ZN . ZN ? ? A HIS 1316 A ZN 1403 1_555 ? ? ? ? ? ? ? 2.038 ? ? metalc11 metalc ? ? A HIS 61 NE2 ? ? ? 1_555 F ZN . ZN ? ? A HIS 1320 A ZN 1403 1_555 ? ? ? ? ? ? ? 2.053 ? ? metalc12 metalc ? ? A CYS 69 SG ? ? ? 1_555 E ZN . ZN ? ? A CYS 1328 A ZN 1402 1_555 ? ? ? ? ? ? ? 2.282 ? ? metalc13 metalc ? ? A CYS 74 SG ? ? ? 1_555 E ZN . ZN ? ? A CYS 1333 A ZN 1402 1_555 ? ? ? ? ? ? ? 2.319 ? ? metalc14 metalc ? ? A HIS 87 NE2 ? ? ? 1_555 E ZN . ZN ? ? A HIS 1346 A ZN 1402 1_555 ? ? ? ? ? ? ? 2.174 ? ? metalc15 metalc ? ? A HIS 93 ND1 ? ? ? 1_555 E ZN . ZN ? ? A HIS 1352 A ZN 1402 1_555 ? ? ? ? ? ? ? 2.194 ? ? hydrog1 hydrog ? ? B DT 2 N3 ? ? ? 1_555 C DA 11 N1 ? ? D DT 2 C DA 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DT 2 O4 ? ? ? 1_555 C DA 11 N6 ? ? D DT 2 C DA 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DC 3 N3 ? ? ? 1_555 C DG 10 N1 ? ? D DC 3 C DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DC 3 N4 ? ? ? 1_555 C DG 10 O6 ? ? D DC 3 C DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DC 3 O2 ? ? ? 1_555 C DG 10 N2 ? ? D DC 3 C DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DT 4 N3 ? ? ? 1_555 C DA 9 N1 ? ? D DT 4 C DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DT 4 O4 ? ? ? 1_555 C DA 9 N6 ? ? D DT 4 C DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DC 5 N3 ? ? ? 1_555 C DG 8 N1 ? ? D DC 5 C DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DC 5 N4 ? ? ? 1_555 C DG 8 O6 ? ? D DC 5 C DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DC 5 O2 ? ? ? 1_555 C DG 8 N2 ? ? D DC 5 C DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DT 6 N3 ? ? ? 1_555 C DA 7 N1 ? ? D DT 6 C DA 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DT 6 O4 ? ? ? 1_555 C DA 7 N6 ? ? D DT 6 C DA 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DG 7 N1 ? ? ? 1_555 C DC 6 N3 ? ? D DG 7 C DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DG 7 N2 ? ? ? 1_555 C DC 6 O2 ? ? D DG 7 C DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DG 7 O6 ? ? ? 1_555 C DC 6 N4 ? ? D DG 7 C DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DT 8 N3 ? ? ? 1_555 C DA 5 N1 ? ? D DT 8 C DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DT 8 O4 ? ? ? 1_555 C DA 5 N6 ? ? D DT 8 C DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DT 9 N3 ? ? ? 1_555 C DA 4 N1 ? ? D DT 9 C DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DT 9 O4 ? ? ? 1_555 C DA 4 N6 ? ? D DT 9 C DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B DT 10 N3 ? ? ? 1_555 C DA 3 N1 ? ? D DT 10 C DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DT 10 O4 ? ? ? 1_555 C DA 3 N6 ? ? D DT 10 C DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DT 11 N3 ? ? ? 1_555 C DA 2 N1 ? ? D DT 11 C DA 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B DT 11 O4 ? ? ? 1_555 C DA 2 N6 ? ? D DT 11 C DA 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B DG 12 N1 ? ? ? 1_555 C DC 1 N3 ? ? D DG 12 C DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B DG 12 N2 ? ? ? 1_555 C DC 1 O2 ? ? D DG 12 C DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B DG 12 O6 ? ? ? 1_555 C DC 1 N4 ? ? D DG 12 C DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 9 ? A CYS 1268 ? 1_555 ZN ? D ZN . ? A ZN 1401 ? 1_555 SG ? A CYS 14 ? A CYS 1273 ? 1_555 119.2 ? 2 SG ? A CYS 9 ? A CYS 1268 ? 1_555 ZN ? D ZN . ? A ZN 1401 ? 1_555 NE2 ? A HIS 27 ? A HIS 1286 ? 1_555 114.4 ? 3 SG ? A CYS 14 ? A CYS 1273 ? 1_555 ZN ? D ZN . ? A ZN 1401 ? 1_555 NE2 ? A HIS 27 ? A HIS 1286 ? 1_555 108.1 ? 4 SG ? A CYS 9 ? A CYS 1268 ? 1_555 ZN ? D ZN . ? A ZN 1401 ? 1_555 NE2 ? A HIS 31 ? A HIS 1290 ? 1_555 93.2 ? 5 SG ? A CYS 14 ? A CYS 1273 ? 1_555 ZN ? D ZN . ? A ZN 1401 ? 1_555 NE2 ? A HIS 31 ? A HIS 1290 ? 1_555 128.3 ? 6 NE2 ? A HIS 27 ? A HIS 1286 ? 1_555 ZN ? D ZN . ? A ZN 1401 ? 1_555 NE2 ? A HIS 31 ? A HIS 1290 ? 1_555 90.5 ? 7 SG ? A CYS 39 ? A CYS 1298 ? 1_555 ZN ? F ZN . ? A ZN 1403 ? 1_555 SG ? A CYS 44 ? A CYS 1303 ? 1_555 111.8 ? 8 SG ? A CYS 39 ? A CYS 1298 ? 1_555 ZN ? F ZN . ? A ZN 1403 ? 1_555 NE2 ? A HIS 57 ? A HIS 1316 ? 1_555 102.0 ? 9 SG ? A CYS 44 ? A CYS 1303 ? 1_555 ZN ? F ZN . ? A ZN 1403 ? 1_555 NE2 ? A HIS 57 ? A HIS 1316 ? 1_555 118.4 ? 10 SG ? A CYS 39 ? A CYS 1298 ? 1_555 ZN ? F ZN . ? A ZN 1403 ? 1_555 NE2 ? A HIS 61 ? A HIS 1320 ? 1_555 111.4 ? 11 SG ? A CYS 44 ? A CYS 1303 ? 1_555 ZN ? F ZN . ? A ZN 1403 ? 1_555 NE2 ? A HIS 61 ? A HIS 1320 ? 1_555 103.9 ? 12 NE2 ? A HIS 57 ? A HIS 1316 ? 1_555 ZN ? F ZN . ? A ZN 1403 ? 1_555 NE2 ? A HIS 61 ? A HIS 1320 ? 1_555 109.6 ? 13 O ? A CYS 39 ? A CYS 1298 ? 1_555 MG ? G MG . ? A MG 1404 ? 1_555 O ? A TRP 41 ? A TRP 1300 ? 1_555 98.2 ? 14 O ? A CYS 39 ? A CYS 1298 ? 1_555 MG ? G MG . ? A MG 1404 ? 1_555 O ? A CYS 44 ? A CYS 1303 ? 1_555 97.2 ? 15 O ? A TRP 41 ? A TRP 1300 ? 1_555 MG ? G MG . ? A MG 1404 ? 1_555 O ? A CYS 44 ? A CYS 1303 ? 1_555 94.7 ? 16 SG ? A CYS 69 ? A CYS 1328 ? 1_555 ZN ? E ZN . ? A ZN 1402 ? 1_555 SG ? A CYS 74 ? A CYS 1333 ? 1_555 107.2 ? 17 SG ? A CYS 69 ? A CYS 1328 ? 1_555 ZN ? E ZN . ? A ZN 1402 ? 1_555 NE2 ? A HIS 87 ? A HIS 1346 ? 1_555 106.7 ? 18 SG ? A CYS 74 ? A CYS 1333 ? 1_555 ZN ? E ZN . ? A ZN 1402 ? 1_555 NE2 ? A HIS 87 ? A HIS 1346 ? 1_555 106.2 ? 19 SG ? A CYS 69 ? A CYS 1328 ? 1_555 ZN ? E ZN . ? A ZN 1402 ? 1_555 ND1 ? A HIS 93 ? A HIS 1352 ? 1_555 105.3 ? 20 SG ? A CYS 74 ? A CYS 1333 ? 1_555 ZN ? E ZN . ? A ZN 1402 ? 1_555 ND1 ? A HIS 93 ? A HIS 1352 ? 1_555 112.7 ? 21 NE2 ? A HIS 87 ? A HIS 1346 ? 1_555 ZN ? E ZN . ? A ZN 1402 ? 1_555 ND1 ? A HIS 93 ? A HIS 1352 ? 1_555 118.1 ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 2 ? AA2 ? 2 ? AA3 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA2 1 2 ? anti-parallel AA3 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ASN A 7 ? ILE A 8 ? ASN A 1266 ILE A 1267 AA1 2 ASN A 17 ? PHE A 18 ? ASN A 1276 PHE A 1277 AA2 1 LEU A 37 ? LYS A 38 ? LEU A 1296 LYS A 1297 AA2 2 THR A 47 ? PHE A 48 ? THR A 1306 PHE A 1307 AA3 1 TYR A 67 ? VAL A 68 ? TYR A 1326 VAL A 1327 AA3 2 THR A 77 ? PHE A 78 ? THR A 1336 PHE A 1337 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ASN A 7 ? N ASN A 1266 O PHE A 18 ? O PHE A 1277 AA2 1 2 N LEU A 37 ? N LEU A 1296 O PHE A 48 ? O PHE A 1307 AA3 1 2 N TYR A 67 ? N TYR A 1326 O PHE A 78 ? O PHE A 1337 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A ZN 1401 ? 4 'binding site for residue ZN A 1401' AC2 Software A ZN 1402 ? 4 'binding site for residue ZN A 1402' AC3 Software A ZN 1403 ? 4 'binding site for residue ZN A 1403' AC4 Software A MG 1404 ? 3 'binding site for residue MG A 1404' AC5 Software D GOL 101 ? 5 'binding site for residue GOL D 101' AC6 Software C D5M 101 ? 6 'binding site for residue D5M C 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 CYS A 9 ? CYS A 1268 . ? 1_555 ? 2 AC1 4 CYS A 14 ? CYS A 1273 . ? 1_555 ? 3 AC1 4 HIS A 27 ? HIS A 1286 . ? 1_555 ? 4 AC1 4 HIS A 31 ? HIS A 1290 . ? 1_555 ? 5 AC2 4 CYS A 69 ? CYS A 1328 . ? 1_555 ? 6 AC2 4 CYS A 74 ? CYS A 1333 . ? 1_555 ? 7 AC2 4 HIS A 87 ? HIS A 1346 . ? 1_555 ? 8 AC2 4 HIS A 93 ? HIS A 1352 . ? 1_555 ? 9 AC3 4 CYS A 39 ? CYS A 1298 . ? 1_555 ? 10 AC3 4 CYS A 44 ? CYS A 1303 . ? 1_555 ? 11 AC3 4 HIS A 57 ? HIS A 1316 . ? 1_555 ? 12 AC3 4 HIS A 61 ? HIS A 1320 . ? 1_555 ? 13 AC4 3 CYS A 39 ? CYS A 1298 . ? 1_555 ? 14 AC4 3 TRP A 41 ? TRP A 1300 . ? 1_555 ? 15 AC4 3 CYS A 44 ? CYS A 1303 . ? 1_555 ? 16 AC5 5 DG C 10 ? DG C 10 . ? 1_555 ? 17 AC5 5 DA C 11 ? DA C 11 . ? 1_555 ? 18 AC5 5 DT B 4 ? DT D 4 . ? 1_555 ? 19 AC5 5 DC B 5 ? DC D 5 . ? 1_555 ? 20 AC5 5 HOH K . ? HOH D 201 . ? 1_555 ? 21 AC6 6 PRO A 40 ? PRO A 1299 . ? 3_544 ? 22 AC6 6 TRP A 41 ? TRP A 1300 . ? 3_544 ? 23 AC6 6 LYS A 42 ? LYS A 1301 . ? 3_544 ? 24 AC6 6 DA C 11 ? DA C 11 . ? 1_555 ? 25 AC6 6 DT B 1 ? DT D 1 . ? 1_555 ? 26 AC6 6 DT B 2 ? DT D 2 . ? 1_555 ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 "O3'" _pdbx_validate_close_contact.auth_asym_id_1 C _pdbx_validate_close_contact.auth_comp_id_1 DA _pdbx_validate_close_contact.auth_seq_id_1 11 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 P _pdbx_validate_close_contact.auth_asym_id_2 C _pdbx_validate_close_contact.auth_comp_id_2 D5M _pdbx_validate_close_contact.auth_seq_id_2 101 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.62 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O5'" D DT 2 ? ? "C5'" D DT 2 ? ? "C4'" D DT 2 ? ? 103.45 109.40 -5.95 0.80 N 2 1 "O5'" C DA 9 ? ? P C DA 9 ? ? OP2 C DA 9 ? ? 99.69 105.70 -6.01 0.90 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 1271 ? ? 35.91 -125.90 2 1 CYS A 1273 ? ? -96.87 -81.04 3 1 ASP A 1332 ? ? 73.37 -1.08 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id D _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 207 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id K _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A LEU 1260 ? A LEU 1 2 1 Y 1 A MET 1261 ? A MET 2 3 1 Y 1 A LEU 1262 ? A LEU 3 4 1 Y 1 A HIS 1263 ? A HIS 4 5 1 Y 1 A LYS 1264 ? A LYS 5 6 1 Y 1 A VAL 1354 ? A VAL 95 7 1 Y 1 A LYS 1355 ? A LYS 96 8 1 Y 1 A LYS 1356 ? A LYS 97 9 1 Y 1 A THR 1357 ? A THR 98 10 1 Y 1 A ASN 1358 ? A ASN 99 11 1 Y 1 A LYS 1359 ? A LYS 100 12 1 Y 1 A ARG 1360 ? A ARG 101 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 D5M "O5'" O N N 88 D5M "C5'" C N N 89 D5M "C4'" C N R 90 D5M "O4'" O N N 91 D5M "C3'" C N S 92 D5M "O3'" O N N 93 D5M "C2'" C N N 94 D5M "C1'" C N R 95 D5M N9 N Y N 96 D5M C8 C Y N 97 D5M N7 N Y N 98 D5M C5 C Y N 99 D5M C6 C Y N 100 D5M N6 N N N 101 D5M N1 N Y N 102 D5M C2 C Y N 103 D5M N3 N Y N 104 D5M C4 C Y N 105 D5M P P N N 106 D5M O1P O N N 107 D5M O3P O N N 108 D5M O2P O N N 109 D5M "H5'1" H N N 110 D5M "H5'2" H N N 111 D5M "H4'" H N N 112 D5M H1 H N N 113 D5M "H3'" H N N 114 D5M "H2'1" H N N 115 D5M "H2'2" H N N 116 D5M "H1'" H N N 117 D5M H8 H N N 118 D5M HN61 H N N 119 D5M HN62 H N N 120 D5M H2 H N N 121 D5M H3P H N N 122 D5M H2P H N N 123 DA OP3 O N N 124 DA P P N N 125 DA OP1 O N N 126 DA OP2 O N N 127 DA "O5'" O N N 128 DA "C5'" C N N 129 DA "C4'" C N R 130 DA "O4'" O N N 131 DA "C3'" C N S 132 DA "O3'" O N N 133 DA "C2'" C N N 134 DA "C1'" C N R 135 DA N9 N Y N 136 DA C8 C Y N 137 DA N7 N Y N 138 DA C5 C Y N 139 DA C6 C Y N 140 DA N6 N N N 141 DA N1 N Y N 142 DA C2 C Y N 143 DA N3 N Y N 144 DA C4 C Y N 145 DA HOP3 H N N 146 DA HOP2 H N N 147 DA "H5'" H N N 148 DA "H5''" H N N 149 DA "H4'" H N N 150 DA "H3'" H N N 151 DA "HO3'" H N N 152 DA "H2'" H N N 153 DA "H2''" H N N 154 DA "H1'" H N N 155 DA H8 H N N 156 DA H61 H N N 157 DA H62 H N N 158 DA H2 H N N 159 DC OP3 O N N 160 DC P P N N 161 DC OP1 O N N 162 DC OP2 O N N 163 DC "O5'" O N N 164 DC "C5'" C N N 165 DC "C4'" C N R 166 DC "O4'" O N N 167 DC "C3'" C N S 168 DC "O3'" O N N 169 DC "C2'" C N N 170 DC "C1'" C N R 171 DC N1 N N N 172 DC C2 C N N 173 DC O2 O N N 174 DC N3 N N N 175 DC C4 C N N 176 DC N4 N N N 177 DC C5 C N N 178 DC C6 C N N 179 DC HOP3 H N N 180 DC HOP2 H N N 181 DC "H5'" H N N 182 DC "H5''" H N N 183 DC "H4'" H N N 184 DC "H3'" H N N 185 DC "HO3'" H N N 186 DC "H2'" H N N 187 DC "H2''" H N N 188 DC "H1'" H N N 189 DC H41 H N N 190 DC H42 H N N 191 DC H5 H N N 192 DC H6 H N N 193 DG OP3 O N N 194 DG P P N N 195 DG OP1 O N N 196 DG OP2 O N N 197 DG "O5'" O N N 198 DG "C5'" C N N 199 DG "C4'" C N R 200 DG "O4'" O N N 201 DG "C3'" C N S 202 DG "O3'" O N N 203 DG "C2'" C N N 204 DG "C1'" C N R 205 DG N9 N Y N 206 DG C8 C Y N 207 DG N7 N Y N 208 DG C5 C Y N 209 DG C6 C N N 210 DG O6 O N N 211 DG N1 N N N 212 DG C2 C N N 213 DG N2 N N N 214 DG N3 N N N 215 DG C4 C Y N 216 DG HOP3 H N N 217 DG HOP2 H N N 218 DG "H5'" H N N 219 DG "H5''" H N N 220 DG "H4'" H N N 221 DG "H3'" H N N 222 DG "HO3'" H N N 223 DG "H2'" H N N 224 DG "H2''" H N N 225 DG "H1'" H N N 226 DG H8 H N N 227 DG H1 H N N 228 DG H21 H N N 229 DG H22 H N N 230 DT OP3 O N N 231 DT P P N N 232 DT OP1 O N N 233 DT OP2 O N N 234 DT "O5'" O N N 235 DT "C5'" C N N 236 DT "C4'" C N R 237 DT "O4'" O N N 238 DT "C3'" C N S 239 DT "O3'" O N N 240 DT "C2'" C N N 241 DT "C1'" C N R 242 DT N1 N N N 243 DT C2 C N N 244 DT O2 O N N 245 DT N3 N N N 246 DT C4 C N N 247 DT O4 O N N 248 DT C5 C N N 249 DT C7 C N N 250 DT C6 C N N 251 DT HOP3 H N N 252 DT HOP2 H N N 253 DT "H5'" H N N 254 DT "H5''" H N N 255 DT "H4'" H N N 256 DT "H3'" H N N 257 DT "HO3'" H N N 258 DT "H2'" H N N 259 DT "H2''" H N N 260 DT "H1'" H N N 261 DT H3 H N N 262 DT H71 H N N 263 DT H72 H N N 264 DT H73 H N N 265 DT H6 H N N 266 GLN N N N N 267 GLN CA C N S 268 GLN C C N N 269 GLN O O N N 270 GLN CB C N N 271 GLN CG C N N 272 GLN CD C N N 273 GLN OE1 O N N 274 GLN NE2 N N N 275 GLN OXT O N N 276 GLN H H N N 277 GLN H2 H N N 278 GLN HA H N N 279 GLN HB2 H N N 280 GLN HB3 H N N 281 GLN HG2 H N N 282 GLN HG3 H N N 283 GLN HE21 H N N 284 GLN HE22 H N N 285 GLN HXT H N N 286 GLU N N N N 287 GLU CA C N S 288 GLU C C N N 289 GLU O O N N 290 GLU CB C N N 291 GLU CG C N N 292 GLU CD C N N 293 GLU OE1 O N N 294 GLU OE2 O N N 295 GLU OXT O N N 296 GLU H H N N 297 GLU H2 H N N 298 GLU HA H N N 299 GLU HB2 H N N 300 GLU HB3 H N N 301 GLU HG2 H N N 302 GLU HG3 H N N 303 GLU HE2 H N N 304 GLU HXT H N N 305 GLY N N N N 306 GLY CA C N N 307 GLY C C N N 308 GLY O O N N 309 GLY OXT O N N 310 GLY H H N N 311 GLY H2 H N N 312 GLY HA2 H N N 313 GLY HA3 H N N 314 GLY HXT H N N 315 GOL C1 C N N 316 GOL O1 O N N 317 GOL C2 C N N 318 GOL O2 O N N 319 GOL C3 C N N 320 GOL O3 O N N 321 GOL H11 H N N 322 GOL H12 H N N 323 GOL HO1 H N N 324 GOL H2 H N N 325 GOL HO2 H N N 326 GOL H31 H N N 327 GOL H32 H N N 328 GOL HO3 H N N 329 HIS N N N N 330 HIS CA C N S 331 HIS C C N N 332 HIS O O N N 333 HIS CB C N N 334 HIS CG C Y N 335 HIS ND1 N Y N 336 HIS CD2 C Y N 337 HIS CE1 C Y N 338 HIS NE2 N Y N 339 HIS OXT O N N 340 HIS H H N N 341 HIS H2 H N N 342 HIS HA H N N 343 HIS HB2 H N N 344 HIS HB3 H N N 345 HIS HD1 H N N 346 HIS HD2 H N N 347 HIS HE1 H N N 348 HIS HE2 H N N 349 HIS HXT H N N 350 HOH O O N N 351 HOH H1 H N N 352 HOH H2 H N N 353 ILE N N N N 354 ILE CA C N S 355 ILE C C N N 356 ILE O O N N 357 ILE CB C N S 358 ILE CG1 C N N 359 ILE CG2 C N N 360 ILE CD1 C N N 361 ILE OXT O N N 362 ILE H H N N 363 ILE H2 H N N 364 ILE HA H N N 365 ILE HB H N N 366 ILE HG12 H N N 367 ILE HG13 H N N 368 ILE HG21 H N N 369 ILE HG22 H N N 370 ILE HG23 H N N 371 ILE HD11 H N N 372 ILE HD12 H N N 373 ILE HD13 H N N 374 ILE HXT H N N 375 LEU N N N N 376 LEU CA C N S 377 LEU C C N N 378 LEU O O N N 379 LEU CB C N N 380 LEU CG C N N 381 LEU CD1 C N N 382 LEU CD2 C N N 383 LEU OXT O N N 384 LEU H H N N 385 LEU H2 H N N 386 LEU HA H N N 387 LEU HB2 H N N 388 LEU HB3 H N N 389 LEU HG H N N 390 LEU HD11 H N N 391 LEU HD12 H N N 392 LEU HD13 H N N 393 LEU HD21 H N N 394 LEU HD22 H N N 395 LEU HD23 H N N 396 LEU HXT H N N 397 LYS N N N N 398 LYS CA C N S 399 LYS C C N N 400 LYS O O N N 401 LYS CB C N N 402 LYS CG C N N 403 LYS CD C N N 404 LYS CE C N N 405 LYS NZ N N N 406 LYS OXT O N N 407 LYS H H N N 408 LYS H2 H N N 409 LYS HA H N N 410 LYS HB2 H N N 411 LYS HB3 H N N 412 LYS HG2 H N N 413 LYS HG3 H N N 414 LYS HD2 H N N 415 LYS HD3 H N N 416 LYS HE2 H N N 417 LYS HE3 H N N 418 LYS HZ1 H N N 419 LYS HZ2 H N N 420 LYS HZ3 H N N 421 LYS HXT H N N 422 MET N N N N 423 MET CA C N S 424 MET C C N N 425 MET O O N N 426 MET CB C N N 427 MET CG C N N 428 MET SD S N N 429 MET CE C N N 430 MET OXT O N N 431 MET H H N N 432 MET H2 H N N 433 MET HA H N N 434 MET HB2 H N N 435 MET HB3 H N N 436 MET HG2 H N N 437 MET HG3 H N N 438 MET HE1 H N N 439 MET HE2 H N N 440 MET HE3 H N N 441 MET HXT H N N 442 MG MG MG N N 443 PHE N N N N 444 PHE CA C N S 445 PHE C C N N 446 PHE O O N N 447 PHE CB C N N 448 PHE CG C Y N 449 PHE CD1 C Y N 450 PHE CD2 C Y N 451 PHE CE1 C Y N 452 PHE CE2 C Y N 453 PHE CZ C Y N 454 PHE OXT O N N 455 PHE H H N N 456 PHE H2 H N N 457 PHE HA H N N 458 PHE HB2 H N N 459 PHE HB3 H N N 460 PHE HD1 H N N 461 PHE HD2 H N N 462 PHE HE1 H N N 463 PHE HE2 H N N 464 PHE HZ H N N 465 PHE HXT H N N 466 PRO N N N N 467 PRO CA C N S 468 PRO C C N N 469 PRO O O N N 470 PRO CB C N N 471 PRO CG C N N 472 PRO CD C N N 473 PRO OXT O N N 474 PRO H H N N 475 PRO HA H N N 476 PRO HB2 H N N 477 PRO HB3 H N N 478 PRO HG2 H N N 479 PRO HG3 H N N 480 PRO HD2 H N N 481 PRO HD3 H N N 482 PRO HXT H N N 483 SER N N N N 484 SER CA C N S 485 SER C C N N 486 SER O O N N 487 SER CB C N N 488 SER OG O N N 489 SER OXT O N N 490 SER H H N N 491 SER H2 H N N 492 SER HA H N N 493 SER HB2 H N N 494 SER HB3 H N N 495 SER HG H N N 496 SER HXT H N N 497 THR N N N N 498 THR CA C N S 499 THR C C N N 500 THR O O N N 501 THR CB C N R 502 THR OG1 O N N 503 THR CG2 C N N 504 THR OXT O N N 505 THR H H N N 506 THR H2 H N N 507 THR HA H N N 508 THR HB H N N 509 THR HG1 H N N 510 THR HG21 H N N 511 THR HG22 H N N 512 THR HG23 H N N 513 THR HXT H N N 514 TRP N N N N 515 TRP CA C N S 516 TRP C C N N 517 TRP O O N N 518 TRP CB C N N 519 TRP CG C Y N 520 TRP CD1 C Y N 521 TRP CD2 C Y N 522 TRP NE1 N Y N 523 TRP CE2 C Y N 524 TRP CE3 C Y N 525 TRP CZ2 C Y N 526 TRP CZ3 C Y N 527 TRP CH2 C Y N 528 TRP OXT O N N 529 TRP H H N N 530 TRP H2 H N N 531 TRP HA H N N 532 TRP HB2 H N N 533 TRP HB3 H N N 534 TRP HD1 H N N 535 TRP HE1 H N N 536 TRP HE3 H N N 537 TRP HZ2 H N N 538 TRP HZ3 H N N 539 TRP HH2 H N N 540 TRP HXT H N N 541 TYR N N N N 542 TYR CA C N S 543 TYR C C N N 544 TYR O O N N 545 TYR CB C N N 546 TYR CG C Y N 547 TYR CD1 C Y N 548 TYR CD2 C Y N 549 TYR CE1 C Y N 550 TYR CE2 C Y N 551 TYR CZ C Y N 552 TYR OH O N N 553 TYR OXT O N N 554 TYR H H N N 555 TYR H2 H N N 556 TYR HA H N N 557 TYR HB2 H N N 558 TYR HB3 H N N 559 TYR HD1 H N N 560 TYR HD2 H N N 561 TYR HE1 H N N 562 TYR HE2 H N N 563 TYR HH H N N 564 TYR HXT H N N 565 VAL N N N N 566 VAL CA C N S 567 VAL C C N N 568 VAL O O N N 569 VAL CB C N N 570 VAL CG1 C N N 571 VAL CG2 C N N 572 VAL OXT O N N 573 VAL H H N N 574 VAL H2 H N N 575 VAL HA H N N 576 VAL HB H N N 577 VAL HG11 H N N 578 VAL HG12 H N N 579 VAL HG13 H N N 580 VAL HG21 H N N 581 VAL HG22 H N N 582 VAL HG23 H N N 583 VAL HXT H N N 584 ZN ZN ZN N N 585 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 D5M "O5'" "C5'" sing N N 83 D5M "O5'" P sing N N 84 D5M "C5'" "C4'" sing N N 85 D5M "C5'" "H5'1" sing N N 86 D5M "C5'" "H5'2" sing N N 87 D5M "C4'" "O4'" sing N N 88 D5M "C4'" "C3'" sing N N 89 D5M "C4'" "H4'" sing N N 90 D5M "O4'" "C1'" sing N N 91 D5M "C3'" "O3'" sing N N 92 D5M "C3'" "C2'" sing N N 93 D5M "C3'" H1 sing N N 94 D5M "O3'" "H3'" sing N N 95 D5M "C2'" "C1'" sing N N 96 D5M "C2'" "H2'1" sing N N 97 D5M "C2'" "H2'2" sing N N 98 D5M "C1'" N9 sing N N 99 D5M "C1'" "H1'" sing N N 100 D5M N9 C8 sing Y N 101 D5M N9 C4 sing Y N 102 D5M C8 N7 doub Y N 103 D5M C8 H8 sing N N 104 D5M N7 C5 sing Y N 105 D5M C5 C6 sing Y N 106 D5M C5 C4 doub Y N 107 D5M C6 N6 sing N N 108 D5M C6 N1 doub Y N 109 D5M N6 HN61 sing N N 110 D5M N6 HN62 sing N N 111 D5M N1 C2 sing Y N 112 D5M C2 N3 doub Y N 113 D5M C2 H2 sing N N 114 D5M N3 C4 sing Y N 115 D5M P O1P doub N N 116 D5M P O3P sing N N 117 D5M P O2P sing N N 118 D5M O3P H3P sing N N 119 D5M O2P H2P sing N N 120 DA OP3 P sing N N 121 DA OP3 HOP3 sing N N 122 DA P OP1 doub N N 123 DA P OP2 sing N N 124 DA P "O5'" sing N N 125 DA OP2 HOP2 sing N N 126 DA "O5'" "C5'" sing N N 127 DA "C5'" "C4'" sing N N 128 DA "C5'" "H5'" sing N N 129 DA "C5'" "H5''" sing N N 130 DA "C4'" "O4'" sing N N 131 DA "C4'" "C3'" sing N N 132 DA "C4'" "H4'" sing N N 133 DA "O4'" "C1'" sing N N 134 DA "C3'" "O3'" sing N N 135 DA "C3'" "C2'" sing N N 136 DA "C3'" "H3'" sing N N 137 DA "O3'" "HO3'" sing N N 138 DA "C2'" "C1'" sing N N 139 DA "C2'" "H2'" sing N N 140 DA "C2'" "H2''" sing N N 141 DA "C1'" N9 sing N N 142 DA "C1'" "H1'" sing N N 143 DA N9 C8 sing Y N 144 DA N9 C4 sing Y N 145 DA C8 N7 doub Y N 146 DA C8 H8 sing N N 147 DA N7 C5 sing Y N 148 DA C5 C6 sing Y N 149 DA C5 C4 doub Y N 150 DA C6 N6 sing N N 151 DA C6 N1 doub Y N 152 DA N6 H61 sing N N 153 DA N6 H62 sing N N 154 DA N1 C2 sing Y N 155 DA C2 N3 doub Y N 156 DA C2 H2 sing N N 157 DA N3 C4 sing Y N 158 DC OP3 P sing N N 159 DC OP3 HOP3 sing N N 160 DC P OP1 doub N N 161 DC P OP2 sing N N 162 DC P "O5'" sing N N 163 DC OP2 HOP2 sing N N 164 DC "O5'" "C5'" sing N N 165 DC "C5'" "C4'" sing N N 166 DC "C5'" "H5'" sing N N 167 DC "C5'" "H5''" sing N N 168 DC "C4'" "O4'" sing N N 169 DC "C4'" "C3'" sing N N 170 DC "C4'" "H4'" sing N N 171 DC "O4'" "C1'" sing N N 172 DC "C3'" "O3'" sing N N 173 DC "C3'" "C2'" sing N N 174 DC "C3'" "H3'" sing N N 175 DC "O3'" "HO3'" sing N N 176 DC "C2'" "C1'" sing N N 177 DC "C2'" "H2'" sing N N 178 DC "C2'" "H2''" sing N N 179 DC "C1'" N1 sing N N 180 DC "C1'" "H1'" sing N N 181 DC N1 C2 sing N N 182 DC N1 C6 sing N N 183 DC C2 O2 doub N N 184 DC C2 N3 sing N N 185 DC N3 C4 doub N N 186 DC C4 N4 sing N N 187 DC C4 C5 sing N N 188 DC N4 H41 sing N N 189 DC N4 H42 sing N N 190 DC C5 C6 doub N N 191 DC C5 H5 sing N N 192 DC C6 H6 sing N N 193 DG OP3 P sing N N 194 DG OP3 HOP3 sing N N 195 DG P OP1 doub N N 196 DG P OP2 sing N N 197 DG P "O5'" sing N N 198 DG OP2 HOP2 sing N N 199 DG "O5'" "C5'" sing N N 200 DG "C5'" "C4'" sing N N 201 DG "C5'" "H5'" sing N N 202 DG "C5'" "H5''" sing N N 203 DG "C4'" "O4'" sing N N 204 DG "C4'" "C3'" sing N N 205 DG "C4'" "H4'" sing N N 206 DG "O4'" "C1'" sing N N 207 DG "C3'" "O3'" sing N N 208 DG "C3'" "C2'" sing N N 209 DG "C3'" "H3'" sing N N 210 DG "O3'" "HO3'" sing N N 211 DG "C2'" "C1'" sing N N 212 DG "C2'" "H2'" sing N N 213 DG "C2'" "H2''" sing N N 214 DG "C1'" N9 sing N N 215 DG "C1'" "H1'" sing N N 216 DG N9 C8 sing Y N 217 DG N9 C4 sing Y N 218 DG C8 N7 doub Y N 219 DG C8 H8 sing N N 220 DG N7 C5 sing Y N 221 DG C5 C6 sing N N 222 DG C5 C4 doub Y N 223 DG C6 O6 doub N N 224 DG C6 N1 sing N N 225 DG N1 C2 sing N N 226 DG N1 H1 sing N N 227 DG C2 N2 sing N N 228 DG C2 N3 doub N N 229 DG N2 H21 sing N N 230 DG N2 H22 sing N N 231 DG N3 C4 sing N N 232 DT OP3 P sing N N 233 DT OP3 HOP3 sing N N 234 DT P OP1 doub N N 235 DT P OP2 sing N N 236 DT P "O5'" sing N N 237 DT OP2 HOP2 sing N N 238 DT "O5'" "C5'" sing N N 239 DT "C5'" "C4'" sing N N 240 DT "C5'" "H5'" sing N N 241 DT "C5'" "H5''" sing N N 242 DT "C4'" "O4'" sing N N 243 DT "C4'" "C3'" sing N N 244 DT "C4'" "H4'" sing N N 245 DT "O4'" "C1'" sing N N 246 DT "C3'" "O3'" sing N N 247 DT "C3'" "C2'" sing N N 248 DT "C3'" "H3'" sing N N 249 DT "O3'" "HO3'" sing N N 250 DT "C2'" "C1'" sing N N 251 DT "C2'" "H2'" sing N N 252 DT "C2'" "H2''" sing N N 253 DT "C1'" N1 sing N N 254 DT "C1'" "H1'" sing N N 255 DT N1 C2 sing N N 256 DT N1 C6 sing N N 257 DT C2 O2 doub N N 258 DT C2 N3 sing N N 259 DT N3 C4 sing N N 260 DT N3 H3 sing N N 261 DT C4 O4 doub N N 262 DT C4 C5 sing N N 263 DT C5 C7 sing N N 264 DT C5 C6 doub N N 265 DT C7 H71 sing N N 266 DT C7 H72 sing N N 267 DT C7 H73 sing N N 268 DT C6 H6 sing N N 269 GLN N CA sing N N 270 GLN N H sing N N 271 GLN N H2 sing N N 272 GLN CA C sing N N 273 GLN CA CB sing N N 274 GLN CA HA sing N N 275 GLN C O doub N N 276 GLN C OXT sing N N 277 GLN CB CG sing N N 278 GLN CB HB2 sing N N 279 GLN CB HB3 sing N N 280 GLN CG CD sing N N 281 GLN CG HG2 sing N N 282 GLN CG HG3 sing N N 283 GLN CD OE1 doub N N 284 GLN CD NE2 sing N N 285 GLN NE2 HE21 sing N N 286 GLN NE2 HE22 sing N N 287 GLN OXT HXT sing N N 288 GLU N CA sing N N 289 GLU N H sing N N 290 GLU N H2 sing N N 291 GLU CA C sing N N 292 GLU CA CB sing N N 293 GLU CA HA sing N N 294 GLU C O doub N N 295 GLU C OXT sing N N 296 GLU CB CG sing N N 297 GLU CB HB2 sing N N 298 GLU CB HB3 sing N N 299 GLU CG CD sing N N 300 GLU CG HG2 sing N N 301 GLU CG HG3 sing N N 302 GLU CD OE1 doub N N 303 GLU CD OE2 sing N N 304 GLU OE2 HE2 sing N N 305 GLU OXT HXT sing N N 306 GLY N CA sing N N 307 GLY N H sing N N 308 GLY N H2 sing N N 309 GLY CA C sing N N 310 GLY CA HA2 sing N N 311 GLY CA HA3 sing N N 312 GLY C O doub N N 313 GLY C OXT sing N N 314 GLY OXT HXT sing N N 315 GOL C1 O1 sing N N 316 GOL C1 C2 sing N N 317 GOL C1 H11 sing N N 318 GOL C1 H12 sing N N 319 GOL O1 HO1 sing N N 320 GOL C2 O2 sing N N 321 GOL C2 C3 sing N N 322 GOL C2 H2 sing N N 323 GOL O2 HO2 sing N N 324 GOL C3 O3 sing N N 325 GOL C3 H31 sing N N 326 GOL C3 H32 sing N N 327 GOL O3 HO3 sing N N 328 HIS N CA sing N N 329 HIS N H sing N N 330 HIS N H2 sing N N 331 HIS CA C sing N N 332 HIS CA CB sing N N 333 HIS CA HA sing N N 334 HIS C O doub N N 335 HIS C OXT sing N N 336 HIS CB CG sing N N 337 HIS CB HB2 sing N N 338 HIS CB HB3 sing N N 339 HIS CG ND1 sing Y N 340 HIS CG CD2 doub Y N 341 HIS ND1 CE1 doub Y N 342 HIS ND1 HD1 sing N N 343 HIS CD2 NE2 sing Y N 344 HIS CD2 HD2 sing N N 345 HIS CE1 NE2 sing Y N 346 HIS CE1 HE1 sing N N 347 HIS NE2 HE2 sing N N 348 HIS OXT HXT sing N N 349 HOH O H1 sing N N 350 HOH O H2 sing N N 351 ILE N CA sing N N 352 ILE N H sing N N 353 ILE N H2 sing N N 354 ILE CA C sing N N 355 ILE CA CB sing N N 356 ILE CA HA sing N N 357 ILE C O doub N N 358 ILE C OXT sing N N 359 ILE CB CG1 sing N N 360 ILE CB CG2 sing N N 361 ILE CB HB sing N N 362 ILE CG1 CD1 sing N N 363 ILE CG1 HG12 sing N N 364 ILE CG1 HG13 sing N N 365 ILE CG2 HG21 sing N N 366 ILE CG2 HG22 sing N N 367 ILE CG2 HG23 sing N N 368 ILE CD1 HD11 sing N N 369 ILE CD1 HD12 sing N N 370 ILE CD1 HD13 sing N N 371 ILE OXT HXT sing N N 372 LEU N CA sing N N 373 LEU N H sing N N 374 LEU N H2 sing N N 375 LEU CA C sing N N 376 LEU CA CB sing N N 377 LEU CA HA sing N N 378 LEU C O doub N N 379 LEU C OXT sing N N 380 LEU CB CG sing N N 381 LEU CB HB2 sing N N 382 LEU CB HB3 sing N N 383 LEU CG CD1 sing N N 384 LEU CG CD2 sing N N 385 LEU CG HG sing N N 386 LEU CD1 HD11 sing N N 387 LEU CD1 HD12 sing N N 388 LEU CD1 HD13 sing N N 389 LEU CD2 HD21 sing N N 390 LEU CD2 HD22 sing N N 391 LEU CD2 HD23 sing N N 392 LEU OXT HXT sing N N 393 LYS N CA sing N N 394 LYS N H sing N N 395 LYS N H2 sing N N 396 LYS CA C sing N N 397 LYS CA CB sing N N 398 LYS CA HA sing N N 399 LYS C O doub N N 400 LYS C OXT sing N N 401 LYS CB CG sing N N 402 LYS CB HB2 sing N N 403 LYS CB HB3 sing N N 404 LYS CG CD sing N N 405 LYS CG HG2 sing N N 406 LYS CG HG3 sing N N 407 LYS CD CE sing N N 408 LYS CD HD2 sing N N 409 LYS CD HD3 sing N N 410 LYS CE NZ sing N N 411 LYS CE HE2 sing N N 412 LYS CE HE3 sing N N 413 LYS NZ HZ1 sing N N 414 LYS NZ HZ2 sing N N 415 LYS NZ HZ3 sing N N 416 LYS OXT HXT sing N N 417 MET N CA sing N N 418 MET N H sing N N 419 MET N H2 sing N N 420 MET CA C sing N N 421 MET CA CB sing N N 422 MET CA HA sing N N 423 MET C O doub N N 424 MET C OXT sing N N 425 MET CB CG sing N N 426 MET CB HB2 sing N N 427 MET CB HB3 sing N N 428 MET CG SD sing N N 429 MET CG HG2 sing N N 430 MET CG HG3 sing N N 431 MET SD CE sing N N 432 MET CE HE1 sing N N 433 MET CE HE2 sing N N 434 MET CE HE3 sing N N 435 MET OXT HXT sing N N 436 PHE N CA sing N N 437 PHE N H sing N N 438 PHE N H2 sing N N 439 PHE CA C sing N N 440 PHE CA CB sing N N 441 PHE CA HA sing N N 442 PHE C O doub N N 443 PHE C OXT sing N N 444 PHE CB CG sing N N 445 PHE CB HB2 sing N N 446 PHE CB HB3 sing N N 447 PHE CG CD1 doub Y N 448 PHE CG CD2 sing Y N 449 PHE CD1 CE1 sing Y N 450 PHE CD1 HD1 sing N N 451 PHE CD2 CE2 doub Y N 452 PHE CD2 HD2 sing N N 453 PHE CE1 CZ doub Y N 454 PHE CE1 HE1 sing N N 455 PHE CE2 CZ sing Y N 456 PHE CE2 HE2 sing N N 457 PHE CZ HZ sing N N 458 PHE OXT HXT sing N N 459 PRO N CA sing N N 460 PRO N CD sing N N 461 PRO N H sing N N 462 PRO CA C sing N N 463 PRO CA CB sing N N 464 PRO CA HA sing N N 465 PRO C O doub N N 466 PRO C OXT sing N N 467 PRO CB CG sing N N 468 PRO CB HB2 sing N N 469 PRO CB HB3 sing N N 470 PRO CG CD sing N N 471 PRO CG HG2 sing N N 472 PRO CG HG3 sing N N 473 PRO CD HD2 sing N N 474 PRO CD HD3 sing N N 475 PRO OXT HXT sing N N 476 SER N CA sing N N 477 SER N H sing N N 478 SER N H2 sing N N 479 SER CA C sing N N 480 SER CA CB sing N N 481 SER CA HA sing N N 482 SER C O doub N N 483 SER C OXT sing N N 484 SER CB OG sing N N 485 SER CB HB2 sing N N 486 SER CB HB3 sing N N 487 SER OG HG sing N N 488 SER OXT HXT sing N N 489 THR N CA sing N N 490 THR N H sing N N 491 THR N H2 sing N N 492 THR CA C sing N N 493 THR CA CB sing N N 494 THR CA HA sing N N 495 THR C O doub N N 496 THR C OXT sing N N 497 THR CB OG1 sing N N 498 THR CB CG2 sing N N 499 THR CB HB sing N N 500 THR OG1 HG1 sing N N 501 THR CG2 HG21 sing N N 502 THR CG2 HG22 sing N N 503 THR CG2 HG23 sing N N 504 THR OXT HXT sing N N 505 TRP N CA sing N N 506 TRP N H sing N N 507 TRP N H2 sing N N 508 TRP CA C sing N N 509 TRP CA CB sing N N 510 TRP CA HA sing N N 511 TRP C O doub N N 512 TRP C OXT sing N N 513 TRP CB CG sing N N 514 TRP CB HB2 sing N N 515 TRP CB HB3 sing N N 516 TRP CG CD1 doub Y N 517 TRP CG CD2 sing Y N 518 TRP CD1 NE1 sing Y N 519 TRP CD1 HD1 sing N N 520 TRP CD2 CE2 doub Y N 521 TRP CD2 CE3 sing Y N 522 TRP NE1 CE2 sing Y N 523 TRP NE1 HE1 sing N N 524 TRP CE2 CZ2 sing Y N 525 TRP CE3 CZ3 doub Y N 526 TRP CE3 HE3 sing N N 527 TRP CZ2 CH2 doub Y N 528 TRP CZ2 HZ2 sing N N 529 TRP CZ3 CH2 sing Y N 530 TRP CZ3 HZ3 sing N N 531 TRP CH2 HH2 sing N N 532 TRP OXT HXT sing N N 533 TYR N CA sing N N 534 TYR N H sing N N 535 TYR N H2 sing N N 536 TYR CA C sing N N 537 TYR CA CB sing N N 538 TYR CA HA sing N N 539 TYR C O doub N N 540 TYR C OXT sing N N 541 TYR CB CG sing N N 542 TYR CB HB2 sing N N 543 TYR CB HB3 sing N N 544 TYR CG CD1 doub Y N 545 TYR CG CD2 sing Y N 546 TYR CD1 CE1 sing Y N 547 TYR CD1 HD1 sing N N 548 TYR CD2 CE2 doub Y N 549 TYR CD2 HD2 sing N N 550 TYR CE1 CZ doub Y N 551 TYR CE1 HE1 sing N N 552 TYR CE2 CZ sing Y N 553 TYR CE2 HE2 sing N N 554 TYR CZ OH sing N N 555 TYR OH HH sing N N 556 TYR OXT HXT sing N N 557 VAL N CA sing N N 558 VAL N H sing N N 559 VAL N H2 sing N N 560 VAL CA C sing N N 561 VAL CA CB sing N N 562 VAL CA HA sing N N 563 VAL C O doub N N 564 VAL C OXT sing N N 565 VAL CB CG1 sing N N 566 VAL CB CG2 sing N N 567 VAL CB HB sing N N 568 VAL CG1 HG11 sing N N 569 VAL CG1 HG12 sing N N 570 VAL CG1 HG13 sing N N 571 VAL CG2 HG21 sing N N 572 VAL CG2 HG22 sing N N 573 VAL CG2 HG23 sing N N 574 VAL OXT HXT sing N N 575 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 6JNL 'double helix' 6JNL 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DT 2 1_555 C DA 11 1_555 0.032 -0.204 -0.173 -4.229 -10.908 0.593 1 D_DT2:DA11_C D 2 ? C 11 ? 20 1 1 B DC 3 1_555 C DG 10 1_555 0.117 -0.140 -0.014 -8.460 -9.915 1.511 2 D_DC3:DG10_C D 3 ? C 10 ? 19 1 1 B DT 4 1_555 C DA 9 1_555 0.004 -0.108 0.319 -5.534 -10.387 -6.002 3 D_DT4:DA9_C D 4 ? C 9 ? 20 1 1 B DC 5 1_555 C DG 8 1_555 0.221 -0.144 0.321 -4.033 -11.967 1.228 4 D_DC5:DG8_C D 5 ? C 8 ? 19 1 1 B DT 6 1_555 C DA 7 1_555 -0.097 -0.183 0.203 -0.379 -7.630 0.042 5 D_DT6:DA7_C D 6 ? C 7 ? 20 1 1 B DG 7 1_555 C DC 6 1_555 0.081 -0.097 0.107 1.422 -14.204 -0.723 6 D_DG7:DC6_C D 7 ? C 6 ? 19 1 1 B DT 8 1_555 C DA 5 1_555 -0.058 -0.200 0.414 -0.899 -13.720 -4.226 7 D_DT8:DA5_C D 8 ? C 5 ? 20 1 1 B DT 9 1_555 C DA 4 1_555 -0.023 -0.165 0.180 -4.805 -15.593 -1.286 8 D_DT9:DA4_C D 9 ? C 4 ? 20 1 1 B DT 10 1_555 C DA 3 1_555 0.237 -0.042 0.025 -8.572 -14.201 -0.864 9 D_DT10:DA3_C D 10 ? C 3 ? 20 1 1 B DT 11 1_555 C DA 2 1_555 -0.097 -0.085 -0.095 -7.357 -10.389 -1.135 10 D_DT11:DA2_C D 11 ? C 2 ? 20 1 1 B DG 12 1_555 C DC 1 1_555 -0.053 -0.067 0.159 4.137 -11.358 -1.297 11 D_DG12:DC1_C D 12 ? C 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DT 2 1_555 C DA 11 1_555 B DC 3 1_555 C DG 10 1_555 1.477 0.155 3.298 3.129 -1.385 38.994 0.401 -1.821 3.394 -2.071 -4.677 39.138 1 DD_DT2DC3:DG10DA11_CC D 2 ? C 11 ? D 3 ? C 10 ? 1 B DC 3 1_555 C DG 10 1_555 B DT 4 1_555 C DA 9 1_555 -1.233 -0.239 3.480 -1.542 2.905 30.486 -1.065 2.006 3.499 5.504 2.922 30.658 2 DD_DC3DT4:DA9DG10_CC D 3 ? C 10 ? D 4 ? C 9 ? 1 B DT 4 1_555 C DA 9 1_555 B DC 5 1_555 C DG 8 1_555 -0.147 -0.390 3.171 -2.448 6.215 35.962 -1.445 -0.090 3.067 9.961 3.923 36.557 3 DD_DT4DC5:DG8DA9_CC D 4 ? C 9 ? D 5 ? C 8 ? 1 B DC 5 1_555 C DG 8 1_555 B DT 6 1_555 C DA 7 1_555 -0.067 -0.300 3.206 2.045 3.994 25.814 -1.713 0.687 3.110 8.854 -4.534 26.194 4 DD_DC5DT6:DA7DG8_CC D 5 ? C 8 ? D 6 ? C 7 ? 1 B DT 6 1_555 C DA 7 1_555 B DG 7 1_555 C DC 6 1_555 -0.736 1.005 3.315 -4.783 4.076 41.213 0.965 0.509 3.455 5.750 6.747 41.669 5 DD_DT6DG7:DC6DA7_CC D 6 ? C 7 ? D 7 ? C 6 ? 1 B DG 7 1_555 C DC 6 1_555 B DT 8 1_555 C DA 5 1_555 -0.154 -0.656 3.368 -3.704 -4.061 35.282 -0.457 -0.307 3.418 -6.650 6.066 35.695 6 DD_DG7DT8:DA5DC6_CC D 7 ? C 6 ? D 8 ? C 5 ? 1 B DT 8 1_555 C DA 5 1_555 B DT 9 1_555 C DA 4 1_555 -0.398 -0.668 3.252 0.394 -5.389 36.088 -0.315 0.690 3.309 -8.638 -0.632 36.477 7 DD_DT8DT9:DA4DA5_CC D 8 ? C 5 ? D 9 ? C 4 ? 1 B DT 9 1_555 C DA 4 1_555 B DT 10 1_555 C DA 3 1_555 -0.167 -0.334 3.225 -0.430 -1.907 39.318 -0.272 0.198 3.239 -2.832 0.638 39.365 8 DD_DT9DT10:DA3DA4_CC D 9 ? C 4 ? D 10 ? C 3 ? 1 B DT 10 1_555 C DA 3 1_555 B DT 11 1_555 C DA 2 1_555 -0.110 -0.089 3.241 -0.827 -3.569 34.795 0.386 0.060 3.236 -5.948 1.379 34.982 9 DD_DT10DT11:DA2DA3_CC D 10 ? C 3 ? D 11 ? C 2 ? 1 B DT 11 1_555 C DA 2 1_555 B DG 12 1_555 C DC 1 1_555 0.200 0.375 3.112 -5.583 7.401 36.008 -0.359 -1.029 3.063 11.735 8.852 37.144 10 DD_DT11DG12:DC1DA2_CC D 11 ? C 2 ? D 12 ? C 1 ? # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4R2S _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 6JNL _atom_sites.fract_transf_matrix[1][1] 0.011216 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011216 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013774 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P S ZN # loop_