HEADER MEMBRANE PROTEIN 19-MAR-19 6JO0 TITLE CRYSTAL STRUCTURE OF THE DTS-MOTIF RHODOPSIN FROM PHAEOCYSTIS GLOBOSA TITLE 2 VIRUS 12T COMPND MOL_ID: 1; COMPND 2 MOLECULE: VIRRDTS; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PHAEOCYSTIS GLOBOSA VIRUS 12T; SOURCE 3 ORGANISM_TAXID: 755273; SOURCE 4 GENE: PGAG_00290; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MICROBIAL TYPE RHODOPSIN FROM VIRUS, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.HOSAKA,T.KIMURA-SOMEYA,M.SHIROUZU REVDAT 5 22-NOV-23 6JO0 1 REMARK REVDAT 4 23-OCT-19 6JO0 1 JRNL REVDAT 3 16-OCT-19 6JO0 1 TITLE JRNL REVDAT 2 09-OCT-19 6JO0 1 JRNL REVDAT 1 02-OCT-19 6JO0 0 JRNL AUTH D.M.NEEDHAM,S.YOSHIZAWA,T.HOSAKA,C.POIRIER,C.J.CHOI, JRNL AUTH 2 E.HEHENBERGER,N.A.T.IRWIN,S.WILKEN,C.M.YUNG,C.BACHY, JRNL AUTH 3 R.KURIHARA,Y.NAKAJIMA,K.KOJIMA,T.KIMURA-SOMEYA,G.LEONARD, JRNL AUTH 4 R.R.MALMSTROM,D.R.MENDE,D.K.OLSON,Y.SUDO,S.SUDEK, JRNL AUTH 5 T.A.RICHARDS,E.F.DELONG,P.J.KEELING,A.E.SANTORO,M.SHIROUZU, JRNL AUTH 6 W.IWASAKI,A.Z.WORDEN JRNL TITL A DISTINCT LINEAGE OF GIANT VIRUSES BRINGS A RHODOPSIN JRNL TITL 2 PHOTOSYSTEM TO UNICELLULAR MARINE PREDATORS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 116 20574 2019 JRNL REFN ESSN 1091-6490 JRNL PMID 31548428 JRNL DOI 10.1073/PNAS.1907517116 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.16 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 37586 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.940 REMARK 3 FREE R VALUE TEST SET COUNT : 1855 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.1736 - 3.8813 1.00 2959 139 0.2134 0.2215 REMARK 3 2 3.8813 - 3.0810 1.00 2800 153 0.1866 0.2115 REMARK 3 3 3.0810 - 2.6916 1.00 2790 135 0.1707 0.1723 REMARK 3 4 2.6916 - 2.4455 1.00 2742 144 0.1546 0.1738 REMARK 3 5 2.4455 - 2.2703 1.00 2732 153 0.1552 0.1773 REMARK 3 6 2.2703 - 2.1364 1.00 2720 161 0.1589 0.1909 REMARK 3 7 2.1364 - 2.0294 1.00 2754 126 0.1659 0.1857 REMARK 3 8 2.0294 - 1.9411 1.00 2733 119 0.1808 0.1945 REMARK 3 9 1.9411 - 1.8664 1.00 2703 143 0.2008 0.2122 REMARK 3 10 1.8664 - 1.8019 1.00 2714 148 0.2406 0.2573 REMARK 3 11 1.8019 - 1.7456 1.00 2715 124 0.2603 0.3212 REMARK 3 12 1.7456 - 1.6957 1.00 2690 159 0.2793 0.3248 REMARK 3 13 1.6957 - 1.6511 0.99 2679 151 0.3035 0.3081 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.830 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.21 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 34 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.8776 -30.7565 -28.7905 REMARK 3 T TENSOR REMARK 3 T11: 0.2062 T22: 0.2080 REMARK 3 T33: 0.1487 T12: 0.0127 REMARK 3 T13: -0.0205 T23: -0.0272 REMARK 3 L TENSOR REMARK 3 L11: 2.2885 L22: 2.7919 REMARK 3 L33: 4.0041 L12: 1.1419 REMARK 3 L13: -0.3327 L23: -2.0019 REMARK 3 S TENSOR REMARK 3 S11: -0.0616 S12: 0.0340 S13: -0.0449 REMARK 3 S21: -0.7618 S22: -0.0607 S23: 0.1532 REMARK 3 S31: 0.4072 S32: -0.0334 S33: 0.0271 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 35 THROUGH 63 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.5451 -25.5030 -27.9713 REMARK 3 T TENSOR REMARK 3 T11: 0.2790 T22: 0.2496 REMARK 3 T33: 0.1975 T12: 0.0011 REMARK 3 T13: -0.0102 T23: -0.0025 REMARK 3 L TENSOR REMARK 3 L11: 1.4400 L22: 2.2128 REMARK 3 L33: 1.7278 L12: 1.4394 REMARK 3 L13: 0.1662 L23: -0.2260 REMARK 3 S TENSOR REMARK 3 S11: -0.0201 S12: 0.0972 S13: 0.0752 REMARK 3 S21: -0.0314 S22: 0.1074 S23: 0.1426 REMARK 3 S31: -0.0814 S32: -0.0317 S33: -0.0397 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 64 THROUGH 101 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.8217 -31.8645 -19.1714 REMARK 3 T TENSOR REMARK 3 T11: 0.2605 T22: 0.2504 REMARK 3 T33: 0.1687 T12: 0.0183 REMARK 3 T13: -0.0018 T23: -0.0020 REMARK 3 L TENSOR REMARK 3 L11: 1.2926 L22: 4.6194 REMARK 3 L33: 1.9880 L12: 0.7684 REMARK 3 L13: 0.3287 L23: -0.2390 REMARK 3 S TENSOR REMARK 3 S11: 0.0651 S12: 0.0431 S13: -0.1222 REMARK 3 S21: 0.1719 S22: -0.0229 S23: 0.0179 REMARK 3 S31: 0.0992 S32: 0.1029 S33: -0.0302 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 102 THROUGH 167 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.4961 -22.4905 -10.5266 REMARK 3 T TENSOR REMARK 3 T11: 0.3670 T22: 0.2618 REMARK 3 T33: 0.2045 T12: 0.0074 REMARK 3 T13: -0.0520 T23: -0.0299 REMARK 3 L TENSOR REMARK 3 L11: 0.8070 L22: 2.3425 REMARK 3 L33: 2.0205 L12: 0.1454 REMARK 3 L13: -0.1585 L23: -1.5503 REMARK 3 S TENSOR REMARK 3 S11: 0.0228 S12: -0.1098 S13: 0.0875 REMARK 3 S21: 0.2910 S22: -0.0863 S23: -0.2281 REMARK 3 S31: -0.1949 S32: 0.0912 S33: 0.0395 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 168 THROUGH 225 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.4177 -25.6586 -14.9546 REMARK 3 T TENSOR REMARK 3 T11: 0.2567 T22: 0.2537 REMARK 3 T33: 0.1888 T12: 0.0163 REMARK 3 T13: 0.0256 T23: -0.0098 REMARK 3 L TENSOR REMARK 3 L11: 1.5487 L22: 2.6468 REMARK 3 L33: 2.4151 L12: -0.6969 REMARK 3 L13: 0.7552 L23: -0.3821 REMARK 3 S TENSOR REMARK 3 S11: -0.0435 S12: -0.1339 S13: 0.1446 REMARK 3 S21: 0.2044 S22: 0.0549 S23: 0.2284 REMARK 3 S31: -0.0966 S32: -0.2322 S33: -0.0215 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6JO0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-MAR-19. REMARK 100 THE DEPOSITION ID IS D_1300011393. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL32XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37658 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 45.190 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 1.62800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5B2N REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NA-CITRATE (PH 5.5), 150 MM NA REMARK 280 -PHOSPHATE, 25% PEG 600, LIPIDIC CUBIC PHASE, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,-Y,-Z+1/2 REMARK 290 4555 -X+1/2,-Y,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 22.59700 REMARK 290 SMTRY2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.51850 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 22.59700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 58.51850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -6 REMARK 465 SER A -5 REMARK 465 SER A -4 REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 SER A -1 REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 2 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 406 O HOH A 412 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 211 -61.00 -98.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 OLB A 319 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue RET A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OCT A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OCT A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OCT A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OCT A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OCT A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OCT A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEX A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEX A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEX A 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEX A 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEX A 313 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue D10 A 314 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue D12 A 315 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DD9 A 316 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DD9 A 317 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DD9 A 318 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLB A 319 DBREF 6JO0 A 1 225 UNP G8DI69 G8DI69_9VIRU 1 225 SEQADV 6JO0 GLY A -6 UNP G8DI69 EXPRESSION TAG SEQADV 6JO0 SER A -5 UNP G8DI69 EXPRESSION TAG SEQADV 6JO0 SER A -4 UNP G8DI69 EXPRESSION TAG SEQADV 6JO0 GLY A -3 UNP G8DI69 EXPRESSION TAG SEQADV 6JO0 SER A -2 UNP G8DI69 EXPRESSION TAG SEQADV 6JO0 SER A -1 UNP G8DI69 EXPRESSION TAG SEQADV 6JO0 GLY A 0 UNP G8DI69 EXPRESSION TAG SEQRES 1 A 232 GLY SER SER GLY SER SER GLY MET GLU ASN SER PHE ILE SEQRES 2 A 232 VAL LYS ASN THR MET ILE PHE SER PHE LEU ILE GLN ILE SEQRES 3 A 232 ILE THR LEU ILE ILE GLY ILE PHE ALA GLN PHE ILE LYS SEQRES 4 A 232 VAL PRO ARG HIS LYS TYR ILE LEU LYS ASP ALA LEU LEU SEQRES 5 A 232 LEU GLU ASN ILE VAL GLN PHE ILE GLU ALA ILE PHE TYR SEQRES 6 A 232 LEU TRP PHE ILE TYR PHE TYR LYS GLU ASN VAL ASP LYS SEQRES 7 A 232 ILE ASP ILE ALA LYS TYR ARG TYR TYR ASP TRP PHE LEU SEQRES 8 A 232 THR THR PRO THR MET ILE LEU SER VAL ILE ILE TYR PHE SEQRES 9 A 232 HIS TYR ASN ASN SER SER LYS LYS ILE TYR TYR ASN MET SEQRES 10 A 232 ILE THR PHE PHE LYS GLN ASP PHE ARG LYS ILE LEU GLU SEQRES 11 A 232 LEU TRP PHE TYR ASN PHE ASN MET LEU ILE ILE GLY TYR SEQRES 12 A 232 LEU GLN GLU ILE ASN ILE ILE SER ILE LEU LEU SER THR SEQRES 13 A 232 LEU ILE GLY PHE TYR PHE PHE GLY LEU LEU PHE TYR LYS SEQRES 14 A 232 MET PHE LYS TYR TYR VAL VAL GLN ASN LYS LYS ASN TYR SEQRES 15 A 232 LEU LEU PHE PHE LEU MET PHE PHE ILE TRP GLY LEU TYR SEQRES 16 A 232 GLY ILE ALA ALA LEU PHE ASN TYR LYS PHE LYS ASN ALA SEQRES 17 A 232 PHE TYR ASN ILE LEU ASP ILE PHE SER LYS ASN PHE PHE SEQRES 18 A 232 GLY LEU PHE LEU ALA TYR LEU VAL PHE THR GLY HET RET A 301 20 HET OCT A 302 8 HET OCT A 303 8 HET OCT A 304 8 HET OCT A 305 8 HET OCT A 306 8 HET OCT A 307 8 HET PO4 A 308 5 HET HEX A 309 6 HET HEX A 310 6 HET HEX A 311 6 HET HEX A 312 6 HET HEX A 313 6 HET D10 A 314 10 HET D12 A 315 12 HET DD9 A 316 9 HET DD9 A 317 9 HET DD9 A 318 9 HET OLB A 319 16 HETNAM RET RETINAL HETNAM OCT N-OCTANE HETNAM PO4 PHOSPHATE ION HETNAM HEX HEXANE HETNAM D10 DECANE HETNAM D12 DODECANE HETNAM DD9 NONANE HETNAM OLB (2S)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE FORMUL 2 RET C20 H28 O FORMUL 3 OCT 6(C8 H18) FORMUL 9 PO4 O4 P 3- FORMUL 10 HEX 5(C6 H14) FORMUL 15 D10 C10 H22 FORMUL 16 D12 C12 H26 FORMUL 17 DD9 3(C9 H20) FORMUL 20 OLB C21 H40 O4 FORMUL 21 HOH *92(H2 O) HELIX 1 AA1 GLU A 2 SER A 4 5 3 HELIX 2 AA2 PHE A 5 PHE A 30 1 26 HELIX 3 AA3 PRO A 34 HIS A 36 5 3 HELIX 4 AA4 LYS A 37 PHE A 64 1 28 HELIX 5 AA5 ILE A 74 SER A 102 1 29 HELIX 6 AA6 ASN A 109 ILE A 140 1 32 HELIX 7 AA7 SER A 144 VAL A 168 1 25 HELIX 8 AA8 ASN A 171 LYS A 173 5 3 HELIX 9 AA9 ASN A 174 ALA A 192 1 19 HELIX 10 AB1 ASN A 195 LYS A 211 1 17 HELIX 11 AB2 LYS A 211 THR A 224 1 14 LINK NZ LYS A 211 C15 RET A 301 1555 1555 1.43 SITE 1 AC1 10 TYR A 79 TRP A 82 THR A 86 MET A 131 SITE 2 AC1 10 PHE A 153 TRP A 185 TYR A 188 GLY A 189 SITE 3 AC1 10 SER A 210 LYS A 211 SITE 1 AC2 3 ASN A 9 GLN A 29 LYS A 41 SITE 1 AC3 3 TYR A 96 PHE A 217 OLB A 319 SITE 1 AC4 2 ILE A 23 THR A 88 SITE 1 AC5 1 LEU A 193 SITE 1 AC6 2 ILE A 142 SER A 144 SITE 1 AC7 2 ILE A 26 PHE A 30 SITE 1 AC8 5 ARG A 35 HIS A 36 LYS A 105 TYR A 107 SITE 2 AC8 5 HOH A 411 SITE 1 AC9 3 TYR A 161 PHE A 164 PHE A 182 SITE 1 AD1 1 TRP A 60 SITE 1 AD2 2 ASN A 130 TYR A 154 SITE 1 AD3 3 TYR A 127 TYR A 154 LEU A 158 SITE 1 AD4 1 TYR A 80 SITE 1 AD5 2 PHE A 126 PHE A 129 SITE 1 AD6 1 PHE A 213 SITE 1 AD7 2 ILE A 145 LEU A 193 SITE 1 AD8 1 ILE A 24 SITE 1 AD9 4 ILE A 72 ASP A 73 LYS A 76 ILE A 140 SITE 1 AE1 6 MET A 89 MET A 181 TRP A 185 SER A 210 SITE 2 AE1 6 PHE A 214 OCT A 303 CRYST1 45.194 57.832 117.037 90.00 90.00 90.00 P 21 2 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022127 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017291 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008544 0.00000