HEADER CHAPERONE 28-MAR-19 6JPV TITLE STRUCTURAL ANALYSIS OF AIMP2-DX2 AND HSP70 INTERACTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEAT SHOCK 70 KDA PROTEIN 1A,AMINOACYL TRNA SYNTHASE COMPND 3 COMPLEX-INTERACTING MULTIFUNCTIONAL PROTEIN 2; COMPND 4 CHAIN: A, B; COMPND 5 FRAGMENT: HSP70 SUBSTRATE BINDING DOMAIN/PEPTIDE SEQUENCES OF DX2; COMPND 6 SYNONYM: HEAT SHOCK 70 KDA PROTEIN 1,HSP70.1,MULTISYNTHASE COMPLEX COMPND 7 AUXILIARY COMPONENT P38,PROTEIN JTV-1; COMPND 8 ENGINEERED: YES; COMPND 9 OTHER_DETAILS: SF FILE CONTAINS FRIEDEL PAIRS.,SF FILE CONTAINS COMPND 10 FRIEDEL PAIRS. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HSPA1A, HSP72, HSPA1, HSX70, AIMP2, JTV1, PRO0992; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RIPL KEYWDS HSP70, AIMP2-DX2, SUBSTRATE BINDING DOMAIN, CHAPERONE EXPDTA X-RAY DIFFRACTION AUTHOR H.Y.CHO,S.Y.SON,Y.H.JEON REVDAT 5 22-NOV-23 6JPV 1 REMARK REVDAT 4 01-JAN-20 6JPV 1 JRNL REVDAT 3 18-DEC-19 6JPV 1 JRNL REVDAT 2 20-NOV-19 6JPV 1 JRNL REVDAT 1 02-OCT-19 6JPV 0 JRNL AUTH S.LIM,H.Y.CHO,D.G.KIM,Y.ROH,S.Y.SON,A.U.MUSHTAQ,M.KIM, JRNL AUTH 2 D.BHATTARAI,A.SIVARAMAN,Y.LEE,J.LEE,W.S.YANG,H.K.KIM, JRNL AUTH 3 M.H.KIM,K.LEE,Y.H.JEON,S.KIM JRNL TITL TARGETING THE INTERACTION OF AIMP2-DX2 WITH HSP70 SUPPRESSES JRNL TITL 2 CANCER DEVELOPMENT. JRNL REF NAT.CHEM.BIOL. V. 16 31 2020 JRNL REFN ESSN 1552-4469 JRNL PMID 31792442 JRNL DOI 10.1038/S41589-019-0415-2 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.08 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.358 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 3 NUMBER OF REFLECTIONS : 15894 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.692 REMARK 3 FREE R VALUE TEST SET COUNT : 2154 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.0809 - 5.2913 0.98 1778 151 0.1941 0.2225 REMARK 3 2 5.2913 - 4.2044 0.99 1792 152 0.1476 0.1892 REMARK 3 3 4.2044 - 3.6743 0.99 1802 149 0.1503 0.1855 REMARK 3 4 3.6743 - 3.3389 0.99 1822 145 0.1540 0.2183 REMARK 3 5 3.3389 - 3.0999 0.99 1799 152 0.1686 0.2145 REMARK 3 6 3.0999 - 2.9174 1.00 1814 153 0.1832 0.2553 REMARK 3 7 2.9174 - 2.7714 1.00 1828 152 0.1891 0.2314 REMARK 3 8 2.7714 - 2.6508 1.00 1820 152 0.1844 0.2810 REMARK 3 9 2.6508 - 2.5489 1.00 1813 151 0.1860 0.2937 REMARK 3 10 2.5489 - 2.4610 0.99 1797 152 0.1905 0.3112 REMARK 3 11 2.4610 - 2.3841 0.96 1745 141 0.1913 0.2993 REMARK 3 12 2.3841 - 2.3159 0.92 1675 146 0.1784 0.2699 REMARK 3 13 2.3159 - 2.2550 0.87 1584 127 0.1889 0.2572 REMARK 3 14 2.2550 - 2.2000 0.80 1457 119 0.1936 0.2331 REMARK 3 15 2.2000 - 2.1500 0.73 1323 112 0.1823 0.2639 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.258 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.915 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.93 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2398 REMARK 3 ANGLE : 0.958 3244 REMARK 3 CHIRALITY : 0.056 377 REMARK 3 PLANARITY : 0.006 430 REMARK 3 DIHEDRAL : 18.191 1501 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 19 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 463 THROUGH 492 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.4761 -9.2192 110.2892 REMARK 3 T TENSOR REMARK 3 T11: 0.0978 T22: 0.1490 REMARK 3 T33: 0.1651 T12: -0.0294 REMARK 3 T13: -0.0002 T23: 0.0185 REMARK 3 L TENSOR REMARK 3 L11: 1.7788 L22: 6.2926 REMARK 3 L33: 4.6738 L12: -0.8143 REMARK 3 L13: -1.4908 L23: 4.0800 REMARK 3 S TENSOR REMARK 3 S11: -0.0987 S12: -0.0068 S13: -0.0896 REMARK 3 S21: -0.0348 S22: -0.3026 S23: 0.7295 REMARK 3 S31: 0.1333 S32: -0.3206 S33: 0.3025 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 493 THROUGH 503 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.3422 -6.7335 106.8389 REMARK 3 T TENSOR REMARK 3 T11: 0.1949 T22: 0.6383 REMARK 3 T33: 0.4725 T12: 0.1282 REMARK 3 T13: -0.0631 T23: 0.0575 REMARK 3 L TENSOR REMARK 3 L11: 1.1735 L22: 1.0344 REMARK 3 L33: 5.5995 L12: -0.3059 REMARK 3 L13: -2.2537 L23: 1.6854 REMARK 3 S TENSOR REMARK 3 S11: 0.0724 S12: 0.0267 S13: -0.0745 REMARK 3 S21: -0.3420 S22: -0.2881 S23: 0.6706 REMARK 3 S31: -0.6610 S32: -1.4890 S33: 0.2793 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 504 THROUGH 511 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.7342 -16.0992 90.2587 REMARK 3 T TENSOR REMARK 3 T11: 0.8644 T22: 0.8993 REMARK 3 T33: 0.3830 T12: 0.2958 REMARK 3 T13: -0.0467 T23: -0.0400 REMARK 3 L TENSOR REMARK 3 L11: 3.5615 L22: 5.1991 REMARK 3 L33: 4.2133 L12: 1.0678 REMARK 3 L13: -3.5180 L23: 0.8493 REMARK 3 S TENSOR REMARK 3 S11: -0.6755 S12: 1.6975 S13: 0.1661 REMARK 3 S21: -0.6097 S22: 0.4283 S23: -0.0832 REMARK 3 S31: 0.4862 S32: -0.4541 S33: 0.4934 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 512 THROUGH 524 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.4763 -18.8295 96.9927 REMARK 3 T TENSOR REMARK 3 T11: 0.5679 T22: 0.7276 REMARK 3 T33: 0.5102 T12: 0.1376 REMARK 3 T13: 0.1645 T23: 0.0568 REMARK 3 L TENSOR REMARK 3 L11: 8.3691 L22: 4.0638 REMARK 3 L33: 4.2808 L12: 5.3055 REMARK 3 L13: 5.9329 L23: 3.9993 REMARK 3 S TENSOR REMARK 3 S11: 0.2836 S12: 1.2334 S13: 0.2995 REMARK 3 S21: -0.2394 S22: 1.0414 S23: -0.4695 REMARK 3 S31: -0.0434 S32: 1.0287 S33: -0.9543 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 525 THROUGH 537 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.5675 -11.2005 112.8520 REMARK 3 T TENSOR REMARK 3 T11: 0.2557 T22: 0.3197 REMARK 3 T33: 0.1704 T12: -0.0484 REMARK 3 T13: -0.0272 T23: -0.0309 REMARK 3 L TENSOR REMARK 3 L11: 8.7539 L22: 8.8690 REMARK 3 L33: 4.8199 L12: -5.9735 REMARK 3 L13: -5.9299 L23: 5.7274 REMARK 3 S TENSOR REMARK 3 S11: 0.0091 S12: -0.4104 S13: 0.3716 REMARK 3 S21: 0.2345 S22: 0.0909 S23: -0.5947 REMARK 3 S31: 0.5875 S32: 0.1819 S33: -0.0574 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 538 THROUGH 545 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.7823 1.9621 127.5473 REMARK 3 T TENSOR REMARK 3 T11: 0.3663 T22: 0.2924 REMARK 3 T33: 0.1654 T12: 0.0189 REMARK 3 T13: -0.0984 T23: -0.0524 REMARK 3 L TENSOR REMARK 3 L11: 8.7105 L22: 5.7012 REMARK 3 L33: 8.2238 L12: 2.5428 REMARK 3 L13: -1.2785 L23: 4.9976 REMARK 3 S TENSOR REMARK 3 S11: -0.5981 S12: -0.1851 S13: 0.5945 REMARK 3 S21: -0.7371 S22: 0.0175 S23: 0.8156 REMARK 3 S31: -0.9894 S32: 0.3989 S33: 0.4108 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 394 THROUGH 421 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.5668 11.6139 96.0100 REMARK 3 T TENSOR REMARK 3 T11: 0.1332 T22: 0.1233 REMARK 3 T33: 0.1052 T12: -0.0154 REMARK 3 T13: -0.0123 T23: 0.0023 REMARK 3 L TENSOR REMARK 3 L11: 3.4100 L22: 4.5377 REMARK 3 L33: 5.6419 L12: -3.5624 REMARK 3 L13: -2.4467 L23: 3.9989 REMARK 3 S TENSOR REMARK 3 S11: -0.0149 S12: 0.0835 S13: 0.4165 REMARK 3 S21: 0.0186 S22: 0.0606 S23: -0.1892 REMARK 3 S31: -0.0495 S32: 0.1813 S33: -0.0385 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 422 THROUGH 436 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.8654 2.3656 83.0539 REMARK 3 T TENSOR REMARK 3 T11: 0.0614 T22: 0.1179 REMARK 3 T33: 0.0936 T12: 0.0122 REMARK 3 T13: -0.0061 T23: 0.0002 REMARK 3 L TENSOR REMARK 3 L11: 1.6316 L22: 4.4240 REMARK 3 L33: 4.0128 L12: 0.1377 REMARK 3 L13: -0.0946 L23: 2.6367 REMARK 3 S TENSOR REMARK 3 S11: -0.0523 S12: 0.2115 S13: -0.1076 REMARK 3 S21: -0.0625 S22: 0.0174 S23: 0.2766 REMARK 3 S31: -0.1056 S32: 0.0651 S33: 0.0672 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 437 THROUGH 453 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.9544 2.5002 93.8569 REMARK 3 T TENSOR REMARK 3 T11: 0.0901 T22: 0.1326 REMARK 3 T33: 0.1133 T12: -0.0028 REMARK 3 T13: 0.0211 T23: 0.0166 REMARK 3 L TENSOR REMARK 3 L11: 4.6750 L22: 2.8508 REMARK 3 L33: 3.0407 L12: 3.0073 REMARK 3 L13: 2.5569 L23: 1.1587 REMARK 3 S TENSOR REMARK 3 S11: 0.1048 S12: -0.1050 S13: -0.2290 REMARK 3 S21: -0.0836 S22: -0.0767 S23: -0.2344 REMARK 3 S31: -0.1433 S32: 0.2399 S33: 0.0303 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 454 THROUGH 462 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.5417 -3.0460 94.9519 REMARK 3 T TENSOR REMARK 3 T11: 0.1080 T22: 0.1934 REMARK 3 T33: 0.1221 T12: -0.0304 REMARK 3 T13: -0.0146 T23: -0.0247 REMARK 3 L TENSOR REMARK 3 L11: 2.8917 L22: 4.3572 REMARK 3 L33: 2.1989 L12: 2.7980 REMARK 3 L13: 2.0783 L23: 2.8158 REMARK 3 S TENSOR REMARK 3 S11: -0.1118 S12: 0.0595 S13: -0.5097 REMARK 3 S21: 0.2695 S22: 0.2845 S23: -0.1709 REMARK 3 S31: 0.1165 S32: 0.2609 S33: -0.3809 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 463 THROUGH 492 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.7351 3.4516 88.3962 REMARK 3 T TENSOR REMARK 3 T11: 0.0591 T22: 0.0925 REMARK 3 T33: 0.1352 T12: -0.0222 REMARK 3 T13: 0.0054 T23: 0.0040 REMARK 3 L TENSOR REMARK 3 L11: 1.8125 L22: 1.6457 REMARK 3 L33: 3.5148 L12: -0.1270 REMARK 3 L13: -0.5803 L23: 0.3064 REMARK 3 S TENSOR REMARK 3 S11: 0.0163 S12: 0.1071 S13: 0.0037 REMARK 3 S21: 0.0370 S22: -0.1599 S23: 0.0509 REMARK 3 S31: -0.1939 S32: -0.5467 S33: 0.0254 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 493 THROUGH 511 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.9567 2.3432 98.5268 REMARK 3 T TENSOR REMARK 3 T11: 0.1545 T22: 0.1147 REMARK 3 T33: 0.1449 T12: -0.0210 REMARK 3 T13: -0.0026 T23: -0.0129 REMARK 3 L TENSOR REMARK 3 L11: 5.7453 L22: 3.0169 REMARK 3 L33: 6.7259 L12: 1.5639 REMARK 3 L13: 2.8577 L23: 0.7242 REMARK 3 S TENSOR REMARK 3 S11: 0.1412 S12: -0.2216 S13: 0.1924 REMARK 3 S21: 0.5511 S22: -0.1787 S23: -0.0945 REMARK 3 S31: 0.0136 S32: 0.3030 S33: -0.0533 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 512 THROUGH 524 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.7019 11.4509 104.4897 REMARK 3 T TENSOR REMARK 3 T11: 0.4992 T22: 0.4937 REMARK 3 T33: 0.2957 T12: -0.1234 REMARK 3 T13: -0.1404 T23: -0.0360 REMARK 3 L TENSOR REMARK 3 L11: 5.6007 L22: 5.0530 REMARK 3 L33: 7.5962 L12: -2.9370 REMARK 3 L13: -4.8075 L23: 1.3666 REMARK 3 S TENSOR REMARK 3 S11: 0.2670 S12: -1.2742 S13: 0.4180 REMARK 3 S21: 1.3713 S22: 0.0840 S23: -0.5983 REMARK 3 S31: 0.9061 S32: 0.7626 S33: -0.2735 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 525 THROUGH 536 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.6966 9.5075 87.2031 REMARK 3 T TENSOR REMARK 3 T11: 0.2550 T22: 0.4342 REMARK 3 T33: 0.2149 T12: -0.0505 REMARK 3 T13: 0.0223 T23: 0.0418 REMARK 3 L TENSOR REMARK 3 L11: 8.6324 L22: 9.3296 REMARK 3 L33: 6.6553 L12: -0.2110 REMARK 3 L13: 1.6461 L23: 3.4067 REMARK 3 S TENSOR REMARK 3 S11: 0.0348 S12: 0.5513 S13: 0.3477 REMARK 3 S21: -0.5300 S22: -0.1752 S23: -0.8793 REMARK 3 S31: 0.1067 S32: 0.8064 S33: 0.0672 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 537 THROUGH 546 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.5262 1.1153 68.8850 REMARK 3 T TENSOR REMARK 3 T11: 0.1188 T22: 0.1574 REMARK 3 T33: 0.1186 T12: 0.0676 REMARK 3 T13: -0.1693 T23: 0.0866 REMARK 3 L TENSOR REMARK 3 L11: 3.1571 L22: 5.0413 REMARK 3 L33: 3.2039 L12: 1.7139 REMARK 3 L13: -0.1189 L23: 2.0559 REMARK 3 S TENSOR REMARK 3 S11: 0.3694 S12: -0.5346 S13: 0.1559 REMARK 3 S21: 0.8512 S22: 0.2756 S23: -0.0086 REMARK 3 S31: 0.5012 S32: 0.2935 S33: 0.2854 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 394 THROUGH 408 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.7946 -15.8559 104.7664 REMARK 3 T TENSOR REMARK 3 T11: 0.0759 T22: 0.0751 REMARK 3 T33: 0.0834 T12: 0.0142 REMARK 3 T13: 0.0010 T23: 0.0020 REMARK 3 L TENSOR REMARK 3 L11: 2.6039 L22: 6.2240 REMARK 3 L33: 4.7905 L12: 0.1071 REMARK 3 L13: 0.7003 L23: 4.1342 REMARK 3 S TENSOR REMARK 3 S11: 0.0737 S12: 0.0497 S13: 0.0211 REMARK 3 S21: -0.5389 S22: -0.1146 S23: 0.1075 REMARK 3 S31: -0.1928 S32: -0.0436 S33: 0.0217 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 409 THROUGH 421 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.5410 -19.7527 106.8331 REMARK 3 T TENSOR REMARK 3 T11: 0.0914 T22: 0.1531 REMARK 3 T33: 0.1553 T12: 0.0085 REMARK 3 T13: 0.0098 T23: -0.0174 REMARK 3 L TENSOR REMARK 3 L11: 0.2338 L22: 5.1540 REMARK 3 L33: 3.3584 L12: -0.0901 REMARK 3 L13: 0.8534 L23: 0.3913 REMARK 3 S TENSOR REMARK 3 S11: 0.2427 S12: -0.2059 S13: 0.0355 REMARK 3 S21: -0.2600 S22: -0.2519 S23: 0.0306 REMARK 3 S31: 0.4999 S32: 0.1246 S33: 0.0029 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 422 THROUGH 444 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.2300 -5.6402 111.4956 REMARK 3 T TENSOR REMARK 3 T11: 0.0459 T22: 0.1068 REMARK 3 T33: 0.1347 T12: -0.0326 REMARK 3 T13: 0.0274 T23: -0.0120 REMARK 3 L TENSOR REMARK 3 L11: 1.7977 L22: 2.8225 REMARK 3 L33: 3.4310 L12: -1.0779 REMARK 3 L13: -0.7047 L23: 1.1076 REMARK 3 S TENSOR REMARK 3 S11: 0.0649 S12: -0.0316 S13: 0.0520 REMARK 3 S21: 0.0332 S22: 0.0378 S23: -0.0178 REMARK 3 S31: -0.0991 S32: 0.1432 S33: -0.1035 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 445 THROUGH 462 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.5455 -6.8095 102.9888 REMARK 3 T TENSOR REMARK 3 T11: 0.1191 T22: 0.1469 REMARK 3 T33: 0.0814 T12: 0.0043 REMARK 3 T13: 0.0368 T23: 0.0288 REMARK 3 L TENSOR REMARK 3 L11: 3.1407 L22: 2.2781 REMARK 3 L33: 3.3894 L12: -1.3743 REMARK 3 L13: -1.2668 L23: 1.0086 REMARK 3 S TENSOR REMARK 3 S11: 0.0996 S12: 0.1397 S13: 0.2004 REMARK 3 S21: -0.2031 S22: 0.0305 S23: -0.2614 REMARK 3 S31: -0.3479 S32: -0.1633 S33: -0.0700 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN 'A' AND (RESID 394 THROUGH 534 OR REMARK 3 RESID 536 THROUGH 545)) REMARK 3 SELECTION : (CHAIN 'B' AND (RESID 394 THROUGH 534 OR REMARK 3 RESID 536 THROUGH 545)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6JPV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-APR-19. REMARK 100 THE DEPOSITION ID IS D_1300011380. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-SEP-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 5C (4A) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97950 REMARK 200 MONOCHROMATOR : DCM SI (111) CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15918 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 28.080 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 7.700 REMARK 200 R MERGE (I) : 0.10360 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.2600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 8.00 REMARK 200 R MERGE FOR SHELL (I) : 0.23480 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 8.730 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.12_2829 REMARK 200 STARTING MODEL: 4WV5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG1500, SUCCINIC ACID, SODIUM REMARK 280 DIHYDROGEN PHOSPHATE, GLYCINE, PH 5.5, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.55550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.35550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.52700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 44.35550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.55550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.52700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 20.55550 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 -44.35550 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 546 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN B 505 79.59 -115.08 REMARK 500 ASP B 506 -144.65 -105.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 SUBSTRATE BINDING DOMAIN OF HSP70: S394-S537 REMARK 999 PEPTIDE FROM AIMP2-DX2: M538-G546 DBREF 6JPV A 395 537 UNP P0DMV8 HS71A_HUMAN 395 537 DBREF 6JPV A 538 546 UNP Q13155 AIMP2_HUMAN 24 32 DBREF 6JPV B 395 537 UNP P0DMV8 HS71A_HUMAN 395 537 DBREF 6JPV B 538 546 UNP Q13155 AIMP2_HUMAN 24 32 SEQADV 6JPV SER A 394 UNP P0DMV8 EXPRESSION TAG SEQADV 6JPV SER B 394 UNP P0DMV8 EXPRESSION TAG SEQRES 1 A 153 SER ASP VAL ALA PRO LEU SER LEU GLY LEU GLU THR ALA SEQRES 2 A 153 GLY GLY VAL MET THR ALA LEU ILE LYS ARG ASN SER THR SEQRES 3 A 153 ILE PRO THR LYS GLN THR GLN ILE PHE THR THR TYR SER SEQRES 4 A 153 ASP ASN GLN PRO GLY VAL LEU ILE GLN VAL TYR GLU GLY SEQRES 5 A 153 GLU ARG ALA MET THR LYS ASP ASN ASN LEU LEU GLY ARG SEQRES 6 A 153 PHE GLU LEU SER GLY ILE PRO PRO ALA PRO ARG GLY VAL SEQRES 7 A 153 PRO GLN ILE GLU VAL THR PHE ASP ILE ASP ALA ASN GLY SEQRES 8 A 153 ILE LEU ASN VAL THR ALA THR ASP LYS SER THR GLY LYS SEQRES 9 A 153 ALA ASN LYS ILE THR ILE THR ASN ASP LYS GLY ARG LEU SEQRES 10 A 153 SER LYS GLU GLU ILE GLU ARG MET VAL GLN GLU ALA GLU SEQRES 11 A 153 LYS TYR LYS ALA GLU ASP GLU VAL GLN ARG GLU ARG VAL SEQRES 12 A 153 SER MET TYR ARG LEU PRO ASN VAL HIS GLY SEQRES 1 B 153 SER ASP VAL ALA PRO LEU SER LEU GLY LEU GLU THR ALA SEQRES 2 B 153 GLY GLY VAL MET THR ALA LEU ILE LYS ARG ASN SER THR SEQRES 3 B 153 ILE PRO THR LYS GLN THR GLN ILE PHE THR THR TYR SER SEQRES 4 B 153 ASP ASN GLN PRO GLY VAL LEU ILE GLN VAL TYR GLU GLY SEQRES 5 B 153 GLU ARG ALA MET THR LYS ASP ASN ASN LEU LEU GLY ARG SEQRES 6 B 153 PHE GLU LEU SER GLY ILE PRO PRO ALA PRO ARG GLY VAL SEQRES 7 B 153 PRO GLN ILE GLU VAL THR PHE ASP ILE ASP ALA ASN GLY SEQRES 8 B 153 ILE LEU ASN VAL THR ALA THR ASP LYS SER THR GLY LYS SEQRES 9 B 153 ALA ASN LYS ILE THR ILE THR ASN ASP LYS GLY ARG LEU SEQRES 10 B 153 SER LYS GLU GLU ILE GLU ARG MET VAL GLN GLU ALA GLU SEQRES 11 B 153 LYS TYR LYS ALA GLU ASP GLU VAL GLN ARG GLU ARG VAL SEQRES 12 B 153 SER MET TYR ARG LEU PRO ASN VAL HIS GLY FORMUL 3 HOH *331(H2 O) HELIX 1 AA1 MET A 449 ASN A 453 5 5 HELIX 2 AA2 SER A 511 TYR A 525 1 15 HELIX 3 AA3 TYR A 525 SER A 537 1 13 HELIX 4 AA4 MET B 449 ASN B 453 5 5 HELIX 5 AA5 SER B 511 TYR B 525 1 15 HELIX 6 AA6 TYR B 525 MET B 538 1 14 SHEET 1 AA1 2 ASP A 395 VAL A 396 0 SHEET 2 AA1 2 THR A 419 ILE A 420 -1 O ILE A 420 N ASP A 395 SHEET 1 AA2 4 VAL A 409 ILE A 414 0 SHEET 2 AA2 4 LEU A 401 THR A 405 -1 N LEU A 401 O LEU A 413 SHEET 3 AA2 4 GLY A 437 GLU A 444 -1 O TYR A 443 N GLY A 402 SHEET 4 AA2 4 ASN A 454 SER A 462 -1 O ASN A 454 N GLU A 444 SHEET 1 AA3 4 THR A 422 PHE A 428 0 SHEET 2 AA3 4 ILE A 474 ILE A 480 -1 O ILE A 474 N PHE A 428 SHEET 3 AA3 4 LEU A 486 ASP A 492 -1 O ASN A 487 N ASP A 479 SHEET 4 AA3 4 ALA A 498 ILE A 503 -1 O ILE A 503 N LEU A 486 SHEET 1 AA4 2 ASP B 395 VAL B 396 0 SHEET 2 AA4 2 THR B 419 ILE B 420 -1 O ILE B 420 N ASP B 395 SHEET 1 AA5 4 VAL B 409 ILE B 414 0 SHEET 2 AA5 4 LEU B 401 THR B 405 -1 N LEU B 401 O ILE B 414 SHEET 3 AA5 4 GLY B 437 GLU B 444 -1 O TYR B 443 N GLY B 402 SHEET 4 AA5 4 ASN B 454 SER B 462 -1 O LEU B 456 N VAL B 442 SHEET 1 AA6 4 THR B 422 PHE B 428 0 SHEET 2 AA6 4 ILE B 474 ILE B 480 -1 O ILE B 474 N PHE B 428 SHEET 3 AA6 4 LEU B 486 ASP B 492 -1 O ASN B 487 N ASP B 479 SHEET 4 AA6 4 ALA B 498 ILE B 503 -1 O ILE B 503 N LEU B 486 CISPEP 1 ILE A 420 PRO A 421 0 6.11 CISPEP 2 ILE B 420 PRO B 421 0 3.48 CRYST1 41.111 77.054 88.711 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024324 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012978 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011273 0.00000