HEADER HYDROLASE 30-MAR-19 6JQB TITLE THE STRUCTURE OF MALTOOLIGOSACCHARIDE-FORMING AMYLASE FROM PSEUDOMONAS TITLE 2 SACCHAROPHILA STB07 WITH PSEUDO-MALTOHEPTAOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCAN 1,4-ALPHA-MALTOTETRAOHYDROLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: G4-AMYLASE,EXO-MALTOTETRAOHYDROLASE,MALTOTETRAOSE-FORMING COMPND 5 AMYLASE,MALTOTETRAOSE-FORMING EXO-AMYLASE; COMPND 6 EC: 3.2.1.60; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PELOMONAS SACCHAROPHILA; SOURCE 3 ORGANISM_TAXID: 304; SOURCE 4 GENE: MTA; SOURCE 5 EXPRESSION_SYSTEM: BACILLUS SUBTILIS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 1423 KEYWDS MALTOOLIGOSACCHARIDE-FORMING AMYLASE, SACCHAROPHILA STB07, SUGAR KEYWDS 2 BINDING PROTEIN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Z.F.LI,X.F.BAN,Z.Q.ZHANG,C.M.LI,Z.B.GU,T.C.JIN,Y.L.LI,Y.H.SHANG REVDAT 4 22-NOV-23 6JQB 1 REMARK REVDAT 3 03-JUN-20 6JQB 1 JRNL REVDAT 2 08-APR-20 6JQB 1 CAVEAT COMPND REMARK SSBOND REVDAT 2 2 1 LINK SITE ATOM REVDAT 1 01-APR-20 6JQB 0 JRNL AUTH Z.ZHANG,T.JIN,X.XIE,X.BAN,C.LI,Y.HONG,L.CHENG,Z.GU,Z.LI JRNL TITL STRUCTURE OF MALTOTETRAOSE-FORMING AMYLASE FROM PSEUDOMONAS JRNL TITL 2 SACCHAROPHILA STB07 PROVIDES INSIGHTS INTO ITS PRODUCT JRNL TITL 3 SPECIFICITY. JRNL REF INT.J.BIOL.MACROMOL. V. 154 1303 2020 JRNL REFN ISSN 0141-8130 JRNL PMID 31751711 JRNL DOI 10.1016/J.IJBIOMAC.2019.11.006 REMARK 2 REMARK 2 RESOLUTION. 1.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.29 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 202455 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.171 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 10184 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 6.8000 - 3.4187 0.99 6808 358 0.1660 0.1699 REMARK 3 2 3.4187 - 2.7138 1.00 6633 326 0.1670 0.1731 REMARK 3 3 2.7138 - 2.3708 1.00 6545 337 0.1559 0.1608 REMARK 3 4 2.3708 - 2.1540 1.00 6500 352 0.1503 0.1757 REMARK 3 5 2.1540 - 1.9997 1.00 6461 341 0.1556 0.1605 REMARK 3 6 1.9997 - 1.8818 1.00 6477 353 0.1564 0.1710 REMARK 3 7 1.8818 - 1.7875 1.00 6477 323 0.1624 0.1865 REMARK 3 8 1.7875 - 1.7097 1.00 6423 348 0.1592 0.1748 REMARK 3 9 1.7097 - 1.6439 1.00 6403 355 0.1544 0.1766 REMARK 3 10 1.6439 - 1.5872 1.00 6435 333 0.1556 0.1741 REMARK 3 11 1.5872 - 1.5375 1.00 6403 356 0.1473 0.1800 REMARK 3 12 1.5375 - 1.4936 1.00 6410 312 0.1510 0.1664 REMARK 3 13 1.4936 - 1.4543 1.00 6356 381 0.1513 0.1672 REMARK 3 14 1.4543 - 1.4188 1.00 6407 335 0.1505 0.1618 REMARK 3 15 1.4188 - 1.3865 1.00 6440 330 0.1524 0.1613 REMARK 3 16 1.3865 - 1.3570 1.00 6390 318 0.1500 0.1799 REMARK 3 17 1.3570 - 1.3299 1.00 6340 351 0.1515 0.1779 REMARK 3 18 1.3299 - 1.3048 1.00 6426 308 0.1494 0.1767 REMARK 3 19 1.3048 - 1.2815 0.99 6380 324 0.1498 0.1784 REMARK 3 20 1.2815 - 1.2598 1.00 6375 345 0.1461 0.1653 REMARK 3 21 1.2598 - 1.2394 1.00 6398 311 0.1378 0.1651 REMARK 3 22 1.2394 - 1.2204 1.00 6362 333 0.1422 0.1532 REMARK 3 23 1.2204 - 1.2024 1.00 6338 309 0.1372 0.1635 REMARK 3 24 1.2024 - 1.1855 1.00 6380 348 0.1414 0.1575 REMARK 3 25 1.1855 - 1.1695 0.99 6305 341 0.1441 0.1688 REMARK 3 26 1.1695 - 1.1543 0.99 6345 342 0.1430 0.1759 REMARK 3 27 1.1543 - 1.1398 0.99 6242 346 0.1521 0.1669 REMARK 3 28 1.1398 - 1.1261 0.99 6368 363 0.1499 0.1760 REMARK 3 29 1.1261 - 1.1130 0.99 6293 347 0.1545 0.1858 REMARK 3 30 1.1130 - 1.1010 0.97 6151 358 0.1642 0.1900 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.080 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.150 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6JQB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-APR-19. REMARK 100 THE DEPOSITION ID IS D_1300010826. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978910 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 211320 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 12.60 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : 0.09000 REMARK 200 FOR THE DATA SET : 1.3600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 11.90 REMARK 200 R MERGE FOR SHELL (I) : 0.50800 REMARK 200 R SYM FOR SHELL (I) : 0.50800 REMARK 200 FOR SHELL : 5.432 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6IWK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M AMMONIUM SULFATE, 0.2 M TRIS REMARK 280 -HCL, 20 MM ACARBOSE, 20 MM MALTOHEPTAOSE, PH 7.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.95000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.86350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.86750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 81.86350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.95000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.86750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 68 REMARK 465 GLY A 69 REMARK 465 GLY A 70 REMARK 465 GLY A 419 REMARK 465 SER A 420 REMARK 465 GLY A 421 REMARK 465 ASP A 422 REMARK 465 GLY A 423 REMARK 465 GLY A 424 REMARK 465 GLY A 425 REMARK 465 ASN A 426 REMARK 465 ASP A 427 REMARK 465 GLY A 428 REMARK 465 GLY A 429 REMARK 465 GLU A 430 REMARK 465 GLY A 431 REMARK 465 GLY A 432 REMARK 465 LEU A 433 REMARK 465 VAL A 434 REMARK 465 ASN A 435 REMARK 465 VAL A 436 REMARK 465 ASN A 437 REMARK 465 PHE A 438 REMARK 465 ARG A 439 REMARK 465 CYS A 440 REMARK 465 ASP A 441 REMARK 465 ASN A 442 REMARK 465 GLY A 443 REMARK 465 VAL A 444 REMARK 465 THR A 445 REMARK 465 GLN A 446 REMARK 465 MET A 447 REMARK 465 GLY A 448 REMARK 465 ASP A 449 REMARK 465 SER A 450 REMARK 465 VAL A 451 REMARK 465 TYR A 452 REMARK 465 ALA A 453 REMARK 465 VAL A 454 REMARK 465 GLY A 455 REMARK 465 ASN A 456 REMARK 465 VAL A 457 REMARK 465 SER A 458 REMARK 465 GLN A 459 REMARK 465 LEU A 460 REMARK 465 GLY A 461 REMARK 465 ASN A 462 REMARK 465 TRP A 463 REMARK 465 SER A 464 REMARK 465 PRO A 465 REMARK 465 ALA A 466 REMARK 465 SER A 467 REMARK 465 ALA A 468 REMARK 465 VAL A 469 REMARK 465 ARG A 470 REMARK 465 LEU A 471 REMARK 465 THR A 472 REMARK 465 ASP A 473 REMARK 465 THR A 474 REMARK 465 SER A 475 REMARK 465 SER A 476 REMARK 465 TYR A 477 REMARK 465 PRO A 478 REMARK 465 THR A 479 REMARK 465 TRP A 480 REMARK 465 LYS A 481 REMARK 465 GLY A 482 REMARK 465 SER A 483 REMARK 465 ILE A 484 REMARK 465 ALA A 485 REMARK 465 LEU A 486 REMARK 465 PRO A 487 REMARK 465 ASP A 488 REMARK 465 GLY A 489 REMARK 465 GLN A 490 REMARK 465 ASN A 491 REMARK 465 VAL A 492 REMARK 465 GLU A 493 REMARK 465 TRP A 494 REMARK 465 LYS A 495 REMARK 465 CYS A 496 REMARK 465 LEU A 497 REMARK 465 ILE A 498 REMARK 465 ARG A 499 REMARK 465 ASN A 500 REMARK 465 GLU A 501 REMARK 465 ALA A 502 REMARK 465 ASP A 503 REMARK 465 ALA A 504 REMARK 465 THR A 505 REMARK 465 LEU A 506 REMARK 465 VAL A 507 REMARK 465 ARG A 508 REMARK 465 GLN A 509 REMARK 465 TRP A 510 REMARK 465 GLN A 511 REMARK 465 SER A 512 REMARK 465 GLY A 513 REMARK 465 GLY A 514 REMARK 465 ASN A 515 REMARK 465 ASN A 516 REMARK 465 GLN A 517 REMARK 465 VAL A 518 REMARK 465 GLN A 519 REMARK 465 ALA A 520 REMARK 465 ALA A 521 REMARK 465 ALA A 522 REMARK 465 GLY A 523 REMARK 465 ALA A 524 REMARK 465 SER A 525 REMARK 465 THR A 526 REMARK 465 SER A 527 REMARK 465 GLY A 528 REMARK 465 SER A 529 REMARK 465 PHE A 530 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 823 O HOH A 1033 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1041 O HOH A 1042 1655 2.00 REMARK 500 O HOH A 888 O HOH A 1013 3645 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 13 63.25 39.48 REMARK 500 ASP A 151 106.88 -167.18 REMARK 500 ILE A 157 -117.74 53.22 REMARK 500 SER A 183 -94.29 -89.24 REMARK 500 ALA A 211 54.82 -162.16 REMARK 500 LYS A 222 116.84 -160.79 REMARK 500 ASN A 302 13.94 58.31 REMARK 500 TRP A 308 59.11 -162.45 REMARK 500 PRO A 326 -178.95 -64.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 CA A 603 REMARK 615 CA A 604 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 604 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 1 OD1 REMARK 620 2 ASP A 1 OD2 50.0 REMARK 620 3 GLN A 2 O 109.1 85.5 REMARK 620 4 HIS A 13 O 155.9 154.1 82.4 REMARK 620 5 ASP A 16 OD1 77.9 121.5 89.1 81.3 REMARK 620 6 GLU A 17 OE1 77.1 94.3 171.2 94.2 98.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 603 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 116 OD1 REMARK 620 2 ASP A 151 OD1 139.8 REMARK 620 3 ASP A 151 OD2 158.8 52.4 REMARK 620 4 ASP A 154 O 96.1 111.5 91.2 REMARK 620 5 ASP A 162 OD2 81.7 129.4 79.8 81.6 REMARK 620 6 GLY A 197 O 77.5 75.2 122.8 87.7 155.4 REMARK 620 7 HOH A 729 O 74.2 81.5 94.9 166.7 87.9 98.9 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 7SA A 605 DBREF 6JQB A 1 530 UNP P22963 AMT4_PELSC 22 551 SEQRES 1 A 530 ASP GLN ALA GLY LYS SER PRO ALA GLY VAL ARG TYR HIS SEQRES 2 A 530 GLY GLY ASP GLU ILE ILE LEU GLN GLY PHE HIS TRP ASN SEQRES 3 A 530 VAL VAL ARG GLU ALA PRO ASN ASP TRP TYR ASN ILE LEU SEQRES 4 A 530 ARG GLN GLN ALA SER THR ILE ALA ALA ASP GLY PHE SER SEQRES 5 A 530 ALA ILE TRP MET PRO VAL PRO TRP ARG ASP PHE SER SER SEQRES 6 A 530 TRP THR ASP GLY GLY LYS SER GLY GLY GLY GLU GLY TYR SEQRES 7 A 530 PHE TRP HIS ASP PHE ASN LYS ASN GLY ARG TYR GLY SER SEQRES 8 A 530 ASP ALA GLN LEU ARG GLN ALA ALA GLY ALA LEU GLY GLY SEQRES 9 A 530 ALA GLY VAL LYS VAL LEU TYR ASP VAL VAL PRO ASN HIS SEQRES 10 A 530 MET ASN ARG GLY TYR PRO ASP LYS GLU ILE ASN LEU PRO SEQRES 11 A 530 ALA GLY GLN GLY PHE TRP ARG ASN ASP CYS ALA ASP PRO SEQRES 12 A 530 GLY ASN TYR PRO ASN ASP CYS ASP ASP GLY ASP ARG PHE SEQRES 13 A 530 ILE GLY GLY GLU SER ASP LEU ASN THR GLY HIS PRO GLN SEQRES 14 A 530 ILE TYR GLY MET PHE ARG ASP GLU LEU ALA ASN LEU ARG SEQRES 15 A 530 SER GLY TYR GLY ALA GLY GLY PHE ARG PHE ASP PHE VAL SEQRES 16 A 530 ARG GLY TYR ALA PRO GLU ARG VAL ASP SER TRP MET SER SEQRES 17 A 530 ASP SER ALA ASP SER SER PHE CYS VAL GLY GLU LEU TRP SEQRES 18 A 530 LYS GLY PRO SER GLU TYR PRO SER TRP ASP TRP ARG ASN SEQRES 19 A 530 THR ALA SER TRP GLN GLN ILE ILE LYS ASP TRP SER ASP SEQRES 20 A 530 ARG ALA LYS CYS PRO VAL PHE ASP PHE ALA LEU LYS GLU SEQRES 21 A 530 ARG MET GLN ASN GLY SER VAL ALA ASP TRP LYS HIS GLY SEQRES 22 A 530 LEU ASN GLY ASN PRO ASP PRO ARG TRP ARG GLU VAL ALA SEQRES 23 A 530 VAL THR PHE VAL ASP ASN HIS ASP THR GLY TYR SER PRO SEQRES 24 A 530 GLY GLN ASN GLY GLY GLN HIS HIS TRP ALA LEU GLN ASP SEQRES 25 A 530 GLY LEU ILE ARG GLN ALA TYR ALA TYR ILE LEU THR SER SEQRES 26 A 530 PRO GLY THR PRO VAL VAL TYR TRP SER HIS MET TYR ASP SEQRES 27 A 530 TRP GLY TYR GLY ASP PHE ILE ARG GLN LEU ILE GLN VAL SEQRES 28 A 530 ARG ARG THR ALA GLY VAL ARG ALA ASP SER ALA ILE SER SEQRES 29 A 530 PHE HIS SER GLY TYR SER GLY LEU VAL ALA THR VAL SER SEQRES 30 A 530 GLY SER GLN GLN THR LEU VAL VAL ALA LEU ASN SER ASP SEQRES 31 A 530 LEU ALA ASN PRO GLY GLN VAL ALA SER GLY SER PHE SER SEQRES 32 A 530 GLU ALA VAL ASN ALA SER ASN GLY GLN VAL ARG VAL TRP SEQRES 33 A 530 ARG SER GLY SER GLY ASP GLY GLY GLY ASN ASP GLY GLY SEQRES 34 A 530 GLU GLY GLY LEU VAL ASN VAL ASN PHE ARG CYS ASP ASN SEQRES 35 A 530 GLY VAL THR GLN MET GLY ASP SER VAL TYR ALA VAL GLY SEQRES 36 A 530 ASN VAL SER GLN LEU GLY ASN TRP SER PRO ALA SER ALA SEQRES 37 A 530 VAL ARG LEU THR ASP THR SER SER TYR PRO THR TRP LYS SEQRES 38 A 530 GLY SER ILE ALA LEU PRO ASP GLY GLN ASN VAL GLU TRP SEQRES 39 A 530 LYS CYS LEU ILE ARG ASN GLU ALA ASP ALA THR LEU VAL SEQRES 40 A 530 ARG GLN TRP GLN SER GLY GLY ASN ASN GLN VAL GLN ALA SEQRES 41 A 530 ALA ALA GLY ALA SER THR SER GLY SER PHE HET EDO A 601 10 HET EDO A 602 10 HET CA A 603 1 HET CA A 604 1 HET 7SA A 605 150 HETNAM EDO 1,2-ETHANEDIOL HETNAM CA CALCIUM ION HETNAM 7SA ACARBOSE DERIVED HEPTASACCHARIDE HETSYN EDO ETHYLENE GLYCOL HETSYN 7SA (2R,3R,4R,5S,6R)-6-(HYDROXYMETHYL)-5-[(2R,3R,4R,5S,6R)- HETSYN 2 7SA 6-(HYDROXYMETHYL)-5-[(2R,3R,4S,5S,6R)-5-[[(1S,4R,5R, HETSYN 3 7SA 6S)-3-(HYDROXYMETHYL)-4-[(2S,3R,4R,5S,6R)-6- HETSYN 4 7SA (HYDROXYMETHYL)-5-[(2R,3R,4S,5S,6R)-5-[[(1S,4R,5S,6S)- HETSYN 5 7SA 3-(HYDROXYMETHYL)-4,5,6-TRIS(OXIDANYL)CYCLOHEX-2-EN-1- HETSYN 6 7SA YL]AMINO]-6-METHYL-3,4-BIS(OXIDANYL)OXAN-2-YL]OXY-3,4- HETSYN 7 7SA BIS(OXIDANYL)OXAN-2-YL]OXY-5,6-BIS(OXIDANYL)CYCLOHEX- HETSYN 8 7SA 2-EN-1-YL]AMINO]-6-METHYL-3,4-BIS(OXIDANYL)OXAN-2- HETSYN 9 7SA YL]OXY-3,4-BIS(OXIDANYL)OXAN-2-YL]OXY-OXANE-2,3,4- HETSYN 10 7SA TRIOL FORMUL 2 EDO 2(C2 H6 O2) FORMUL 4 CA 2(CA 2+) FORMUL 6 7SA C44 H74 N2 O30 FORMUL 7 HOH *393(H2 O) HELIX 1 AA1 TYR A 12 ASP A 16 5 5 HELIX 2 AA2 ASN A 26 ALA A 31 1 6 HELIX 3 AA3 ASP A 34 ASP A 49 1 16 HELIX 4 AA4 SER A 91 ALA A 105 1 15 HELIX 5 AA5 TRP A 136 CYS A 140 5 5 HELIX 6 AA6 HIS A 167 SER A 183 1 17 HELIX 7 AA7 PHE A 194 TYR A 198 5 5 HELIX 8 AA8 ALA A 199 ALA A 211 1 13 HELIX 9 AA9 GLY A 223 TYR A 227 5 5 HELIX 10 AB1 ASP A 231 ALA A 236 5 6 HELIX 11 AB2 SER A 237 LYS A 250 1 14 HELIX 12 AB3 ASP A 255 GLY A 265 1 11 HELIX 13 AB4 SER A 266 ASN A 277 5 12 HELIX 14 AB5 ASP A 279 GLU A 284 1 6 HELIX 15 AB6 GLY A 300 GLY A 304 5 5 HELIX 16 AB7 GLN A 311 GLY A 313 5 3 HELIX 17 AB8 LEU A 314 SER A 325 1 12 HELIX 18 AB9 TRP A 333 ASP A 338 1 6 HELIX 19 AC1 TYR A 341 GLY A 356 1 16 HELIX 20 AC2 ASN A 393 VAL A 397 5 5 SHEET 1 AA1 9 ILE A 19 GLN A 21 0 SHEET 2 AA1 9 ALA A 53 MET A 56 1 O TRP A 55 N LEU A 20 SHEET 3 AA1 9 LYS A 108 VAL A 113 1 O LEU A 110 N MET A 56 SHEET 4 AA1 9 ALA A 187 PHE A 192 1 O GLY A 188 N VAL A 109 SHEET 5 AA1 9 PHE A 215 GLY A 218 1 O VAL A 217 N PHE A 192 SHEET 6 AA1 9 VAL A 253 PHE A 254 1 O PHE A 254 N GLY A 218 SHEET 7 AA1 9 ALA A 286 PHE A 289 1 O VAL A 287 N VAL A 253 SHEET 8 AA1 9 THR A 328 TYR A 332 1 O THR A 328 N ALA A 286 SHEET 9 AA1 9 ILE A 19 GLN A 21 1 N GLN A 21 O VAL A 331 SHEET 1 AA2 5 ALA A 362 PHE A 365 0 SHEET 2 AA2 5 LEU A 372 SER A 377 -1 O THR A 375 N SER A 364 SHEET 3 AA2 5 THR A 382 LEU A 387 -1 O VAL A 385 N ALA A 374 SHEET 4 AA2 5 VAL A 413 ARG A 417 -1 O ARG A 414 N ALA A 386 SHEET 5 AA2 5 SER A 403 ALA A 408 -1 N ALA A 405 O VAL A 415 SSBOND 1 CYS A 140 CYS A 150 1555 1555 2.03 SSBOND 2 CYS A 216 CYS A 251 1555 1555 2.04 LINK OD1 ASP A 1 CA CA A 604 1555 1555 2.31 LINK OD2 ASP A 1 CA CA A 604 1555 1555 2.77 LINK O GLN A 2 CA CA A 604 1555 1555 2.26 LINK O HIS A 13 CA CA A 604 1555 1555 2.31 LINK OD1 ASP A 16 CA CA A 604 1555 1555 2.38 LINK OE1 GLU A 17 CA CA A 604 1555 1555 2.28 LINK OD1 ASN A 116 CA CA A 603 1555 1555 2.45 LINK OD1 ASP A 151 CA CA A 603 1555 1555 2.57 LINK OD2 ASP A 151 CA CA A 603 1555 1555 2.43 LINK O ASP A 154 CA CA A 603 1555 1555 2.46 LINK OD2 ASP A 162 CA CA A 603 1555 1555 2.56 LINK O GLY A 197 CA CA A 603 1555 1555 2.39 LINK CA CA A 603 O HOH A 729 1555 1555 2.43 SITE 1 AC1 6 ARG A 96 GLY A 184 GLY A 186 HOH A 703 SITE 2 AC1 6 HOH A 865 HOH A 926 SITE 1 AC2 4 GLY A 300 GLN A 301 ASN A 393 HOH A 873 SITE 1 AC3 33 TRP A 25 TRP A 66 TYR A 78 PHE A 79 SITE 2 AC3 33 HIS A 117 PHE A 156 ILE A 157 GLY A 158 SITE 3 AC3 33 GLU A 160 SER A 161 ARG A 191 ASP A 193 SITE 4 AC3 33 PHE A 194 ARG A 196 GLU A 219 TRP A 221 SITE 5 AC3 33 GLU A 226 TRP A 238 HIS A 293 ASP A 294 SITE 6 AC3 33 GLN A 305 HIS A 307 TRP A 308 HOH A 730 SITE 7 AC3 33 HOH A 772 HOH A 809 HOH A 838 HOH A 866 SITE 8 AC3 33 HOH A 868 HOH A 913 HOH A 963 HOH A 995 SITE 9 AC3 33 HOH A1011 CRYST1 47.900 63.735 163.727 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020877 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015690 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006108 0.00000